Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P4i	17409	2024-04-17	2023-05-22	3.83	4.09	—	4.0	0.012	1.73	13.0	0.09	14.63	0.01	2.265	0.43	1.50	4.8	94.9	0.2	-2.25	0.75	0.86	3.52	4.0	0.004	0.74	2.0	0.05	15.93	0.00	2.042	5.60	2.48	6.3	93.7	0.0	-1.36	0.56	0.76	0.87	2.85	42976	5389	17	0	0	0	0	logfile
✔	8JH7	36258	2024-04-06	2023-05-22	3.2	2.35	3.28	2.1	0.003	0.77	0.0	0.05	13.57	0.01	2.240	6.25	0.00	5.0	95.0	0.0	-1.48	0.74	0.73	2.56	2.1	0.004	0.70	0.0	0.04	16.26	0.00	2.188	12.63	2.65	5.4	94.6	0.0	0.08	1.06	0.75	0.76	2.55	7663	988	4	0	0	0	0	logfile
✔	8SXH	40852	2024-04-10	2023-05-22	3.94	4.17	3.93	4.1	0.003	0.46	0.0	0.04	13.70	0.00	1.996	7.04	0.00	4.2	95.8	0.0	1.11	0.80	0.77	1.36	4.1	0.003	0.60	0.0	0.04	15.63	0.00	2.095	10.27	1.58	3.8	96.2	0.0	0.91	0.48	0.80	0.77	1.30	19719	2604	12	0	21	0	0	logfile
✔	8SXN	40855	2024-04-09	2023-05-22	4.04	4.34	4.06	4.1	0.012	1.26	0.0	0.06	12.20	0.01	2.369	2.31	0.05	3.0	95.8	1.1	-0.38	0.87	0.82	—	4.1	0.003	0.65	0.0	0.04	13.91	0.00	2.080	11.42	0.05	5.9	93.7	0.4	-0.20	1.87	0.87	0.83	—	17708	2200	6	0	4	0	0	logfile
✔	8SXG	40851	2024-04-07	2023-05-22	4.14	4.41	4.12	4.2	0.002	0.50	0.0	0.04	14.01	0.00	1.889	8.99	0.00	3.3	96.7	0.0	0.78	0.83	0.74	—	4.2	0.002	0.56	0.0	0.04	14.49	0.00	2.136	12.06	0.00	3.3	96.7	0.0	0.73	0.48	0.83	0.76	—	11372	1477	5	0	6	0	0	logfile
✔	8SXF	40850	2024-04-07	2023-05-22	3.92	4.19	3.95	4.0	0.002	0.48	0.0	0.04	15.08	0.00	2.063	9.57	0.00	3.7	96.3	0.0	1.25	0.79	0.72	0.88	4.0	0.002	0.57	0.0	0.04	16.52	0.00	2.189	11.86	2.09	2.9	97.1	0.0	1.28	0.53	0.80	0.74	0.54	11321	1471	5	0	6	0	0	logfile
✔	8SXE	40849	2024-04-06	2023-05-22	3.55	3.79	3.56	3.8	0.002	0.47	0.0	0.04	14.58	0.00	2.089	6.48	0.00	3.6	96.4	0.0	0.44	0.75	0.76	1.64	3.7	0.004	0.60	0.0	0.04	16.62	0.00	2.177	9.24	2.27	5.4	94.6	0.0	0.57	0.50	0.76	0.77	1.47	8285	1094	6	0	7	0	0	logfile
✔	8P4K	17410	2024-04-13	2023-05-22	3.8	3.61	4.17	3.8	0.020	2.62	0.0	0.10	9.97	0.01	2.351	1.00	0.00	1.0	99.0	0.0	0.04	0.30	0.42	1.07	3.6	0.003	1.08	0.0	0.04	13.47	0.00	1.954	16.26	1.08	4.5	95.5	0.0	-0.05	0.82	0.37	0.52	0.93	29211	1797	3	0	0	0	14643	logfile
✔	8JH4	36253	2024-04-17	2023-05-22	3.2	3.52	3.35	3.2	0.005	0.76	1.0	0.05	19.43	0.01	1.977	9.27	0.17	3.0	96.9	0.1	-0.84	0.74	0.65	1.97	3.2	0.003	0.58	0.0	0.04	20.53	0.00	2.008	9.52	0.88	3.4	96.6	0.0	0.95	0.80	0.86	0.82	2.20	44415	4671	29	354	9	0	0	logfile
✔	8SXJ	40854	2024-04-10	2023-05-22	4.0	4.15	4.01	4.2	0.019	1.76	7.0	0.09	13.38	0.02	2.555	0.19	1.10	7.0	92.3	0.7	-1.09	0.63	0.78	—	4.2	0.003	0.74	0.0	0.04	16.22	0.00	2.163	10.07	3.24	5.1	94.9	0.0	-0.55	1.18	0.65	0.82	—	19050	2415	12	0	0	0	0	logfile
✔	8P4C	17405	2024-04-17	2023-05-20	3.8	4.28	2.98	3.0	0.005	0.84	2.0	0.05	15.21	0.01	0.317	21.26	0.43	5.1	94.8	0.1	-1.21	0.80	0.66	1.13	3.1	0.003	0.69	0.0	0.04	16.36	0.00	2.050	14.85	1.58	5.3	94.7	0.0	-0.16	2.36	0.88	0.85	1.79	41439	4953	20	90	4	0	0	logfile
✔	8P4B	17404	2024-04-15	2023-05-20	3.2	3.70	3.17	3.5	0.003	0.70	0.0	0.05	15.03	0.00	1.698	14.92	0.03	5.2	94.8	0.0	-0.88	0.85	0.84	2.62	3.5	0.003	0.66	0.0	0.04	16.89	0.00	2.041	14.91	1.37	5.2	94.8	0.0	-0.18	1.17	0.84	0.85	2.23	35383	4219	22	81	9	0	0	logfile
✔	8P4F	17408	2024-04-17	2023-05-20	4.0	4.70	3.43	3.1	0.015	1.30	3.0	0.11	13.41	0.01	1.370	12.69	1.05	4.2	95.5	0.3	-2.88	0.85	0.73	—	3.1	0.004	0.73	0.0	0.04	14.80	0.00	2.020	15.97	0.78	4.4	95.5	0.1	0.51	2.26	0.90	0.85	—	43686	5208	26	105	11	0	0	logfile
✔	8P4A	17403	2024-04-16	2023-05-20	3.6	4.57	3.57	3.7	0.005	0.84	16.0	0.09	15.47	0.01	1.959	14.95	3.72	4.6	95.2	0.2	-0.87	0.90	0.84	1.75	3.7	0.005	0.69	0.0	0.04	15.62	0.00	1.990	16.72	2.03	5.4	94.6	0.0	0.11	0.57	0.91	0.86	1.62	36673	4372	22	86	9	0	0	logfile
✔	8P4E	17407	2024-04-16	2023-05-20	3.9	4.69	3.61	3.0	0.013	1.28	5.0	0.10	14.49	0.01	0.354	12.57	1.72	5.5	94.4	0.1	-2.95	0.74	0.62	1.42	3.0	0.004	0.75	0.0	0.04	15.18	0.00	1.680	16.34	1.08	4.7	95.3	0.0	0.21	1.66	0.87	0.85	1.51	41213	4941	24	81	10	0	0	logfile
✔	8JG9	36225	2024-04-12	2023-05-20	3.82	4.64	3.86	3.7	0.008	1.27	5.0	0.09	19.26	0.01	2.265	11.46	1.19	2.9	97.1	0.0	0.03	0.78	0.48	0.52	3.7	0.006	0.82	0.0	0.04	20.23	0.01	2.038	34.41	2.00	7.0	93.0	0.0	-0.83	2.17	0.86	0.69	0.72	24264	2424	8	222	0	0	0	logfile
✔	8SX7	40826	2024-04-10	2023-05-20	2.7	3.18	2.98	3.2	0.026	1.09	0.0	0.14	12.64	0.01	2.180	2.39	0.39	2.5	97.5	0.0	-1.48	0.54	0.65	1.29	3.2	0.004	0.73	0.0	0.04	15.07	0.01	2.051	10.61	1.84	2.2	97.8	0.0	-0.78	0.77	0.53	0.68	1.19	19237	1188	2	0	1	3	9719	logfile
✔	8JGF	36232	2024-04-06	2023-05-20	2.7	2.39	2.58	3.0	0.008	0.86	1.0	0.05	15.55	0.00	2.221	9.14	0.58	4.3	95.7	0.0	0.21	0.81	0.78	3.15	3.0	0.003	0.65	0.0	0.04	16.98	0.00	2.172	10.31	3.48	2.9	97.1	0.0	1.35	1.63	0.80	0.82	3.14	8338	1101	6	0	0	0	0	logfile
✔	8JGB	36229	2024-04-06	2023-05-20	2.84	2.28	2.92	2.0	0.010	1.22	2.0	0.07	15.63	0.01	2.230	7.27	2.89	6.4	93.6	0.0	-2.42	0.83	0.82	3.66	2.0	0.003	0.67	0.0	0.04	16.60	0.00	2.253	5.49	3.02	4.1	95.9	0.0	-0.15	0.53	0.83	0.83	3.70	7796	1062	6	0	0	0	0	logfile
✔	8SX8	40827	2024-04-10	2023-05-20	3.5	3.82	3.45	3.7	0.005	0.84	0.0	0.06	12.22	0.01	2.132	0.95	0.10	2.0	98.0	0.0	-1.93	0.62	0.79	2.30	3.7	0.003	0.52	0.0	0.04	14.25	0.00	1.954	5.78	0.98	1.8	98.2	0.0	1.19	1.15	0.63	0.79	1.60	19025	1175	2	0	1	1	9610	logfile

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