Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SX7	40826	2024-04-10	2023-05-20	2.7	3.18	2.98	3.2	0.026	1.09	0.0	0.14	12.64	0.01	2.180	2.39	0.39	2.5	97.5	0.0	-1.48	0.54	0.65	1.29	3.2	0.004	0.73	0.0	0.04	15.07	0.01	2.051	10.61	1.84	2.2	97.8	0.0	-0.78	0.77	0.53	0.68	1.19	19237	1188	2	0	1	3	9719	logfile
✔	8JG9	36225	2024-04-12	2023-05-20	3.82	4.64	3.86	3.7	0.008	1.27	5.0	0.09	19.26	0.01	2.265	11.46	1.19	2.9	97.1	0.0	0.03	0.78	0.48	0.52	3.7	0.006	0.82	0.0	0.04	20.23	0.01	2.038	34.41	2.00	7.0	93.0	0.0	-0.83	2.17	0.86	0.69	0.72	24264	2424	8	222	0	0	0	logfile
✔	8P49	17402	2024-04-10	2023-05-19	2.79	3.50	2.98	3.4	0.002	0.44	0.0	0.04	11.69	0.00	2.233	3.77	0.95	1.8	98.2	0.0	1.58	0.78	0.85	2.78	3.4	0.002	0.56	0.0	0.04	13.94	0.00	2.198	5.76	1.10	1.8	98.2	0.0	1.58	0.93	0.76	0.82	2.59	17914	2192	6	0	0	0	0	logfile
✔	8SWN	40821	2024-04-10	2023-05-19	3.1	3.32	3.08	3.3	0.020	1.67	85.0	0.20	13.42	0.01	1.789	0.38	0.00	1.2	98.8	0.0	-0.67	0.67	0.86	4.37	3.3	0.004	0.53	0.0	0.04	15.21	0.00	1.775	3.02	1.32	1.7	98.3	0.0	1.57	2.21	0.66	0.86	2.66	18422	1135	2	0	5	0	9269	logfile
✔	8JFZ	36220	2024-04-11	2023-05-19	3.5	3.45	3.49	3.6	0.011	1.55	0.0	0.07	18.97	0.01	2.092	18.66	7.50	5.9	94.0	0.2	-1.79	0.71	0.78	1.41	3.5	0.003	0.63	0.0	0.04	16.25	0.00	2.009	8.17	2.18	2.9	97.1	0.0	0.91	1.34	0.73	0.82	1.63	22340	2642	22	0	70	6	0	logfile
✔	8P3U	17395	2024-04-09	2023-05-18	3.77	4.35	3.68	3.9	0.012	1.43	10.0	0.10	15.17	0.01	2.166	13.39	3.81	2.5	96.9	0.6	0.03	0.60	0.66	1.33	3.9	0.003	0.69	0.0	0.04	15.52	0.00	2.136	14.65	2.38	1.5	98.3	0.2	1.66	0.77	0.63	0.74	0.78	16888	2241	8	0	0	0	0	logfile
✔	8P3Z	17400	2024-04-09	2023-05-18	3.46	3.90	3.32	3.6	0.013	1.65	2.0	0.11	14.12	0.02	2.217	8.69	1.02	4.4	95.3	0.4	-1.65	0.56	0.57	0.42	3.6	0.006	0.75	0.0	0.04	15.40	0.00	2.056	13.87	2.71	3.2	96.8	0.0	1.67	1.83	0.66	0.82	1.59	16974	2284	8	0	0	0	0	logfile
✔	8P3o	17387	2024-04-11	2023-05-18	2.9	4.09	2.95	3.3	0.003	0.72	0.0	0.04	17.21	0.00	2.204	7.12	0.41	3.9	96.1	0.0	1.02	0.78	0.89	2.31	3.3	0.003	0.68	0.0	0.04	17.21	0.00	2.216	7.15	1.05	4.0	96.0	0.0	3.01	0.52	0.78	0.88	2.04	21192	2656	8	0	0	0	0	logfile
✔	8P3X	17398	2024-04-09	2023-05-18	3.36	3.85	3.33	3.6	0.013	1.66	2.0	0.11	14.28	0.01	2.232	7.73	1.68	4.4	95.4	0.2	-1.65	0.62	0.66	1.61	3.6	0.004	0.85	1.0	0.04	14.97	0.00	2.092	12.11	2.93	2.7	97.3	0.0	2.08	1.66	0.67	0.83	1.72	17035	2293	8	0	0	0	0	logfile
✔	8P3P	17389	2024-04-11	2023-05-18	2.5	3.25	2.58	3.0	0.003	0.63	0.0	0.03	16.19	0.00	2.267	5.98	0.86	4.1	95.9	0.0	3.26	0.76	0.89	2.76	3.0	0.003	0.64	0.0	0.03	16.50	0.00	2.331	5.68	1.40	3.6	96.4	0.0	3.90	0.21	0.73	0.86	2.54	21224	2656	8	0	0	0	0	logfile
✔	8JFL	36213	2024-04-08	2023-05-18	2.9	2.17	3.05	1.9	0.014	1.87	213.0	0.13	16.11	0.01	1.101	28.45	3.87	3.9	96.1	0.0	-0.63	0.68	0.66	1.90	1.9	0.004	0.71	0.0	0.04	17.79	0.01	2.053	14.55	3.16	3.2	96.8	0.0	0.20	0.71	0.75	0.79	2.38	65884	8204	20	0	12	0	0	logfile
✔	8P3Q	17392	2024-04-10	2023-05-18	2.95	3.72	3.13	3.5	0.010	1.37	2.0	0.08	18.61	0.01	2.310	13.78	9.79	5.9	93.2	1.0	-1.51	0.69	0.84	2.07	3.5	0.003	0.72	0.0	0.04	16.82	0.00	2.104	12.62	2.42	3.6	96.2	0.2	1.56	1.69	0.63	0.79	2.00	18047	2299	19	0	16	7	0	logfile
✔	8P3W	17397	2024-04-09	2023-05-18	3.53	3.95	3.35	3.6	0.012	1.63	19.0	0.13	15.87	0.02	1.988	8.93	3.17	3.0	96.9	0.1	-0.44	0.65	0.75	2.71	3.6	0.005	0.68	0.0	0.04	15.86	0.00	2.106	13.88	2.76	2.0	98.0	0.0	1.28	0.86	0.67	0.81	2.17	17485	2251	24	0	14	33	0	logfile
✔	8P3V	17396	2024-04-09	2023-05-18	3.53	3.91	3.30	3.6	0.011	1.33	3.0	0.10	15.53	0.01	2.259	11.55	5.25	2.9	96.6	0.6	0.15	0.62	0.70	2.12	3.6	0.006	0.68	0.0	0.04	15.50	0.00	2.178	13.17	3.28	1.9	98.1	0.0	2.23	0.67	0.68	0.83	2.19	16914	2247	8	0	0	0	0	logfile
✔	8P3T	17394	2024-04-09	2023-05-18	3.39	3.89	3.20	3.5	0.012	1.40	7.0	0.10	15.56	0.01	2.226	11.91	4.78	2.5	97.1	0.4	-0.20	0.62	0.72	2.31	3.5	0.006	0.67	0.0	0.04	15.70	0.00	2.103	12.27	3.17	1.8	98.2	0.0	2.14	0.74	0.67	0.84	2.18	16861	2237	8	0	0	0	0	logfile
✔	8JFK	36212	2024-04-12	2023-05-18	2.9	2.21	3.14	1.4	0.007	1.25	18.0	0.06	17.18	0.01	1.745	22.22	2.29	2.5	97.5	0.0	-0.34	0.68	0.69	1.41	1.3	0.005	0.85	0.0	0.05	17.84	0.01	2.077	20.90	4.32	3.4	96.6	0.0	-0.25	1.22	0.70	0.71	1.47	81428	10140	24	0	8	0	0	logfile
✔	8P3Y	17399	2024-04-09	2023-05-18	3.55	3.90	3.43	3.6	0.013	1.69	1.0	0.12	14.45	0.01	2.163	11.07	2.22	4.4	95.0	0.5	-1.70	0.61	0.66	1.59	3.6	0.004	0.70	0.0	0.04	15.04	0.00	2.155	13.02	2.52	2.9	97.0	0.1	1.65	0.87	0.67	0.82	1.62	17012	2291	8	0	0	0	0	logfile
✔	8P3S	17393	2024-04-10	2023-05-18	2.95	3.61	3.08	3.4	0.012	1.46	5.0	0.11	15.80	0.01	2.216	4.98	1.80	4.3	95.2	0.5	-0.32	0.53	0.50	2.45	3.4	0.003	0.71	0.0	0.04	15.53	0.00	2.148	9.99	1.37	2.7	97.1	0.2	1.83	0.86	0.64	0.81	2.19	18195	2316	21	0	16	7	0	logfile
✔	8SWF	40811	2024-04-05	2023-05-18	3.39	3.71	3.54	3.6	0.012	1.17	1.0	0.07	10.73	0.00	2.263	1.39	0.00	3.7	95.6	0.7	-0.95	0.75	0.78	2.43	3.6	0.003	0.70	0.0	0.04	14.37	0.00	2.131	11.29	1.29	7.5	92.5	0.0	-0.57	1.39	0.74	0.79	2.21	53244	6676	8	0	0	0	0	logfile
✔	8JFT	36217	2024-04-07	2023-05-18	3.31	4.08	3.58	3.9	0.008	1.27	2.0	0.09	18.18	0.01	2.264	11.41	0.90	2.9	97.1	0.0	0.00	0.70	0.72	2.30	3.9	0.002	0.57	0.0	0.04	18.77	0.00	2.206	9.43	1.89	2.5	97.5	0.0	0.80	1.21	0.66	0.69	2.04	11176	1151	3	86	0	0	0	logfile

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