Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SW7	40810	2024-04-09	2023-05-17	3.37	3.85	3.96	3.9	0.022	1.72	0.0	0.13	11.37	0.01	2.188	1.14	0.14	2.2	97.8	0.1	0.77	0.58	0.77	2.95	3.8	0.003	0.66	0.0	0.04	14.61	0.00	2.196	9.29	2.91	3.1	96.9	0.0	-0.43	1.31	0.51	0.78	2.01	15133	1664	17	0	289	0	0	logfile
✔	8P34	17383	2024-04-05	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.003	0.53	0.0	0.05	13.66	0.00	2.674	0.69	1.23	4.3	95.7	0.0	-1.62	0.28	0.28	0.88	6.38	711	94	1	0	0	0	0	logfile
✔	8P39	17385	2024-04-07	2023-05-17	2.58	2.12	2.56	1.5	0.007	0.63	0.0	0.04	12.57	0.00	1.951	9.53	5.43	5.6	94.1	0.3	-1.34	0.71	0.64	3.31	1.5	0.004	0.70	0.0	0.05	15.19	0.00	1.917	12.83	3.88	7.5	92.3	0.3	-1.19	1.00	0.71	0.65	2.69	9705	1200	4	0	6	0	0	logfile
✔	8P36	17384	2024-04-05	2023-05-17	2.51	3.15	2.51	3.0	0.005	0.63	0.0	0.04	18.62	0.00	2.195	6.55	5.51	2.5	97.5	0.0	1.15	0.34	0.90	2.74	3.0	0.003	0.51	0.0	0.04	18.38	0.00	2.426	5.32	2.36	3.1	96.9	0.0	0.97	0.43	0.30	0.88	3.27	1223	161	2	0	2	0	0	logfile
✔	8SVF	40789	2024-04-09	2023-05-16	3.2	4.13	3.32	3.5	0.003	0.53	0.0	0.03	24.96	0.00	2.220	6.36	1.28	1.6	98.4	0.0	2.82	0.85	0.83	1.74	3.5	0.003	0.58	0.0	0.03	26.09	0.00	2.197	8.62	1.93	2.5	97.5	0.0	2.69	0.63	0.86	0.85	1.21	15254	1189	13	295	0	0	0	logfile
✔	8JET	36195	2024-04-10	2023-05-16	3.1	2.32	3.02	3.2	0.002	0.43	0.0	0.04	9.65	0.00	2.269	3.61	1.54	5.4	94.6	0.0	-0.08	0.69	0.80	1.95	3.2	0.003	0.58	0.0	0.04	12.68	0.00	2.152	8.03	1.54	6.0	93.9	0.1	1.50	1.54	0.70	0.81	1.52	19526	2612	4	0	0	0	0	logfile
✔	8JEU	36196	2024-04-10	2023-05-16	3.5	4.02	3.58	3.9	0.002	0.52	0.0	0.04	15.90	0.00	2.202	6.95	0.17	5.0	94.7	0.3	-0.27	0.71	0.81	2.03	3.9	0.002	0.57	0.0	0.04	15.98	0.00	2.152	8.17	1.88	4.8	94.9	0.2	1.14	0.41	0.71	0.80	1.42	19438	2640	4	0	0	0	0	logfile
✔	8JEJ	36190	2024-04-06	2023-05-16	2.5	2.72	2.51	2.8	0.030	1.34	0.0	0.49	18.65	0.01	2.165	7.23	2.60	4.3	95.7	0.0	0.11	0.69	0.88	5.00	2.8	0.003	1.08	0.0	0.06	17.79	0.01	1.809	6.52	1.92	3.9	96.1	0.0	0.65	0.18	0.69	0.88	4.83	8604	1089	5	0	6	0	0	logfile
✔	8P2L	17369	2024-04-16	2023-05-16	2.68	3.61	2.85	3.3	0.010	1.60	47.0	0.11	13.68	0.01	2.486	1.07	0.56	2.8	97.2	0.0	-1.64	0.78	0.67	2.92	3.3	0.004	0.79	0.0	0.04	15.28	0.00	2.063	13.13	1.09	3.9	96.1	0.0	0.82	0.79	0.82	0.86	1.89	40776	5152	24	0	8	0	0	logfile
✔	8JEK	36191	2024-04-06	2023-05-16	2.7	2.98	2.75	3.0	0.031	1.34	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.004	1.07	0.0	0.06	16.84	0.01	1.805	7.38	3.16	5.0	95.0	0.0	0.31	0.19	0.65	0.86	4.44	8623	1089	5	0	6	0	0	logfile
✔	8JER	36193	2024-04-06	2023-05-16	3.45	3.82	3.55	3.8	0.004	0.62	0.0	0.04	12.99	0.00	2.211	5.98	0.14	3.1	96.9	0.0	0.23	0.70	0.78	2.92	3.8	0.004	0.59	0.0	0.04	15.04	0.00	2.102	7.66	4.23	3.6	96.3	0.1	0.10	0.47	0.69	0.81	2.40	7907	1119	6	0	1	0	0	logfile
✔	8SV8	40782	2024-04-07	2023-05-15	3.38	3.59	—	3.5	0.004	0.72	0.0	0.04	16.38	0.01	2.199	10.96	0.54	5.5	94.4	0.1	-0.43	0.82	0.85	1.72	3.5	0.002	0.57	0.0	0.04	16.91	0.00	2.149	10.03	2.36	4.7	95.2	0.1	0.36	0.94	0.84	0.88	1.46	10208	1299	5	0	1	0	0	logfile
✔	8JE2	36183	2024-04-08	2023-05-15	3.63	4.61	3.88	3.9	0.004	0.71	1.0	0.05	12.66	0.00	2.215	13.17	0.39	2.8	97.2	0.1	1.29	0.82	0.79	1.08	3.9	0.003	0.69	0.0	0.04	14.36	0.00	2.029	14.63	0.58	3.4	96.5	0.1	1.57	0.97	0.82	0.82	1.31	9271	1147	6	0	1	0	0	logfile
✔	8JE1	36182	2024-04-12	2023-05-15	3.95	5.03	3.95	3.9	0.005	0.90	0.0	0.05	15.83	0.01	2.228	17.27	0.88	5.3	94.5	0.1	-1.50	0.83	0.75	0.70	3.9	0.004	0.73	0.0	0.04	16.47	0.00	2.101	16.73	3.26	5.9	94.0	0.1	-0.27	0.67	0.85	0.83	0.48	17507	2165	10	0	1	0	0	logfile
✔	8JEC	36185	2024-04-10	2023-05-15	3.1	3.61	3.15	3.5	0.002	0.40	0.0	0.04	9.75	0.00	2.196	4.85	1.03	4.1	95.8	0.1	0.28	0.70	0.82	2.48	3.5	0.003	0.58	0.0	0.04	12.63	0.00	2.214	7.46	1.42	4.6	95.3	0.1	1.78	0.47	0.72	0.84	1.67	19680	2632	4	0	0	0	0	logfile
✔	8P27	17358	2024-04-06	2023-05-15	2.73	2.25	2.73	2.1	0.004	0.55	0.0	0.04	12.49	0.00	1.936	6.22	5.43	8.3	91.7	0.0	-2.06	0.79	0.77	3.73	2.1	0.004	0.63	0.0	0.05	16.46	0.00	1.872	8.40	5.74	8.0	92.0	0.0	-1.64	0.47	0.81	0.79	3.03	8810	1089	4	0	4	0	0	logfile
✔	8P28	17359	2024-04-11	2023-05-15	2.77	2.35	2.80	2.1	0.005	0.64	0.0	0.05	13.73	0.00	1.795	6.79	2.15	10.0	89.8	0.2	-1.36	0.78	0.77	3.56	2.1	0.004	0.68	0.0	0.04	15.95	0.00	1.895	8.32	3.45	7.2	92.8	0.0	-0.73	0.42	0.80	0.80	2.74	21141	2584	8	0	16	0	0	logfile
✔	8P2C	17360	2024-04-11	2023-05-15	2.59	2.23	2.67	2.0	0.003	0.49	0.0	0.04	13.17	0.00	1.935	5.71	2.68	6.8	93.0	0.1	-0.71	0.81	0.80	3.52	2.0	0.003	0.59	0.0	0.04	16.48	0.00	1.989	7.50	1.79	6.1	93.8	0.0	-0.30	0.57	0.82	0.81	2.95	21173	2588	8	0	16	0	0	logfile
✔	8P2D	17361	2024-04-06	2023-05-15	2.59	2.21	2.59	2.0	0.002	0.51	0.0	0.04	12.79	0.00	1.968	10.26	4.79	8.1	91.9	0.0	-1.58	0.71	0.64	2.46	2.0	0.003	0.67	0.0	0.04	16.03	0.00	2.060	13.60	2.45	6.9	93.1	0.0	-1.11	1.31	0.73	0.67	1.67	8793	1087	4	0	4	0	0	logfile
✔	8P23	17357	2024-04-07	2023-05-14	3.17	2.45	3.19	2.2	0.004	0.69	2.0	0.05	13.20	0.01	2.090	5.91	4.71	5.8	93.7	0.5	-0.94	0.75	0.75	3.06	2.2	0.004	0.68	0.0	0.04	15.34	0.00	2.084	7.65	3.22	7.0	92.7	0.4	-0.58	0.55	0.78	0.79	2.53	11399	1401	4	0	6	0	0	logfile

• ← previous
• Page 57 of 610
• next →