Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Ji0	36303	2024-04-05	2023-05-25	3.0	3.17	2.87	3.1	0.009	1.20	8.0	0.09	16.50	0.01	1.905	10.06	6.46	8.9	90.4	0.6	-1.71	0.66	0.72	3.00	3.1	0.003	0.68	0.0	0.05	17.07	0.00	2.092	9.67	3.35	7.1	92.9	0.0	-0.74	1.27	0.66	0.74	3.08	3934	498	2	0	0	0	0	logfile
✔	8JHR	36285	2024-04-05	2023-05-25	3.52	3.75	3.52	3.7	0.006	0.78	0.0	0.05	17.68	0.00	2.208	10.96	0.29	2.6	97.4	0.0	1.78	0.61	0.82	1.53	3.7	0.003	0.67	0.0	0.04	17.68	0.00	2.183	9.61	5.78	2.3	97.7	0.0	2.40	0.29	0.60	0.81	1.05	3302	430	2	0	1	0	0	logfile
✔	8SYi	40874	2024-04-13	2023-05-25	2.94	3.75	3.00	3.4	0.004	0.64	0.0	0.04	20.72	0.01	2.138	6.87	6.06	7.7	91.9	0.3	-1.52	0.89	0.87	2.21	3.5	0.005	0.81	1.0	0.05	19.97	0.01	1.832	8.47	3.75	6.9	92.9	0.2	-0.82	0.58	0.87	0.90	1.96	29500	3537	12	91	3	0	0	logfile
✔	8P5X	17456	2024-04-06	2023-05-24	2.29	2.20	2.36	1.9	0.013	1.76	0.0	0.09	14.15	0.00	2.250	0.66	0.21	3.1	96.9	0.0	-1.93	0.89	0.90	4.98	2.0	0.003	0.53	0.0	0.04	16.28	0.00	2.000	2.56	0.79	2.1	97.9	0.0	0.95	0.42	0.87	0.88	4.26	55346	7110	18	0	12	0	0	logfile
✔	8SY5	40862	2024-04-11	2023-05-24	2.7	3.64	2.80	3.3	0.017	0.81	0.0	0.04	16.07	0.00	1.432	3.13	0.00	4.0	96.0	0.0	0.01	0.82	0.80	3.70	3.3	0.002	0.55	0.0	0.04	16.74	0.00	1.860	5.97	0.49	3.6	96.4	0.0	0.31	0.39	0.80	0.87	3.32	21411	2682	16	45	3	375	0	logfile
✔	8P5V	17454	2024-04-05	2023-05-24	2.07	2.90	2.14	2.5	0.009	1.12	0.0	0.06	14.33	0.01	2.018	1.82	0.53	2.7	97.3	0.0	0.06	0.90	0.95	6.07	2.6	0.003	0.49	0.0	0.04	14.97	0.00	1.915	3.32	0.51	2.1	97.9	0.0	1.34	1.70	0.86	0.93	5.53	54248	6726	18	0	24	1280	0	logfile
✔	8P5W	17455	2024-04-05	2023-05-24	2.26	2.22	2.31	1.9	0.009	1.18	0.0	0.08	14.02	0.01	2.114	0.77	0.11	2.7	97.2	0.1	-1.65	0.90	0.91	5.09	2.0	0.004	0.58	0.0	0.04	16.39	0.00	1.955	2.79	1.14	2.3	97.7	0.0	0.82	0.40	0.89	0.89	4.38	52656	6714	12	0	18	0	0	logfile
✔	8P5U	17453	2024-04-05	2023-05-24	2.17	2.20	2.21	1.9	0.032	1.60	0.0	0.08	15.33	0.01	1.601	3.66	0.31	3.0	97.0	0.0	-1.97	0.91	0.92	5.23	1.9	0.002	0.54	0.0	0.04	17.01	0.00	1.981	4.75	1.05	2.1	97.9	0.0	0.97	0.41	0.89	0.88	4.28	52878	6714	12	0	24	0	0	logfile
✔	8SXT	40858	2024-04-05	2023-05-24	3.3	2.61	3.32	3.0	0.003	0.60	0.0	0.04	17.79	0.00	2.039	11.35	0.45	3.7	96.1	0.1	0.31	0.74	0.76	2.14	2.2	0.003	0.60	0.0	0.04	18.30	0.00	2.043	11.58	4.83	3.9	96.0	0.1	0.42	0.61	0.75	0.78	2.12	6382	726	5	18	2	0	0	logfile
✔	8SXU	40859	2024-04-05	2023-05-24	3.66	2.81	3.70	3.8	0.003	0.57	0.0	0.04	18.38	0.00	2.187	15.99	0.15	5.4	94.6	0.0	-0.09	0.64	0.66	0.42	1.8	0.003	0.69	0.0	0.04	18.39	0.00	2.028	20.15	4.37	4.8	95.2	0.0	-0.52	0.65	0.66	0.65	0.42	6207	726	2	10	0	0	0	logfile
✔	8JHN	36280	2024-04-06	2023-05-24	3.75	4.02	3.78	4.0	0.003	0.73	0.0	0.04	12.82	0.00	2.198	6.15	0.60	3.4	96.6	0.0	0.60	0.74	0.81	2.82	4.0	0.003	0.55	0.0	0.04	14.58	0.00	2.210	8.42	2.38	2.6	97.4	0.0	0.89	0.40	0.75	0.82	2.63	7773	1120	6	0	1	0	0	logfile
✔	8JHi	36266	2024-04-06	2023-05-23	3.2	3.84	3.46	3.8	0.004	0.71	0.0	0.05	14.30	0.01	2.158	7.15	0.00	5.4	94.6	0.0	-0.87	0.65	0.79	1.91	3.8	0.003	0.66	0.0	0.04	15.86	0.00	2.139	12.84	2.59	5.2	94.8	0.0	0.07	0.45	0.62	0.80	1.60	8562	1077	5	0	0	0	0	logfile
✔	8JHG	36265	2024-04-09	2023-05-23	3.58	3.41	3.62	3.4	0.004	0.59	0.0	0.03	26.86	0.00	2.152	8.47	0.92	5.4	94.6	0.0	0.29	0.81	0.83	1.74	3.4	0.003	0.57	0.0	0.03	26.84	0.00	2.175	8.77	1.50	4.0	96.0	0.0	0.67	0.99	0.81	0.83	1.23	14829	1040	12	320	2	0	0	logfile
✔	8JHF	36264	2024-04-09	2023-05-23	3.68	3.48	3.63	3.5	0.004	0.61	0.0	0.03	27.23	0.00	2.111	8.03	0.70	4.8	95.2	0.0	0.59	0.80	0.82	1.35	3.5	0.003	0.56	0.0	0.03	27.66	0.00	2.122	7.95	2.22	4.6	95.3	0.1	0.96	1.00	0.79	0.82	1.04	14703	1029	12	320	2	0	0	logfile
✔	8P53	17445	2024-04-09	2023-05-23	2.7	2.29	2.79	2.0	0.004	0.65	0.0	0.04	13.22	0.00	1.943	8.14	0.11	3.2	96.8	0.0	-0.24	0.79	0.81	3.54	2.0	0.003	0.59	0.0	0.04	16.56	0.00	1.974	8.57	2.28	3.2	96.8	0.0	0.17	1.03	0.80	0.82	3.25	16299	2071	8	0	4	0	0	logfile
✔	8P4X	17429	2024-04-06	2023-05-23	2.57	2.74	2.57	2.8	0.004	0.56	0.0	0.04	13.12	0.00	2.112	1.65	0.00	3.6	96.4	0.0	-0.11	0.74	0.85	5.24	2.8	0.003	0.58	0.0	0.04	14.99	0.00	2.279	2.00	1.62	1.4	98.6	0.0	0.04	0.35	0.71	0.85	4.36	8756	1052	6	0	4	84	0	logfile
✔	8P51	17436	2024-04-08	2023-05-23	3.55	4.39	3.63	4.0	0.006	0.83	0.0	0.05	13.50	0.01	2.113	4.21	0.00	4.4	95.6	0.0	-1.93	0.82	0.71	2.07	4.0	0.006	0.80	0.0	0.04	15.01	0.00	2.120	10.75	1.05	4.0	95.9	0.1	0.81	1.70	0.89	0.85	1.75	12389	1574	1	0	0	0	0	logfile
✔	8JHB	36261	2024-04-06	2023-05-23	3.3	2.35	3.35	2.1	0.003	0.75	0.0	0.05	14.03	0.00	2.146	6.34	0.11	4.7	95.3	0.0	-0.77	0.72	0.71	1.81	2.1	0.002	0.60	0.0	0.04	16.14	0.00	2.078	10.70	1.50	4.2	95.8	0.0	0.28	0.41	0.72	0.72	1.70	8648	1093	5	0	0	0	0	logfile
✔	8P50	17435	2024-04-08	2023-05-23	4.04	5.40	4.05	3.9	0.004	0.88	0.0	0.05	14.21	0.01	1.901	6.41	0.00	4.7	95.3	0.0	-1.98	0.62	0.03	—	3.9	0.003	0.70	0.0	0.04	13.96	0.00	1.843	8.55	0.07	3.6	96.4	0.1	-0.04	1.31	0.62	0.03	—	13714	1735	3	0	2	0	0	logfile
✔	8P52	17440	2024-04-11	2023-05-23	3.6	3.64	—	3.4	0.002	0.63	0.0	0.04	13.73	0.01	2.166	3.44	0.00	5.6	94.4	0.0	-2.19	0.78	0.55	1.88	3.4	0.003	0.65	0.0	0.04	15.43	0.00	2.103	8.92	1.62	4.2	95.8	0.0	0.20	1.53	0.85	0.74	1.39	22783	2914	1	0	0	0	0	logfile

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