Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T25	40980	2024-04-08	2023-06-05	3.62	3.81	3.74	3.8	0.003	0.63	0.0	0.04	18.09	0.01	2.200	10.48	0.44	4.0	96.0	0.0	-0.27	0.62	0.60	0.80	3.8	0.003	0.66	0.0	0.04	18.35	0.00	2.148	12.00	5.81	5.5	94.5	0.0	-0.38	0.33	0.64	0.62	0.88	6408	787	2	0	0	0	0	logfile
✔	8JMN	36424	2024-04-07	2023-06-05	2.26	2.43	2.28	2.4	0.007	0.92	0.0	0.05	18.78	0.01	1.890	5.76	3.29	2.3	97.7	0.0	1.14	0.68	0.86	4.55	2.4	0.004	0.58	0.0	0.04	18.19	0.01	1.858	5.96	1.88	1.4	98.6	0.0	0.81	1.09	0.69	0.87	4.52	10491	1251	6	0	11	373	0	logfile
✔	8JMV	36427	2024-04-12	2023-06-05	2.9	3.29	2.89	3.1	0.007	0.69	0.0	0.04	16.75	0.00	2.111	12.83	0.00	3.8	96.2	0.0	-2.34	0.63	0.86	2.17	3.1	0.005	0.62	0.0	0.04	17.58	0.00	2.188	7.98	2.49	2.6	97.2	0.2	2.10	1.61	0.64	0.88	2.11	80025	10692	33	0	0	0	0	logfile
✔	8JMT	36426	2024-04-05	2023-06-05	3.3	3.55	3.41	3.7	0.003	0.74	0.0	0.04	14.38	0.00	2.204	8.56	0.00	3.5	96.5	0.0	-0.01	0.35	0.59	1.38	3.7	0.004	0.60	0.0	0.04	16.44	0.00	2.245	10.12	0.99	3.5	96.5	0.0	1.56	1.17	0.32	0.60	1.22	1894	234	1	0	0	0	0	logfile
✔	8JMW	36428	2024-04-10	2023-06-05	2.9	3.38	2.87	3.1	0.007	0.64	0.0	0.05	15.80	0.01	2.204	9.12	0.00	5.7	94.3	0.0	-0.48	0.74	0.88	3.40	3.1	0.004	0.55	0.0	0.04	16.32	0.00	2.085	9.20	1.30	5.0	95.0	0.0	0.31	0.35	0.75	0.89	3.35	69552	9306	18	0	0	0	0	logfile
✔	8T20	40976	2024-04-14	2023-06-05	3.36	3.67	3.71	3.7	0.007	1.06	0.0	0.06	18.41	0.01	1.836	25.57	0.67	12.9	86.9	0.2	-2.81	0.53	0.49	0.09	3.6	0.006	1.06	2.0	0.05	18.66	0.01	1.620	24.93	4.83	13.0	86.9	0.1	-2.58	1.02	0.65	0.71	1.51	32612	4117	5	0	0	0	0	logfile
✔	8T23	40979	2024-04-06	2023-06-05	3.87	4.12	4.24	7.5	0.005	1.00	0.0	0.05	19.22	0.01	2.136	16.85	0.59	11.9	88.1	0.0	-3.06	0.59	0.48	0.19	7.3	0.003	0.82	0.0	0.05	18.12	0.01	2.123	17.32	3.81	11.5	88.5	0.0	-2.57	1.42	0.62	0.55	-0.26	6451	781	6	0	6	0	0	logfile
✔	8T21	40977	2024-04-11	2023-06-05	3.6	4.01	3.75	3.9	0.005	1.03	1.0	0.05	16.99	0.01	1.943	23.91	0.34	11.6	88.0	0.3	-2.22	0.69	0.72	0.85	3.9	0.004	0.85	0.0	0.05	17.39	0.01	1.989	18.15	3.61	10.4	89.3	0.2	-2.06	0.83	0.73	0.77	1.46	23430	3003	3	0	0	0	0	logfile
✔	8P94	17558	2024-04-15	2023-06-05	3.3	3.96	3.39	3.7	0.006	0.90	0.0	0.05	14.68	0.01	1.298	9.91	0.00	2.8	97.2	0.0	-2.56	0.77	0.75	2.46	3.7	0.004	0.60	0.0	0.04	14.93	0.00	1.727	5.35	0.44	3.5	96.5	0.0	0.48	0.64	0.79	0.84	2.41	100110	6390	42	0	34	0	49452	logfile
✔	8P99	17576	2024-04-12	2023-06-05	3.4	2.53	3.36	2.2	0.012	1.53	11.0	0.11	14.99	0.01	1.100	60.68	8.63	3.7	95.8	0.5	0.79	0.75	0.71	1.41	2.2	0.004	0.74	0.0	0.05	15.89	0.00	2.061	12.48	4.44	3.9	96.0	0.1	-0.26	0.72	0.75	0.77	1.47	25713	3219	16	0	44	0	0	logfile
✔	8JMA	36411	2024-04-12	2023-06-04	2.5	2.43	2.54	2.6	0.004	0.51	0.0	0.04	16.39	0.00	2.210	4.35	0.61	1.3	98.7	0.0	3.05	0.61	0.81	3.53	2.6	0.002	0.42	0.0	0.03	16.45	0.00	2.187	3.70	0.61	1.3	98.7	0.0	3.33	0.19	0.60	0.81	3.52	24568	1524	8	0	4	0	12472	logfile
✔	8JM9	36410	2024-04-12	2023-06-04	2.6	2.53	2.63	2.8	0.003	0.47	0.0	0.03	15.46	0.00	2.099	5.71	0.61	1.3	98.7	0.0	3.59	0.45	0.69	2.96	2.8	0.002	0.44	0.0	0.03	15.52	0.00	2.111	4.00	0.30	1.7	98.3	0.0	3.70	0.36	0.57	0.80	3.00	24520	1524	4	0	0	0	12472	logfile
✔	8JMi	36422	2024-04-13	2023-06-04	2.6	2.27	2.41	2.6	0.004	0.54	0.0	0.03	15.88	0.00	2.100	5.96	0.88	2.8	97.2	0.0	2.54	0.64	0.82	3.01	2.6	0.004	0.54	0.0	0.04	15.96	0.00	2.112	5.49	1.49	2.4	97.6	0.0	2.91	0.28	0.64	0.82	3.40	27256	1628	8	0	8	0	13812	logfile
✔	8JME	36417	2024-04-13	2023-06-04	2.5	2.52	2.53	2.6	0.003	0.50	0.0	0.03	16.25	0.01	1.998	3.06	0.27	3.2	96.8	0.0	2.95	0.62	0.80	3.00	2.6	0.003	0.52	0.0	0.04	16.32	0.01	2.296	3.94	1.56	2.2	97.8	0.0	3.08	0.35	0.61	0.81	3.40	27164	1628	4	0	0	0	13812	logfile
✔	8JMH	36421	2024-04-13	2023-06-04	2.5	2.95	2.48	2.8	0.007	0.57	0.0	0.05	15.01	0.00	2.118	2.82	0.07	2.6	97.4	0.0	3.05	0.64	0.82	3.38	2.8	0.003	0.50	0.0	0.05	14.59	0.00	2.172	3.11	0.54	2.5	97.5	0.0	2.91	0.26	0.63	0.82	3.18	27256	1628	8	0	8	0	13812	logfile
✔	8JLZ	36409	2024-04-06	2023-06-04	3.09	2.32	3.33	2.1	0.005	0.79	0.0	0.04	13.38	0.01	2.170	6.28	0.12	3.7	96.3	0.0	-0.56	0.78	0.77	2.77	2.1	0.003	0.53	0.0	0.04	15.20	0.00	2.124	6.02	2.22	2.2	97.8	0.0	0.30	0.34	0.79	0.79	2.23	7730	1015	5	0	1	0	0	logfile
✔	8JLW	36406	2024-04-05	2023-06-03	3.0	3.23	2.87	3.2	0.005	0.69	0.0	0.04	14.61	0.01	2.255	11.03	0.00	9.3	90.7	0.0	-1.71	0.58	0.71	4.14	3.2	0.004	0.71	0.0	0.04	17.29	0.01	2.200	12.23	2.15	9.6	90.4	0.0	-1.17	0.38	0.56	0.72	3.72	2157	280	3	0	0	0	0	logfile
✔	8JLX	36407	2024-04-05	2023-06-03	3.0	3.13	2.80	3.1	0.004	0.75	0.0	0.05	14.32	0.01	2.247	12.73	0.00	11.9	88.1	0.0	-2.27	0.54	0.71	2.31	3.1	0.004	0.70	0.0	0.05	17.49	0.00	2.131	12.73	3.14	10.5	89.5	0.0	-1.92	0.40	0.53	0.73	2.62	2277	293	3	0	0	0	0	logfile
✔	8T1o	40973	2024-04-08	2023-06-02	3.3	3.56	3.30	3.5	0.003	0.59	0.0	0.04	14.78	0.00	2.146	8.73	0.00	3.0	96.9	0.1	0.93	0.60	0.69	1.99	3.5	0.003	0.56	0.0	0.04	16.13	0.00	2.146	8.48	1.37	2.7	97.2	0.1	1.03	0.94	0.71	0.84	1.67	13800	1727	6	0	1	0	0	logfile
✔	8T1K	40970	2024-04-06	2023-06-02	3.14	3.28	3.06	3.3	0.012	1.46	1.0	0.07	12.82	0.01	2.350	1.24	0.00	2.6	97.4	0.0	0.05	0.79	0.85	4.33	3.3	0.003	0.58	0.0	0.04	15.25	0.00	2.228	4.22	1.33	2.3	97.7	0.0	0.95	1.68	0.78	0.88	3.91	6973	840	5	0	5	0	0	logfile

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