Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P82	17539	2024-04-12	2023-05-31	3.36	4.33	3.37	3.4	0.013	1.11	2.0	0.09	12.80	0.01	2.221	0.89	0.07	3.8	96.0	0.2	-0.97	0.84	0.70	0.97	3.4	0.003	0.66	0.0	0.04	14.70	0.00	2.142	6.55	0.29	3.0	97.0	0.0	1.53	1.81	0.85	0.70	1.08	25156	3192	4	0	6	0	0	logfile
✔	8P83	17540	2024-04-15	2023-05-31	3.87	4.82	3.91	3.8	0.003	0.66	3.0	0.06	4.70	0.00	2.470	0.84	0.00	2.0	97.9	0.1	0.35	0.81	0.58	—	3.8	0.003	0.79	0.0	0.04	5.70	0.01	2.230	9.10	0.00	7.0	93.0	0.0	-1.97	2.83	0.85	0.58	—	35656	7036	4	0	0	0	0	logfile
✔	8T06	40936	2024-04-06	2023-05-31	3.32	3.61	3.29	3.6	0.014	1.73	0.0	0.08	13.20	0.00	2.510	0.67	0.96	3.2	96.8	0.0	-0.80	0.50	0.74	3.51	3.5	0.003	0.63	0.0	0.04	15.44	0.00	2.181	8.14	1.50	2.6	97.4	0.0	1.98	0.70	0.65	0.86	2.07	6712	852	8	0	2	0	0	logfile
✔	8T04	40934	2024-04-06	2023-05-31	2.98	3.38	3.00	3.3	0.014	1.83	0.0	0.23	16.39	0.00	2.320	2.10	0.27	5.4	94.6	0.0	-1.07	0.41	0.70	3.54	3.3	0.003	0.55	0.0	0.04	16.23	0.00	2.296	6.67	1.91	2.1	97.9	0.0	1.25	0.49	0.56	0.82	2.43	6874	852	8	0	6	0	0	logfile
✔	8T07	40937	2024-04-06	2023-05-31	3.38	3.84	3.51	3.8	0.014	1.71	0.0	0.08	12.73	0.00	2.368	0.90	0.27	3.8	96.2	0.0	-1.32	0.52	0.76	2.89	3.8	0.002	0.57	0.0	0.04	15.06	0.00	2.232	7.02	1.78	2.5	97.5	0.0	1.39	0.56	0.66	0.83	1.11	6710	852	8	0	2	0	0	logfile
✔	8P7W	17537	2024-04-08	2023-05-31	3.04	3.33	3.02	3.3	0.004	0.72	0.0	0.04	15.99	0.00	2.206	9.76	0.45	6.1	93.9	0.0	-1.44	0.65	0.86	2.29	3.4	0.003	0.63	0.0	0.04	16.54	0.00	2.087	10.49	3.44	6.1	93.9	0.0	-0.45	0.36	0.66	0.87	2.29	14380	1852	8	0	0	0	0	logfile
✔	8P8A	17543	2024-04-08	2023-05-31	3.2	3.30	3.14	3.3	0.006	1.01	0.0	0.06	17.65	0.01	2.213	4.01	10.55	7.2	92.7	0.1	-3.83	0.61	0.84	3.07	3.3	0.004	0.65	0.0	0.04	16.61	0.00	2.152	6.04	4.55	6.8	93.1	0.1	-0.40	1.57	0.60	0.87	3.15	13337	1709	9	0	4	0	0	logfile
✔	8T08	40938	2024-04-06	2023-05-31	3.0	3.26	3.12	3.3	0.003	0.47	0.0	0.04	12.80	0.00	2.014	5.35	0.07	1.8	98.2	0.0	1.10	0.74	0.79	3.01	3.3	0.005	0.64	0.0	0.05	15.67	0.00	2.108	8.99	2.18	2.3	97.7	0.0	0.99	1.20	0.75	0.84	2.48	55104	7044	34	0	0	0	0	logfile
✔	8T05	40935	2024-04-05	2023-05-31	3.22	3.71	3.26	3.7	0.014	1.85	1.0	0.26	16.96	0.01	2.120	2.80	0.93	5.8	93.9	0.3	-2.10	0.45	0.74	3.17	3.6	0.003	0.60	0.0	0.04	16.21	0.00	2.053	6.57	1.68	4.5	95.5	0.0	1.14	1.31	0.59	0.84	2.53	5104	631	6	0	6	0	0	logfile
✔	8JJo	36361	2024-04-05	2023-05-31	3.4	3.75	3.53	3.8	0.003	0.64	0.0	0.04	17.70	0.00	2.184	10.68	0.31	5.7	94.3	0.0	-0.11	0.40	0.71	1.06	3.8	0.003	0.53	0.0	0.04	18.13	0.00	2.180	8.55	3.72	5.7	94.1	0.3	1.01	0.35	0.36	0.73	1.41	3016	375	2	0	1	0	0	logfile
✔	8P6V	17508	2024-04-05	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.004	0.62	0.0	0.04	16.78	0.00	2.121	7.43	2.53	1.6	98.2	0.2	1.46	0.78	0.64	0.78	5.21	5243	630	7	0	2	138	0	logfile
✔	8P6Y	17511	2024-04-05	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.003	0.61	0.0	0.04	17.11	0.00	2.142	5.09	0.90	1.1	98.7	0.2	1.66	0.74	0.68	0.85	6.31	5266	630	7	0	3	158	0	logfile
✔	8JJL	36360	2024-04-05	2023-05-30	3.2	3.53	3.25	3.5	0.004	0.75	0.0	0.04	14.77	0.01	2.173	11.69	1.55	4.0	96.0	0.0	1.28	0.52	0.78	1.93	3.5	0.003	0.62	0.0	0.04	16.80	0.00	2.127	9.88	4.02	4.6	95.4	0.0	1.64	1.05	0.48	0.82	2.02	3026	375	2	0	1	0	0	logfile
✔	8JJE	36345	2024-04-06	2023-05-30	3.4	3.75	3.47	3.7	0.011	1.51	1.0	0.09	16.24	0.01	1.829	0.77	1.86	2.5	97.5	0.0	-2.00	0.70	0.83	3.16	3.7	0.003	0.61	0.0	0.04	15.66	0.00	2.015	5.08	3.44	2.7	97.3	0.0	0.43	1.34	0.72	0.82	2.37	6670	794	8	0	20	1	0	logfile
✔	8P6W	17509	2024-04-05	2023-05-30	1.9	1.79	1.87	1.8	0.004	0.69	0.0	0.04	16.84	0.01	2.239	6.37	0.90	1.9	97.9	0.2	1.39	0.64	0.75	6.19	1.8	0.004	0.61	0.0	0.04	17.07	0.00	2.012	6.18	1.08	2.1	97.7	0.2	1.48	0.16	0.65	0.77	6.30	5243	630	7	0	2	139	0	logfile
✔	8P77	17520	2024-04-05	2023-05-30	1.8	1.83	1.92	1.9	0.006	0.58	0.0	0.04	16.68	0.00	2.228	5.35	1.08	1.3	98.5	0.2	2.01	0.68	0.79	5.73	1.9	0.003	0.57	0.0	0.04	16.88	0.00	2.152	6.32	1.99	1.3	98.5	0.2	1.69	0.72	0.68	0.80	5.84	5271	630	7	0	2	137	0	logfile
✔	8P6X	17510	2024-04-05	2023-05-30	1.9	1.85	1.92	1.9	0.005	0.63	0.0	0.04	16.39	0.00	2.211	7.57	0.72	2.3	97.6	0.2	1.71	0.68	0.78	5.12	1.9	0.006	0.76	0.0	0.05	16.57	0.01	2.061	9.13	1.80	1.6	98.2	0.2	1.09	0.74	0.68	0.79	5.17	5284	631	7	0	2	144	0	logfile
✔	8P6Z	17512	2024-04-05	2023-05-30	2.1	2.08	2.11	2.1	0.005	0.64	0.0	0.04	17.68	0.00	2.241	6.38	0.72	1.5	98.4	0.2	1.30	0.68	0.80	4.74	2.1	0.005	0.72	0.0	0.05	17.50	0.01	2.162	8.54	2.89	1.5	98.4	0.2	0.97	0.17	0.68	0.81	5.06	5228	630	7	0	2	127	0	logfile
✔	8P78	17521	2024-04-05	2023-05-30	1.9	1.80	1.91	1.9	0.004	0.84	0.0	0.04	16.58	0.00	2.208	5.15	0.72	1.9	97.9	0.2	1.79	0.66	0.80	5.87	1.9	0.003	0.62	0.0	0.04	16.68	0.00	2.215	5.93	0.54	1.9	97.9	0.2	1.68	0.21	0.67	0.81	5.91	5304	630	7	0	2	170	0	logfile
✔	8P74	17517	2024-04-05	2023-05-30	2.2	2.04	2.20	2.1	0.004	0.70	0.0	0.04	16.53	0.00	2.196	8.79	0.91	1.5	98.4	0.2	1.79	0.63	0.80	5.22	2.1	0.004	0.63	0.0	0.04	16.79	0.01	2.199	9.19	1.64	1.3	98.5	0.2	1.48	0.11	0.62	0.80	5.20	5115	626	7	0	2	44	0	logfile

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