Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T3o	41007	2024-04-06	2023-06-07	3.06	3.45	3.17	3.4	0.006	1.02	0.0	0.05	16.62	0.00	2.123	8.88	0.21	3.1	96.9	0.0	0.34	0.61	0.83	3.05	3.4	0.002	0.55	0.0	0.04	16.63	0.00	2.199	8.33	2.78	2.5	97.5	0.0	0.96	0.32	0.57	0.80	2.70	9109	1158	6	0	3	0	0	logfile
✔	8T3S	41010	2024-04-06	2023-06-07	3.07	3.44	3.18	3.4	0.005	0.75	1.0	0.05	15.22	0.00	2.185	9.29	0.53	2.5	97.5	0.0	0.78	0.63	0.85	2.72	3.4	0.006	0.59	0.0	0.04	15.55	0.00	2.143	9.81	3.42	2.5	97.5	0.0	1.06	0.91	0.61	0.86	3.16	8769	1119	6	0	4	0	0	logfile
✔	8T3W	41015	2024-04-08	2023-06-07	3.25	3.53	3.11	3.3	0.004	0.64	0.0	0.04	26.53	0.00	2.284	6.74	1.74	2.8	97.2	0.0	-1.27	0.88	0.88	2.25	3.3	0.004	0.59	0.0	0.03	27.21	0.00	2.241	5.34	3.75	2.1	97.9	0.0	0.78	0.53	0.90	0.92	2.24	13001	886	14	292	4	0	0	logfile
✔	8JoL	36459	2024-04-06	2023-06-07	3.0	3.98	2.98	3.4	0.009	1.46	0.0	0.07	18.20	0.01	2.214	35.79	16.43	12.3	86.8	0.8	-4.77	0.56	0.70	0.79	3.4	0.003	0.77	0.0	0.04	16.16	0.00	1.944	9.11	1.65	3.6	96.4	0.0	0.76	2.18	0.62	0.88	1.56	8513	1087	5	0	4	0	0	logfile
✔	8T3T	41011	2024-04-08	2023-06-07	3.21	3.55	3.10	3.3	0.004	0.60	0.0	0.04	27.44	0.00	2.202	7.81	0.27	2.9	97.1	0.0	0.21	0.89	0.91	2.14	3.3	0.004	0.55	0.0	0.03	27.35	0.00	2.205	6.15	3.49	2.7	97.3	0.0	1.38	0.23	0.89	0.92	1.43	12991	885	14	292	4	0	0	logfile
✔	8T3V	41013	2024-04-06	2023-06-07	3.39	3.88	3.56	3.9	0.005	0.81	0.0	0.05	15.86	0.01	2.175	11.45	0.44	2.6	97.4	0.0	0.38	0.52	0.64	0.69	3.9	0.004	0.66	0.0	0.04	16.46	0.00	2.080	10.53	3.71	2.9	97.1	0.0	0.85	0.74	0.60	0.83	1.73	8742	1136	6	0	2	0	0	logfile
✔	8JNS	36450	2024-04-12	2023-06-06	4.2	5.01	4.21	3.5	0.010	1.52	0.0	0.08	18.70	0.01	1.390	39.59	17.81	12.8	86.4	0.8	-4.88	0.88	0.76	—	3.5	0.002	0.70	0.0	0.04	13.62	0.00	1.945	9.74	0.00	3.5	96.5	0.0	0.66	1.16	0.91	0.85	—	24168	2985	15	0	12	0	0	logfile
✔	8JNJ	36449	2024-04-07	2023-06-06	3.3	3.66	3.37	3.6	0.004	0.49	0.0	0.04	10.55	0.00	2.292	7.26	1.45	1.6	98.4	0.0	-0.38	0.63	0.84	3.60	3.6	0.003	0.56	0.0	0.04	14.14	0.00	2.193	8.65	2.01	1.9	98.1	0.0	1.56	0.95	0.57	0.83	2.46	11736	1516	2	0	0	0	0	logfile
✔	8P9Y	17578	2024-04-12	2023-06-06	4.3	3.62	4.34	4.3	0.012	1.60	8.0	0.12	14.36	0.01	1.112	59.14	7.52	4.0	95.5	0.5	-0.03	0.70	0.63	—	4.3	0.004	0.80	0.0	0.05	13.30	0.01	2.060	19.06	0.00	5.5	94.4	0.0	-1.02	1.35	0.70	0.70	—	25937	3237	16	0	48	0	0	logfile
✔	8T2T	40987	2024-04-08	2023-06-06	3.0	3.39	3.19	9.5	0.006	0.97	0.0	0.05	24.84	0.01	1.982	4.25	0.00	4.5	95.0	0.5	-1.78	0.45	0.06	0.14	3.0	0.007	1.28	0.0	0.06	26.99	0.01	0.920	37.81	5.28	4.7	95.3	0.0	-2.15	2.56	0.75	0.71	1.29	14876	387	5	546	12	0	0	logfile
✔	8Jo2	36453	2024-04-15	2023-06-06	2.74	2.96	2.83	3.0	0.011	1.06	4.0	0.06	18.63	0.00	2.068	13.99	2.22	6.7	93.3	0.0	-2.09	0.67	0.77	2.16	3.0	0.003	0.62	0.0	0.04	20.06	0.00	2.150	10.11	2.84	3.5	96.5	0.0	0.49	0.81	0.69	0.84	1.86	35368	4163	10	130	0	0	0	logfile
✔	8JNi	36448	2024-04-06	2023-06-06	3.2	3.57	3.22	3.5	0.006	0.91	0.0	0.20	12.63	0.01	2.204	6.65	1.93	3.7	96.3	0.0	0.89	0.65	0.84	2.88	3.5	0.003	0.49	0.0	0.04	14.20	0.00	2.173	7.47	2.89	2.3	97.7	0.0	1.61	0.87	0.56	0.83	2.28	7842	994	4	0	4	0	0	logfile
✔	8JNE	36443	2024-04-14	2023-06-06	4.68	5.10	4.49	4.6	0.006	1.09	0.0	0.06	20.64	0.01	1.788	24.82	0.14	0.3	99.7	0.0	-0.17	0.82	0.68	—	4.5	0.004	0.68	0.0	0.04	21.18	0.00	2.121	21.46	0.04	2.4	97.6	0.0	0.46	3.36	0.83	0.72	—	32956	3452	20	309	0	0	0	logfile
✔	8Jo0	36451	2024-04-13	2023-06-06	3.6	4.68	3.50	3.5	0.009	1.48	1.0	0.08	21.29	0.01	1.813	62.06	27.27	13.8	84.9	1.3	-4.82	0.84	0.71	0.75	3.6	0.003	0.81	0.0	0.04	17.07	0.00	1.936	12.95	3.28	4.6	95.4	0.0	-0.04	3.15	0.88	0.84	1.32	27362	3382	20	0	14	0	0	logfile
✔	8T2S	40986	2024-04-09	2023-06-06	3.0	3.20	3.02	3.2	0.004	0.89	0.0	0.04	24.68	0.01	2.251	3.85	2.04	2.9	97.1	0.0	-2.71	0.64	0.82	3.11	3.2	0.003	0.60	0.0	0.03	24.22	0.00	2.146	9.84	4.37	5.5	94.5	0.0	-0.35	0.35	0.70	0.86	2.35	14998	389	3	551	13	0	0	logfile
✔	8JND	36442	2024-04-14	2023-06-06	3.66	4.95	3.55	4.6	0.006	0.80	0.0	0.05	21.26	0.01	2.205	12.97	0.04	0.9	99.1	0.0	-0.34	0.88	0.79	0.77	4.6	0.004	0.65	0.0	0.04	22.11	0.00	2.076	15.07	1.15	1.0	99.0	0.0	1.36	1.33	0.86	0.73	0.73	30404	3115	19	309	0	0	0	logfile
✔	8T2V	40989	2024-04-08	2023-06-06	3.4	4.28	3.49	3.7	0.016	1.93	1.0	0.10	20.17	0.01	1.751	11.21	5.50	9.1	90.0	1.0	-1.99	0.91	0.84	2.12	3.7	0.004	0.72	0.0	0.04	16.58	0.00	1.883	12.21	2.75	6.4	93.5	0.1	-0.58	1.15	0.91	0.84	2.17	13134	1664	10	0	34	6	0	logfile
✔	8T2U	40988	2024-04-06	2023-06-06	3.1	3.94	3.08	3.5	0.014	1.65	0.0	0.08	20.64	0.01	1.807	30.14	4.62	8.1	91.6	0.2	-2.18	0.85	0.77	1.42	3.6	0.004	0.72	0.0	0.05	17.07	0.00	1.924	19.65	2.89	7.1	92.7	0.1	-1.47	1.21	0.83	0.72	1.04	6552	822	8	0	21	2	0	logfile
✔	8T2R	40985	2024-04-09	2023-06-06	3.1	3.34	3.14	3.3	0.006	0.96	0.0	0.05	25.03	0.01	2.174	4.24	1.15	3.1	96.3	0.5	-2.13	0.68	0.83	2.96	3.3	0.004	0.65	0.0	0.04	24.64	0.00	2.070	11.32	4.32	4.2	95.3	0.5	0.52	0.38	0.75	0.86	2.95	15063	388	4	552	15	0	0	logfile
✔	8T21	40977	2024-04-11	2023-06-05	3.6	4.01	3.75	3.9	0.005	1.03	1.0	0.05	16.99	0.01	1.943	23.91	0.34	11.6	88.0	0.3	-2.22	0.69	0.72	0.85	3.9	0.004	0.85	0.0	0.05	17.39	0.01	1.989	18.15	3.61	10.4	89.3	0.2	-2.06	0.83	0.73	0.77	1.46	23430	3003	3	0	0	0	0	logfile

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