Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V89	43031	2024-04-15	2023-12-05	2.53	2.23	2.64	2.3	0.008	0.98	0.0	0.06	15.42	0.01	2.287	4.68	0.56	4.1	95.9	0.0	-1.75	0.63	0.80	5.26	2.3	0.004	0.61	0.0	0.04	15.68	0.00	1.974	7.50	1.73	1.6	98.4	0.0	1.14	0.46	0.65	0.83	5.08	32725	1970	25	0	40	70	15855	logfile
✔	8V8D	43035	2024-04-14	2023-12-05	3.31	2.50	3.43	3.4	0.012	1.07	0.0	0.06	13.25	0.01	2.196	4.47	0.12	3.4	96.6	0.0	-1.57	0.66	0.72	3.33	3.3	0.003	0.55	0.0	0.04	14.04	0.00	2.057	7.36	0.82	3.3	96.7	0.0	0.26	0.69	0.70	0.77	3.02	30774	1886	15	0	33	0	15085	logfile
✔	8V82	43015	2024-04-15	2023-12-04	2.61	2.68	2.57	2.7	0.012	1.10	0.0	0.06	19.23	0.01	2.199	2.18	0.00	3.1	96.9	0.0	-1.47	0.67	0.79	4.20	2.7	0.003	0.55	0.0	0.04	15.26	0.00	1.995	8.87	0.62	2.3	97.7	0.0	0.16	1.18	0.69	0.81	4.37	33265	1970	25	0	65	45	15825	logfile
✔	8V86	43025	2024-04-15	2023-12-04	2.47	2.51	2.39	2.5	0.031	0.95	0.0	0.06	18.45	0.01	2.384	4.87	0.00	3.6	96.4	0.0	-1.05	0.67	0.81	4.37	2.5	0.003	0.64	0.0	0.04	17.80	0.00	2.120	5.63	0.95	1.9	98.1	0.0	0.72	0.34	0.72	0.85	4.25	33020	1970	25	0	50	65	15835	logfile
✔	8V80	43012	2024-04-15	2023-12-04	2.34	2.34	2.25	2.3	0.014	1.16	0.0	0.07	17.79	0.01	2.331	3.29	0.00	2.8	97.2	0.0	-1.28	0.69	0.79	5.40	2.3	0.003	0.60	0.0	0.04	14.54	0.00	2.127	6.92	0.62	1.7	98.3	0.0	0.73	1.59	0.69	0.80	5.19	33080	1970	25	0	60	55	15835	logfile
✔	8RB5	19026	2024-04-06	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.002	0.55	0.0	0.03	17.49	0.00	2.233	8.44	1.71	2.4	97.6	0.0	2.04	1.43	0.30	0.80	2.10	8772	540	3	0	0	0	4422	logfile
✔	8RB7	19027	2024-04-05	2023-12-03	3.2	3.80	3.05	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.56	0.0	0.03	17.84	0.01	2.007	8.72	0.96	2.5	97.5	0.0	2.16	2.08	0.28	0.76	1.47	5848	360	2	0	0	0	2948	logfile
✔	8RB4	19025	2024-04-08	2023-12-02	3.2	3.79	3.35	3.7	0.014	1.83	0.0	0.10	14.38	0.02	2.509	0.68	0.51	3.4	96.6	0.0	-1.19	0.47	0.73	1.91	3.7	0.004	0.63	0.0	0.04	17.49	0.00	1.923	12.45	2.95	2.5	97.3	0.2	1.21	2.24	0.49	0.79	1.49	14620	900	5	0	0	0	7370	logfile
✔	8RAS	19023	2024-04-06	2023-12-01	2.62	2.31	—	1.7	0.003	0.51	0.0	0.04	17.48	0.00	1.980	7.95	0.93	3.1	96.9	0.1	0.61	0.78	0.80	3.20	1.5	0.005	0.63	0.0	0.05	18.06	0.00	1.908	9.19	2.11	3.7	96.2	0.0	0.45	0.44	0.81	0.88	3.68	57315	6830	45	81	4	254	0	logfile
✔	8R8D	18999	2024-04-06	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.67	0.0	0.05	14.75	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.005	0.73	0.0	0.05	15.12	0.01	2.151	9.07	3.03	5.1	94.9	0.0	0.15	0.31	0.68	0.82	3.22	7062	920	14	0	12	18	0	logfile
✔	8V4Y	42977	2024-04-13	2023-11-29	2.8	3.26	2.84	3.0	0.011	1.33	0.0	0.08	20.03	0.01	1.852	1.67	0.67	3.7	96.2	0.2	-1.09	0.81	0.68	4.37	3.0	0.004	0.62	0.0	0.04	24.13	0.00	1.858	3.09	0.95	4.2	95.7	0.2	1.52	2.11	0.90	0.88	3.39	29426	1219	12	294	3	0	13550	logfile
✔	8X82	38133	2024-04-08	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.40	0.0	0.03	16.97	0.00	2.209	5.36	1.45	1.3	98.7	0.0	3.58	0.37	0.62	0.82	2.78	12004	1520	4	0	0	0	0	logfile
✔	8X83	38134	2024-04-12	2023-11-27	2.8	2.86	2.94	3.0	0.005	0.60	0.0	0.03	14.83	0.00	1.974	4.85	1.22	1.3	98.7	0.0	2.34	0.59	0.79	2.50	3.0	0.003	0.43	0.0	0.03	15.41	0.00	2.033	5.26	0.99	0.9	99.1	0.0	3.42	0.50	0.58	0.79	2.76	24482	1520	12	0	6	4	12424	logfile
✔	8X84	38135	2024-04-12	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.002	0.41	0.0	0.03	15.07	0.00	2.042	3.38	0.38	0.3	99.7	0.0	3.56	0.49	0.60	0.80	2.63	24534	1524	12	0	6	4	12444	logfile
✔	8X7T	38109	2024-04-13	2023-11-25	3.26	2.44	—	3.2	0.002	0.63	0.0	0.04	10.71	0.00	2.206	16.31	0.38	3.2	96.7	0.1	-3.29	0.78	0.69	1.97	3.2	0.003	0.58	0.0	0.04	14.23	0.00	2.175	11.18	1.60	2.9	97.0	0.1	-0.29	0.64	0.82	0.75	1.85	28329	3753	6	0	0	0	0	logfile
✔	8X7U	38111	2024-04-13	2023-11-25	3.57	3.00	—	3.5	0.003	0.66	0.0	0.04	11.87	0.00	2.050	11.43	0.31	2.5	97.4	0.1	-3.75	0.80	0.74	1.42	3.5	0.003	0.59	0.0	0.04	14.39	0.00	1.968	10.88	2.23	3.1	96.8	0.1	-0.62	1.16	0.81	0.75	1.61	28832	3840	11	0	8	0	0	logfile
✔	8X7A	38096	2024-04-09	2023-11-23	2.56	3.58	2.64	3.3	0.020	0.95	2.0	0.04	8.98	0.01	2.199	4.74	0.12	2.1	97.9	0.0	-0.63	0.67	0.71	2.35	3.3	0.003	0.62	0.0	0.04	14.43	0.00	2.034	8.70	1.36	3.8	96.2	0.0	1.46	1.22	0.65	0.79	2.79	15628	1044	6	0	1	0	7679	logfile
✔	8X79	38095	2024-04-09	2023-11-23	2.41	1.62	2.61	3.0	0.003	0.56	2.0	0.04	14.62	0.00	2.218	3.41	1.30	1.6	98.4	0.0	-0.03	0.62	0.80	3.50	2.9	0.004	0.58	0.0	0.04	17.18	0.00	2.019	6.44	2.71	2.6	97.4	0.0	1.29	2.53	0.61	0.84	3.70	16148	1055	6	0	1	0	7994	logfile
✔	8X63	38078	2024-04-05	2023-11-20	3.2	4.09	3.72	4.5	0.005	0.74	1.0	0.05	15.26	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.004	0.74	0.0	0.04	17.26	0.01	2.293	9.87	2.85	7.6	92.4	0.0	-0.32	1.25	0.29	0.45	0.26	2252	270	2	0	1	0	0	logfile
✔	8X64	38079	2024-04-05	2023-11-20	3.4	4.16	3.79	4.1	0.005	0.90	1.0	0.05	17.36	0.01	2.290	13.75	0.42	7.5	92.5	0.0	-0.76	0.45	0.61	2.20	4.1	0.005	0.84	0.0	0.04	18.19	0.01	2.112	13.30	5.44	8.6	91.4	0.0	-1.11	1.15	0.41	0.61	1.33	2189	263	2	0	1	0	0	logfile

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