Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P6W	17509	2024-04-05	2023-05-30	1.9	1.79	1.87	1.8	0.004	0.69	0.0	0.04	16.84	0.01	2.239	6.37	0.90	1.9	97.9	0.2	1.39	0.64	0.75	6.19	1.8	0.004	0.61	0.0	0.04	17.07	0.00	2.012	6.18	1.08	2.1	97.7	0.2	1.48	0.16	0.65	0.77	6.30	5243	630	7	0	2	139	0	logfile
✔	8P6Y	17511	2024-04-05	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.003	0.61	0.0	0.04	17.11	0.00	2.142	5.09	0.90	1.1	98.7	0.2	1.66	0.74	0.68	0.85	6.31	5266	630	7	0	3	158	0	logfile
✔	8P74	17517	2024-04-05	2023-05-30	2.2	2.04	2.20	2.1	0.004	0.70	0.0	0.04	16.53	0.00	2.196	8.79	0.91	1.5	98.4	0.2	1.79	0.63	0.80	5.22	2.1	0.004	0.63	0.0	0.04	16.79	0.01	2.199	9.19	1.64	1.3	98.5	0.2	1.48	0.11	0.62	0.80	5.20	5115	626	7	0	2	44	0	logfile
✔	8P70	17513	2024-04-05	2023-05-30	2.0	1.98	2.01	2.0	0.007	0.72	0.0	0.04	17.43	0.00	2.202	7.34	0.90	1.3	98.5	0.2	1.67	0.67	0.79	5.37	2.0	0.003	0.57	0.0	0.04	17.20	0.00	2.213	7.24	1.62	1.3	98.5	0.2	1.58	0.16	0.67	0.80	5.12	5282	630	7	0	2	154	0	logfile
✔	8JJE	36345	2024-04-06	2023-05-30	3.4	3.75	3.47	3.7	0.011	1.51	1.0	0.09	16.24	0.01	1.829	0.77	1.86	2.5	97.5	0.0	-2.00	0.70	0.83	3.16	3.7	0.003	0.61	0.0	0.04	15.66	0.00	2.015	5.08	3.44	2.7	97.3	0.0	0.43	1.34	0.72	0.82	2.37	6670	794	8	0	20	1	0	logfile
✔	8JJL	36360	2024-04-05	2023-05-30	3.2	3.53	3.25	3.5	0.004	0.75	0.0	0.04	14.77	0.01	2.173	11.69	1.55	4.0	96.0	0.0	1.28	0.52	0.78	1.93	3.5	0.003	0.62	0.0	0.04	16.80	0.00	2.127	9.88	4.02	4.6	95.4	0.0	1.64	1.05	0.48	0.82	2.02	3026	375	2	0	1	0	0	logfile
✔	8P75	17518	2024-04-05	2023-05-30	2.0	1.89	2.08	2.0	0.004	0.70	0.0	0.04	16.36	0.00	2.198	7.16	0.90	1.3	98.5	0.2	1.61	0.62	0.78	4.80	2.0	0.006	0.79	0.0	0.05	16.79	0.01	2.161	10.20	1.81	1.9	97.9	0.2	0.82	0.20	0.62	0.79	5.15	5181	630	7	0	2	76	0	logfile
✔	8P6X	17510	2024-04-05	2023-05-30	1.9	1.85	1.92	1.9	0.005	0.63	0.0	0.04	16.39	0.00	2.211	7.57	0.72	2.3	97.6	0.2	1.71	0.68	0.78	5.12	1.9	0.006	0.76	0.0	0.05	16.57	0.01	2.061	9.13	1.80	1.6	98.2	0.2	1.09	0.74	0.68	0.79	5.17	5284	631	7	0	2	144	0	logfile
✔	8SZC	40908	2024-04-11	2023-05-29	3.06	2.41	—	3.0	0.011	1.34	0.0	0.04	21.69	0.02	2.227	5.48	0.00	7.2	92.8	0.0	-0.12	0.78	0.79	2.06	3.0	0.003	0.50	0.0	0.04	18.63	0.00	2.072	10.77	1.43	6.7	93.3	0.0	0.45	0.87	0.78	0.79	1.93	20462	1235	4	0	25	0	9951	logfile
✔	8SZi	40917	2024-04-10	2023-05-29	3.5	2.34	—	1.9	0.008	0.97	2.0	0.12	13.69	0.01	1.971	4.45	0.05	2.7	97.3	0.0	0.27	0.78	0.78	2.50	1.8	0.003	0.53	0.0	0.04	15.00	0.00	2.157	4.73	1.07	3.2	96.8	0.0	0.54	0.56	0.79	0.78	2.32	17868	2249	10	0	18	0	0	logfile
✔	8SZJ	40918	2024-04-17	2023-05-29	3.35	4.19	3.46	4.0	0.004	0.66	2.0	0.05	14.37	0.01	1.297	5.32	0.15	5.5	94.5	0.0	-0.42	0.49	0.77	1.68	4.0	0.004	0.78	0.0	0.05	17.20	0.00	2.141	15.41	4.30	6.2	93.7	0.1	0.80	0.70	0.51	0.79	1.60	36204	4656	24	0	12	0	0	logfile
✔	8JJ8	36342	2024-04-05	2023-05-29	3.2	3.51	3.45	3.5	0.005	0.90	0.0	0.05	15.21	0.00	2.107	14.28	1.86	6.7	93.3	0.0	0.54	0.51	0.75	2.04	3.5	0.003	0.61	0.0	0.04	16.79	0.00	2.207	11.00	1.86	5.1	94.9	0.0	1.83	1.18	0.44	0.74	1.57	3023	375	2	0	1	0	0	logfile
✔	8SZG	40915	2024-04-09	2023-05-29	3.6	2.47	—	1.9	0.006	0.85	10.0	0.11	14.08	0.01	2.281	5.68	0.11	4.8	95.2	0.0	-0.56	0.78	0.78	2.75	1.9	0.003	0.55	0.0	0.04	15.02	0.00	2.182	5.56	1.45	3.9	96.1	0.0	-0.03	0.41	0.78	0.78	2.32	17571	2237	10	0	22	1	0	logfile
✔	8SZB	40907	2024-04-05	2023-05-29	3.07	3.36	3.01	3.5	0.003	0.51	0.0	0.03	16.77	0.00	2.154	9.22	0.37	1.5	98.5	0.0	2.06	0.49	0.73	0.50	3.5	0.003	0.58	0.0	0.04	16.88	0.00	2.056	8.73	3.15	1.3	98.7	0.0	4.03	0.64	0.52	0.79	1.41	4962	612	12	0	6	0	0	logfile
✔	8SZA	40905	2024-04-05	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	15.14	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.60	0.0	0.04	15.63	0.00	2.277	8.69	2.16	0.3	99.7	0.0	2.71	0.46	0.49	0.77	1.54	4800	606	11	0	6	0	0	logfile
✔	8SZH	40916	2024-04-10	2023-05-29	3.1	2.21	—	1.8	0.006	0.78	2.0	0.11	14.62	0.01	2.196	4.04	0.00	3.8	96.2	0.0	-0.33	0.82	0.82	2.95	1.8	0.004	0.56	0.0	0.04	15.70	0.00	2.193	3.73	1.71	4.1	95.9	0.0	-0.16	0.93	0.83	0.84	2.78	18062	2267	10	0	24	1	0	logfile
✔	8JJ5	36340	2024-04-08	2023-05-29	3.5	3.74	3.51	3.7	0.021	2.18	39.0	0.19	17.07	0.02	2.397	1.75	1.22	8.9	91.0	0.1	-2.93	0.38	0.61	1.08	3.7	0.003	0.69	0.0	0.04	16.11	0.00	2.016	14.84	2.44	5.1	94.9	0.0	0.04	1.07	0.40	0.64	0.81	13594	866	10	0	14	0	6679	logfile
✔	8SZF	40914	2024-04-08	2023-05-29	2.8	2.08	—	1.7	0.005	0.70	1.0	0.05	13.19	0.01	2.268	4.64	0.00	3.1	96.9	0.0	0.03	0.79	0.83	3.52	1.7	0.003	0.53	0.0	0.04	14.97	0.00	2.234	3.25	1.41	2.8	97.2	0.0	0.37	0.32	0.79	0.84	3.01	12813	1602	9	0	20	0	0	logfile
✔	8JiV	36331	2024-04-07	2023-05-28	2.84	2.46	2.62	2.6	0.010	0.82	0.0	0.04	24.18	0.03	1.858	6.57	3.34	4.2	95.8	0.0	-0.83	0.74	0.85	3.85	2.6	0.004	0.86	0.0	0.04	24.05	0.01	1.870	6.75	3.06	4.3	95.7	0.0	0.04	0.15	0.74	0.85	3.82	116711	6191	58	3134	317	0	0	logfile
✔	8JiW	36332	2024-04-09	2023-05-28	2.88	3.30	3.04	3.1	0.006	0.83	0.0	0.04	23.34	0.02	1.094	12.78	0.56	7.0	92.9	0.1	-0.87	0.77	0.80	1.94	3.1	0.006	0.81	0.0	0.04	23.08	0.01	1.019	14.36	5.45	8.2	91.7	0.1	-0.97	0.27	0.78	0.83	1.89	68755	4412	37	1571	87	0	0	logfile

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