Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T1J	40969	2024-04-06	2023-06-02	2.7	2.99	2.81	3.0	0.012	1.45	0.0	0.07	12.84	0.01	2.502	0.95	0.00	2.4	97.6	0.0	0.15	0.76	0.80	4.27	3.0	0.003	0.59	0.0	0.04	16.33	0.00	2.275	4.52	1.86	2.8	97.2	0.0	0.89	0.67	0.72	0.83	3.92	6973	840	5	0	5	0	0	logfile
✔	8JL0	36385	2024-04-07	2023-06-02	3.1	2.70	3.09	3.1	0.008	0.73	0.0	0.05	20.61	0.01	2.233	8.69	0.79	8.3	91.3	0.4	-1.51	0.77	0.85	2.48	3.1	0.005	0.61	0.0	0.04	20.50	0.00	2.211	7.80	4.95	8.9	91.0	0.1	-1.31	0.20	0.76	0.87	2.74	9244	1042	5	44	1	0	0	logfile
✔	8T1o	40973	2024-04-08	2023-06-02	3.3	3.56	3.30	3.5	0.003	0.59	0.0	0.04	14.78	0.00	2.146	8.73	0.00	3.0	96.9	0.1	0.93	0.60	0.69	1.99	3.5	0.003	0.56	0.0	0.04	16.13	0.00	2.146	8.48	1.37	2.7	97.2	0.1	1.03	0.94	0.71	0.84	1.67	13800	1727	6	0	1	0	0	logfile
✔	8T1F	40962	2024-04-10	2023-06-02	3.49	3.75	3.60	3.7	0.007	1.37	0.0	0.06	14.14	0.01	2.171	4.71	0.85	11.6	87.7	0.6	-5.59	0.62	0.82	3.07	3.7	0.003	0.77	0.0	0.04	16.05	0.00	2.126	11.00	2.64	9.4	90.2	0.4	-1.38	1.14	0.69	0.85	2.48	20790	2542	8	0	8	0	0	logfile
✔	8T1D	40960	2024-04-10	2023-06-02	3.35	3.74	3.50	3.7	0.027	1.47	0.0	0.21	12.77	0.01	2.170	6.09	0.72	12.2	87.1	0.6	-5.63	0.57	0.77	2.57	3.7	0.007	1.24	0.0	0.10	15.84	0.01	1.916	21.29	4.03	11.9	87.4	0.7	-3.29	0.70	0.57	0.81	2.32	20338	2502	8	0	4	0	0	logfile
✔	8JL9	36389	2024-04-08	2023-06-02	2.65	2.16	2.47	2.0	0.005	0.86	1.0	0.05	28.86	0.01	1.865	2.36	0.00	1.9	98.1	0.0	0.24	0.60	0.65	2.76	1.7	0.004	0.60	0.0	0.04	28.26	0.00	2.247	4.44	1.44	1.4	98.6	0.0	2.82	1.15	0.80	0.85	3.39	12314	753	10	310	0	0	0	logfile
✔	8JLQ	36404	2024-04-06	2023-06-02	2.84	3.01	2.88	3.1	0.005	0.78	1.0	0.05	13.14	0.00	2.203	18.53	0.41	4.0	96.0	0.0	-0.45	0.59	0.69	2.82	3.0	0.003	0.68	0.0	0.04	16.05	0.00	2.091	17.64	2.55	4.3	95.7	0.0	-0.11	0.50	0.58	0.74	2.08	9033	1140	6	0	1	0	0	logfile
✔	8JLo	36402	2024-04-06	2023-06-02	3.52	3.78	3.53	3.7	0.005	0.74	0.0	0.04	14.26	0.00	2.257	7.12	0.25	4.5	95.5	0.0	-0.64	0.59	0.79	2.09	3.7	0.003	0.59	0.0	0.04	16.26	0.00	2.215	6.84	1.63	4.5	95.5	0.0	0.36	0.39	0.64	0.82	1.66	7343	922	5	0	1	0	0	logfile
✔	8T1K	40970	2024-04-06	2023-06-02	3.14	3.28	3.06	3.3	0.012	1.46	1.0	0.07	12.82	0.01	2.350	1.24	0.00	2.6	97.4	0.0	0.05	0.79	0.85	4.33	3.3	0.003	0.58	0.0	0.04	15.25	0.00	2.228	4.22	1.33	2.3	97.7	0.0	0.95	1.68	0.78	0.88	3.91	6973	840	5	0	5	0	0	logfile
✔	8JLD	36393	2024-04-07	2023-06-02	2.48	2.34	2.40	2.8	0.004	0.71	0.0	0.04	29.74	0.01	1.941	4.35	0.32	1.4	98.6	0.0	0.65	0.78	0.87	3.08	2.7	0.004	0.59	0.0	0.03	28.30	0.00	2.161	4.59	2.92	1.5	98.5	0.0	3.21	0.35	0.78	0.88	2.57	11844	746	10	290	0	0	0	logfile
✔	8JLN	36401	2024-04-06	2023-06-02	3.24	3.56	3.30	3.6	0.002	0.64	0.0	0.04	14.20	0.00	2.216	9.18	0.00	5.0	95.0	0.0	-0.14	0.54	0.74	1.32	3.6	0.002	0.56	0.0	0.04	16.29	0.00	2.208	8.35	1.92	4.2	95.8	0.0	-0.04	0.94	0.57	0.79	1.14	9117	1152	6	0	1	0	0	logfile
✔	8JLB	36391	2024-04-07	2023-06-02	2.36	2.12	2.25	2.5	0.004	0.69	0.0	0.04	29.91	0.01	1.988	3.26	0.16	1.5	98.5	0.0	0.69	0.76	0.85	3.59	1.7	0.005	0.61	0.0	0.04	28.22	0.00	2.112	4.02	1.95	1.4	98.6	0.0	2.73	1.53	0.77	0.86	3.39	11844	746	10	290	0	0	0	logfile
✔	8JLP	36403	2024-04-06	2023-06-02	3.23	3.50	3.28	3.6	0.004	0.70	0.0	0.04	15.02	0.00	2.209	10.42	0.00	4.8	95.2	0.0	-0.31	0.60	0.71	2.06	3.6	0.002	0.59	0.0	0.04	16.63	0.00	2.224	10.42	2.64	5.1	94.9	0.0	0.11	0.36	0.57	0.74	1.72	7343	921	5	0	1	0	0	logfile
✔	8T12	40952	2024-04-07	2023-06-01	3.34	3.81	3.37	3.7	0.004	0.69	0.0	0.04	17.59	0.00	2.147	9.16	0.60	5.6	94.0	0.4	0.31	0.70	0.73	1.49	3.7	0.003	0.60	0.0	0.04	18.10	0.00	2.136	6.70	2.81	5.7	94.1	0.2	0.49	0.58	0.79	0.83	1.74	10813	1343	3	0	2	0	0	logfile
✔	8JKE	36370	2024-04-15	2023-06-01	3.67	3.81	3.70	3.7	0.005	0.77	1.0	0.05	16.83	0.01	2.217	7.88	0.24	3.1	96.9	0.0	-0.87	0.82	0.79	1.28	3.7	0.003	0.65	0.0	0.04	18.43	0.00	2.154	13.62	2.15	3.2	96.8	0.0	0.25	0.44	0.82	0.80	0.96	33932	4041	14	122	3	0	0	logfile
✔	8JKM	36373	2024-04-16	2023-06-01	3.98	4.16	4.03	4.1	0.003	0.61	4.0	0.04	13.65	0.00	1.965	16.36	0.00	6.4	93.4	0.2	-0.33	0.56	0.61	0.59	4.1	0.003	0.63	0.0	0.04	15.96	0.00	1.966	17.61	3.81	6.1	93.8	0.0	-0.05	1.02	0.58	0.66	0.79	38172	2344	4	0	0	0	19252	logfile
✔	8JKB	36367	2024-04-09	2023-06-01	3.27	4.57	3.29	3.9	0.004	0.67	0.0	0.05	13.37	0.00	2.142	8.50	0.16	4.0	96.0	0.0	-1.95	0.84	0.71	2.10	4.0	0.006	0.85	0.0	0.04	15.59	0.00	2.122	16.44	2.30	5.0	95.0	0.0	-1.67	0.92	0.90	0.86	1.86	17169	2220	15	0	0	0	0	logfile
✔	8JKD	36368	2024-04-07	2023-06-01	2.6	2.72	2.55	2.8	0.003	0.63	0.0	0.05	14.09	0.00	2.206	7.36	0.00	6.7	93.3	0.0	-0.71	0.73	0.83	3.91	2.7	0.004	0.68	0.0	0.05	17.11	0.00	2.169	7.27	2.87	6.7	93.3	0.0	-0.68	1.01	0.74	0.85	3.68	10960	1403	3	0	0	0	0	logfile
✔	8T13	40953	2024-04-07	2023-06-01	3.45	3.82	3.47	3.7	0.002	0.53	0.0	0.04	18.19	0.00	2.200	7.19	0.10	4.8	95.2	0.0	0.32	0.65	0.67	1.71	3.7	0.002	0.52	0.0	0.04	18.58	0.00	2.131	6.97	2.90	5.4	94.6	0.0	0.30	0.40	0.76	0.80	1.84	9304	1167	3	0	2	0	0	logfile
✔	8P7W	17537	2024-04-08	2023-05-31	3.04	3.33	3.02	3.3	0.004	0.72	0.0	0.04	15.99	0.00	2.206	9.76	0.45	6.1	93.9	0.0	-1.44	0.65	0.86	2.29	3.4	0.003	0.63	0.0	0.04	16.54	0.00	2.087	10.49	3.44	6.1	93.9	0.0	-0.45	0.36	0.66	0.87	2.29	14380	1852	8	0	0	0	0	logfile

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