Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JiR	36325	2024-04-06	2023-05-27	2.57	3.54	2.61	3.3	0.010	1.02	3.0	0.06	15.93	0.01	1.972	12.47	6.61	7.0	92.5	0.5	-1.76	0.67	0.77	3.14	3.3	0.003	0.65	0.0	0.04	16.47	0.00	2.234	9.41	2.06	4.6	95.4	0.0	0.46	0.55	0.67	0.79	2.68	9014	1167	7	0	1	0	0	logfile
✔	8JiS	36326	2024-04-07	2023-05-27	2.46	3.46	2.49	3.2	0.009	1.20	0.0	0.08	19.44	0.01	2.266	8.79	14.75	6.9	92.2	0.9	-1.22	0.66	0.77	2.14	3.2	0.004	0.68	0.0	0.04	17.06	0.00	2.190	8.85	4.47	5.0	94.9	0.1	1.01	0.57	0.66	0.78	2.16	9158	1174	6	0	0	0	0	logfile
✔	8JiT	36327	2024-04-07	2023-05-27	2.91	3.75	2.95	3.5	0.005	0.79	1.0	0.05	14.72	0.00	2.204	30.83	4.69	5.5	94.0	0.5	-0.47	0.69	0.80	2.15	3.5	0.004	0.71	0.0	0.04	15.72	0.00	2.103	10.88	3.86	4.5	95.3	0.2	0.65	0.60	0.70	0.83	2.12	9193	1176	7	0	1	0	0	logfile
✔	8JiU	36328	2024-04-06	2023-05-27	2.76	3.73	2.83	3.5	0.008	1.14	4.0	0.08	18.35	0.01	2.217	11.25	15.73	6.4	92.3	1.3	-2.62	0.69	0.80	2.29	3.5	0.003	0.77	0.0	0.04	16.06	0.00	2.148	11.47	1.62	4.0	95.7	0.3	0.14	0.76	0.66	0.79	2.14	9075	1177	7	0	2	0	0	logfile
✔	8JiP	36323	2024-04-07	2023-05-27	2.85	3.83	2.89	3.6	0.006	1.05	1.0	0.07	18.75	0.00	2.156	16.09	14.94	6.6	92.6	0.8	-2.27	0.68	0.75	2.00	3.6	0.003	0.70	0.0	0.04	16.80	0.00	2.172	8.51	2.51	3.6	96.4	0.0	0.13	0.78	0.66	0.81	1.85	9362	1180	7	0	1	0	0	logfile
✔	8JiQ	36324	2024-04-06	2023-05-27	3.4	3.86	3.37	3.7	0.003	0.64	0.0	0.04	15.17	0.00	2.202	10.10	2.47	4.1	95.5	0.4	-0.03	0.82	0.80	2.08	3.7	0.003	0.59	0.0	0.04	16.03	0.00	2.116	10.69	1.46	3.5	96.5	0.0	0.56	0.41	0.82	0.83	1.72	8707	1134	6	0	0	0	0	logfile
✔	8JiL	36317	2024-04-06	2023-05-26	3.5	2.27	—	3.1	0.006	0.88	0.0	0.05	13.68	0.00	2.209	13.85	0.10	4.9	95.1	0.0	-1.81	0.73	0.72	2.29	3.1	0.003	0.63	0.0	0.04	15.53	0.00	2.076	8.62	1.83	3.8	96.2	0.0	-0.74	1.00	0.73	0.71	1.90	9028	1141	6	0	2	1	0	logfile
✔	8Jii	36312	2024-04-06	2023-05-26	3.17	2.37	—	3.4	0.006	0.84	0.0	0.05	14.12	0.00	1.963	7.59	0.10	4.6	95.4	0.0	-1.97	0.74	0.78	3.14	3.4	0.003	0.57	0.0	0.04	15.60	0.00	2.167	5.87	1.72	4.2	95.8	0.0	-0.97	0.30	0.76	0.82	2.56	9083	1144	6	0	3	1	0	logfile
✔	8JiF	36311	2024-04-08	2023-05-26	2.28	3.16	2.24	2.8	0.005	1.14	0.0	0.05	17.82	0.01	1.676	18.52	12.43	8.7	88.5	2.9	-2.44	0.74	0.73	4.13	2.8	0.003	0.62	0.0	0.04	16.41	0.00	2.099	6.40	3.05	7.0	92.5	0.5	-0.67	0.73	0.76	0.89	4.50	14630	1831	5	0	1	0	0	logfile
✔	8JiM	36318	2024-04-06	2023-05-26	2.98	2.35	—	3.2	0.007	0.91	0.0	0.05	13.51	0.00	2.232	10.37	0.41	5.8	94.2	0.1	-1.91	0.75	0.79	2.75	3.2	0.002	0.61	0.0	0.04	16.30	0.00	2.213	6.38	1.93	2.3	97.7	0.0	-0.35	1.00	0.75	0.82	2.19	9051	1144	6	0	2	1	0	logfile
✔	8JiA	36304	2024-04-07	2023-05-26	3.9	3.78	3.74	3.3	0.005	1.06	0.0	0.06	12.52	0.01	2.306	6.26	0.33	7.1	92.6	0.2	-3.20	0.75	0.78	0.95	3.4	0.005	0.82	1.0	0.04	14.23	0.00	2.014	17.99	3.41	6.8	92.9	0.3	-0.65	0.57	0.76	0.81	0.90	9587	1327	7	0	2	0	0	logfile
✔	8SYN	40885	2024-04-07	2023-05-25	2.94	2.38	2.98	2.0	0.004	0.62	0.0	0.04	13.19	0.00	2.182	9.38	0.00	2.7	97.3	0.0	0.88	0.71	0.70	2.87	2.0	0.004	0.70	0.0	0.05	16.38	0.00	2.144	11.71	2.39	2.4	97.6	0.0	1.25	1.16	0.74	0.75	2.82	10069	1259	3	0	0	0	0	logfile
✔	8Ji0	36303	2024-04-05	2023-05-25	3.0	3.17	2.87	3.1	0.009	1.20	8.0	0.09	16.50	0.01	1.905	10.06	6.46	8.9	90.4	0.6	-1.71	0.66	0.72	3.00	3.1	0.003	0.68	0.0	0.05	17.07	0.00	2.092	9.67	3.35	7.1	92.9	0.0	-0.74	1.27	0.66	0.74	3.08	3934	498	2	0	0	0	0	logfile
✔	8JHR	36285	2024-04-05	2023-05-25	3.52	3.75	3.52	3.7	0.006	0.78	0.0	0.05	17.68	0.00	2.208	10.96	0.29	2.6	97.4	0.0	1.78	0.61	0.82	1.53	3.7	0.003	0.67	0.0	0.04	17.68	0.00	2.183	9.61	5.78	2.3	97.7	0.0	2.40	0.29	0.60	0.81	1.05	3302	430	2	0	1	0	0	logfile
✔	8SYo	40886	2024-04-07	2023-05-25	2.94	2.44	—	2.1	0.004	0.62	0.0	0.04	13.19	0.00	2.182	9.38	0.00	2.7	97.3	0.0	0.88	0.77	0.76	2.68	2.0	0.005	0.77	0.0	0.05	17.07	0.00	2.174	13.83	2.57	3.4	96.6	0.0	1.22	1.28	0.78	0.78	2.49	10069	1259	3	0	0	0	0	logfile
✔	8SYM	40884	2024-04-05	2023-05-25	3.2	2.36	3.28	1.9	0.004	0.54	0.0	0.04	13.67	0.00	2.253	8.35	0.00	1.8	98.2	0.0	1.78	0.77	0.78	2.57	1.9	0.005	0.60	0.0	0.04	16.44	0.00	2.173	11.36	1.20	1.6	98.4	0.0	1.86	0.41	0.78	0.79	2.41	4486	560	2	0	0	0	0	logfile
✔	8JHU	36294	2024-04-06	2023-05-25	3.1	3.30	3.08	3.3	0.003	0.59	0.0	0.04	15.64	0.01	2.200	10.88	0.82	5.4	94.1	0.5	-0.27	0.69	0.84	2.83	3.3	0.006	0.63	0.0	0.04	16.05	0.00	2.116	11.64	2.33	7.0	93.0	0.0	-0.13	0.38	0.71	0.87	3.43	6554	811	1	0	0	0	0	logfile
✔	8JHY	36300	2024-04-06	2023-05-25	2.87	2.15	—	2.8	0.007	0.96	0.0	0.05	13.90	0.01	2.078	10.20	0.00	5.7	94.3	0.0	-2.25	0.75	0.77	3.68	1.9	0.004	0.70	0.0	0.05	15.90	0.00	2.084	7.59	2.54	4.7	95.3	0.0	-0.49	0.38	0.76	0.80	2.48	9073	1144	6	0	2	0	0	logfile
✔	8JHQ	36284	2024-04-05	2023-05-25	3.6	3.97	3.52	3.9	0.004	0.59	0.0	0.04	17.86	0.00	2.196	7.93	0.00	4.1	95.9	0.0	1.50	0.56	0.85	2.60	3.9	0.004	0.63	0.0	0.04	17.29	0.00	2.110	8.37	5.62	4.5	95.5	0.0	2.41	0.90	0.57	0.86	2.02	3420	446	2	0	1	0	0	logfile
✔	8SYL	40882	2024-04-16	2023-05-25	2.9	3.32	2.95	3.1	0.007	0.61	0.0	0.04	23.09	0.02	1.429	8.36	0.07	4.0	95.9	0.1	-0.56	0.88	0.91	3.75	3.1	0.003	0.63	0.0	0.03	23.10	0.01	1.897	10.73	3.39	3.8	96.1	0.1	0.01	0.30	0.84	0.90	3.20	144591	5550	76	4729	480	74	0	logfile

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