Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PD0	17597	2024-04-05	2023-06-11	3.58	3.92	3.55	3.9	0.004	0.63	0.0	0.04	16.37	0.00	2.325	3.20	0.40	1.9	98.1	0.0	2.27	0.65	0.80	1.76	4.0	0.003	0.50	0.0	0.04	16.44	0.00	2.281	3.96	3.63	4.8	95.2	0.0	2.38	0.23	0.65	0.80	1.47	6274	880	2	0	4	0	0	logfile
✔	8JPF	36478	2024-04-05	2023-06-11	3.02	3.21	3.41	3.3	0.006	1.76	0.0	0.27	15.61	0.00	2.214	5.45	0.46	2.7	97.3	0.0	2.25	0.48	0.75	2.58	3.3	0.003	0.66	0.0	0.04	16.05	0.00	2.153	8.17	2.75	3.0	97.0	0.0	1.86	0.41	0.45	0.78	2.79	2269	304	3	0	1	0	0	logfile
✔	8PCZ	17596	2024-04-09	2023-06-11	3.21	2.32	3.12	2.1	0.003	0.56	0.0	0.04	12.91	0.00	2.216	5.81	0.23	2.3	97.7	0.0	1.86	0.70	0.75	2.92	2.1	0.003	0.55	0.0	0.04	15.73	0.00	2.222	6.36	2.05	2.3	97.7	0.0	2.53	0.54	0.79	0.80	2.46	16176	2046	2	0	0	0	0	logfile
✔	8PD7	17602	2024-04-06	2023-06-11	3.4	2.32	3.31	2.1	0.003	0.59	0.0	0.04	12.69	0.00	2.276	3.44	0.11	1.5	98.5	0.0	1.39	0.62	0.78	2.65	2.1	0.003	0.54	0.0	0.04	15.85	0.00	2.218	5.92	2.72	2.5	97.5	0.0	2.32	0.99	0.69	0.81	2.03	8121	1028	1	0	0	0	0	logfile
✔	8PD3	17599	2024-04-06	2023-06-11	3.3	2.29	3.23	2.1	0.003	0.56	0.0	0.04	13.67	0.00	2.227	4.23	0.00	1.3	98.7	0.0	0.70	0.61	0.78	2.84	2.1	0.003	0.51	0.0	0.04	15.68	0.00	2.163	5.56	2.94	1.5	98.5	0.0	2.38	0.96	0.67	0.81	2.04	8121	1028	1	0	0	0	0	logfile
✔	8JPD	36476	2024-04-05	2023-06-11	2.81	3.01	2.83	3.1	0.004	0.61	0.0	0.04	14.35	0.00	2.283	4.50	0.37	2.7	97.3	0.0	0.83	0.68	0.79	3.29	3.0	0.003	0.63	0.0	0.04	17.20	0.00	2.161	8.51	2.24	2.4	97.6	0.0	0.86	1.35	0.69	0.86	3.44	5198	658	2	0	1	0	0	logfile
✔	8PD5	17601	2024-04-06	2023-06-11	3.4	2.30	3.32	2.1	0.003	0.53	0.0	0.04	13.12	0.00	2.148	2.18	0.00	2.2	97.8	0.0	1.83	0.61	0.77	2.43	2.1	0.002	0.48	0.0	0.04	15.95	0.00	2.268	4.48	2.28	1.7	98.3	0.0	2.65	0.49	0.68	0.81	2.00	8093	1024	1	0	0	0	0	logfile
✔	8PD2	17598	2024-04-06	2023-06-11	3.25	2.29	3.19	2.1	0.004	0.52	0.0	0.04	12.99	0.00	2.322	3.02	0.00	1.4	98.6	0.0	0.72	0.62	0.78	3.03	2.1	0.003	0.52	0.0	0.04	15.84	0.00	2.245	4.80	2.56	1.4	98.6	0.0	2.59	0.97	0.68	0.82	2.36	8270	1047	1	0	0	0	0	logfile
✔	8PBD	17585	2024-04-12	2023-06-09	2.83	3.29	3.26	3.3	0.007	0.52	0.0	0.04	15.39	0.00	2.152	5.21	1.92	6.2	93.5	0.3	-4.28	0.59	0.82	4.13	3.3	0.005	0.60	0.0	0.04	18.32	0.00	2.158	8.81	3.53	2.5	97.5	0.0	0.05	0.59	0.53	0.83	3.13	26366	3254	31	54	30	0	0	logfile
✔	8PC6	17595	2024-04-08	2023-06-09	3.04	3.48	3.06	3.1	0.004	0.68	0.0	0.04	28.54	0.01	2.142	7.87	0.13	2.2	97.8	0.0	0.83	0.89	0.83	2.36	3.1	0.004	0.58	0.0	0.03	27.32	0.00	2.154	9.25	0.51	2.5	97.5	0.0	1.36	1.33	0.93	0.92	2.94	13493	939	12	294	0	0	0	logfile
✔	8T4S	41039	2024-04-11	2023-06-09	2.6	2.55	—	1.7	0.005	0.70	0.0	0.05	23.99	0.01	1.654	12.19	3.03	4.5	95.1	0.4	-0.03	0.89	0.87	3.39	1.6	0.005	0.65	0.0	0.04	23.46	0.01	1.847	9.17	2.84	4.4	95.3	0.3	0.19	1.11	0.89	0.87	3.30	74894	4895	42	1671	100	4	0	logfile
✔	8PBL	17586	2024-04-12	2023-06-09	2.87	2.31	2.88	2.6	0.005	0.77	0.0	0.05	15.61	0.01	2.137	12.11	0.18	2.9	97.1	0.0	-0.47	0.53	0.57	1.91	2.3	0.003	0.62	0.0	0.04	17.90	0.00	2.150	12.01	1.48	2.7	97.3	0.0	-0.26	0.86	0.63	0.62	1.82	26261	3171	10	68	3	0	0	logfile
✔	8PC5	17594	2024-04-08	2023-06-09	3.02	3.37	3.06	3.0	0.006	0.79	0.0	0.06	29.26	0.01	2.205	7.09	0.42	1.9	98.1	0.0	1.05	0.90	0.86	3.01	3.0	0.004	0.57	0.0	0.03	27.66	0.00	2.221	7.05	1.26	2.0	98.0	0.0	1.61	1.95	0.93	0.91	2.63	12836	853	11	294	0	0	0	logfile
✔	8JoV	36463	2024-04-10	2023-06-08	3.8	3.76	3.78	3.7	0.003	0.70	0.0	0.04	13.80	0.01	2.195	15.09	0.09	4.0	95.6	0.4	0.47	0.57	0.79	1.01	3.7	0.004	0.66	0.0	0.04	16.03	0.00	2.102	15.25	2.57	5.4	94.3	0.3	0.35	0.47	0.58	0.81	0.94	128070	16764	60	0	0	0	0	logfile
✔	8PB9	17581	2024-04-08	2023-06-08	3.3	2.52	2.93	1.8	0.010	0.90	0.0	0.04	16.35	0.00	2.240	14.03	0.08	4.5	95.5	0.0	-0.84	0.72	0.69	1.16	1.8	0.003	0.64	0.0	0.04	17.41	0.00	2.228	15.70	2.69	4.7	95.3	0.0	-0.76	0.37	0.72	0.69	0.99	12265	1552	8	0	4	0	0	logfile
✔	8PB1	17580	2024-04-06	2023-06-08	3.5	3.99	3.47	3.7	0.005	0.86	0.0	0.06	15.49	0.01	2.253	6.71	0.26	3.7	96.3	0.0	-0.98	0.75	0.78	2.11	3.8	0.004	0.65	0.0	0.04	15.56	0.00	2.149	11.74	1.72	5.0	95.0	0.0	-0.39	0.87	0.76	0.80	1.99	6652	829	8	0	8	1	0	logfile
✔	8T3Y	41016	2024-04-08	2023-06-08	3.47	3.65	3.22	3.4	0.004	0.64	0.0	0.04	26.54	0.00	2.284	6.78	1.74	2.8	97.2	0.0	-1.27	0.87	0.87	2.24	3.3	0.005	0.63	0.0	0.04	26.97	0.00	2.165	5.60	2.95	2.8	97.2	0.0	0.93	0.60	0.88	0.90	2.15	13001	886	14	292	4	0	0	logfile
✔	8JoU	36462	2024-04-07	2023-06-08	4.1	6.13	3.95	3.9	0.004	0.83	0.0	0.05	12.09	0.01	0.759	16.82	0.49	7.7	90.4	1.9	-1.54	0.17	0.37	—	3.1	0.003	0.69	0.0	0.04	11.93	0.00	2.055	23.73	0.08	8.5	89.8	1.7	-1.53	1.41	0.23	0.86	—	62425	8135	70	0	590	0	0	logfile
✔	8T3V	41013	2024-04-06	2023-06-07	3.39	3.88	3.56	3.9	0.005	0.81	0.0	0.05	15.86	0.01	2.175	11.45	0.44	2.6	97.4	0.0	0.38	0.52	0.64	0.69	3.9	0.004	0.66	0.0	0.04	16.46	0.00	2.080	10.53	3.71	2.9	97.1	0.0	0.85	0.74	0.60	0.83	1.73	8742	1136	6	0	2	0	0	logfile
✔	8T3W	41015	2024-04-08	2023-06-07	3.25	3.53	3.11	3.3	0.004	0.64	0.0	0.04	26.53	0.00	2.284	6.74	1.74	2.8	97.2	0.0	-1.27	0.88	0.88	2.25	3.3	0.004	0.59	0.0	0.03	27.21	0.00	2.241	5.34	3.75	2.1	97.9	0.0	0.78	0.53	0.90	0.92	2.24	13001	886	14	292	4	0	0	logfile

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