Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X5X	38074	2024-04-05	2023-11-20	3.5	3.67	4.06	3.8	0.004	0.77	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.76	0.0	0.04	17.57	0.00	2.257	12.40	4.31	4.9	95.1	0.0	1.16	0.80	0.44	0.57	0.33	2105	256	1	0	0	0	0	logfile
✔	8X64	38079	2024-04-05	2023-11-20	3.4	4.16	3.79	4.1	0.005	0.90	1.0	0.05	17.36	0.01	2.290	13.75	0.42	7.5	92.5	0.0	-0.76	0.45	0.61	2.20	4.1	0.005	0.84	0.0	0.04	18.19	0.01	2.112	13.30	5.44	8.6	91.4	0.0	-1.11	1.15	0.41	0.61	1.33	2189	263	2	0	1	0	0	logfile
✔	8X63	38078	2024-04-05	2023-11-20	3.2	4.09	3.72	4.5	0.005	0.74	1.0	0.05	15.26	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.004	0.74	0.0	0.04	17.26	0.01	2.293	9.87	2.85	7.6	92.4	0.0	-0.32	1.25	0.29	0.45	0.26	2252	270	2	0	1	0	0	logfile
✔	8X5i	38070	2024-04-09	2023-11-17	3.01	3.31	3.19	3.2	0.007	1.05	0.0	0.06	15.26	0.01	2.113	3.05	0.64	4.8	95.2	0.0	-3.57	0.69	0.85	3.46	3.2	0.005	0.62	0.0	0.04	16.21	0.00	2.007	5.75	2.22	4.7	95.3	0.0	-0.02	0.52	0.71	0.87	3.45	17006	2063	8	0	8	0	0	logfile
✔	8X5D	38066	2024-04-10	2023-11-17	3.1	3.23	3.05	3.2	0.004	0.65	0.0	0.04	15.44	0.01	2.263	3.62	5.46	4.0	96.0	0.0	-5.02	0.78	0.87	3.03	3.2	0.002	0.57	0.0	0.04	16.48	0.00	2.075	6.63	3.54	4.1	95.9	0.0	-0.88	0.48	0.80	0.89	1.99	18477	2225	13	47	0	0	0	logfile
✔	8R5o	18935	2024-04-05	2023-11-17	2.49	2.13	—	1.4	0.002	0.45	0.0	0.04	11.77	0.00	2.042	4.11	0.44	2.7	97.2	0.0	0.35	0.83	0.86	5.83	1.4	0.005	0.60	0.0	0.05	15.23	0.01	1.988	5.46	1.32	3.2	96.8	0.0	0.79	0.68	0.84	0.87	5.50	54473	6680	41	0	3	255	0	logfile
✔	8R5H	18915	2024-04-07	2023-11-16	3.44	2.38	3.38	2.2	0.007	0.77	0.0	0.04	14.29	0.01	1.705	6.78	0.00	8.4	91.6	0.0	-0.55	0.74	0.71	2.34	2.2	0.003	0.63	0.0	0.04	16.22	0.00	2.203	7.56	2.18	8.1	91.9	0.0	-0.17	0.34	0.76	0.74	1.94	11277	1437	11	0	21	0	0	logfile
✔	8R55	18901	2024-04-16	2023-11-16	3.57	3.93	3.88	3.8	0.006	1.01	9.0	0.05	24.53	0.01	1.933	10.81	1.40	6.9	92.9	0.2	-2.49	0.70	0.81	0.58	3.7	0.004	0.70	0.0	0.04	24.15	0.00	2.025	18.42	7.99	8.3	91.6	0.1	-2.00	0.52	0.72	0.83	0.57	143867	5438	53	4715	0	0	0	logfile
✔	8X51	38058	2024-04-06	2023-11-16	2.92	3.16	2.94	3.2	0.008	1.27	0.0	0.07	18.47	0.01	2.328	1.89	0.00	7.3	92.3	0.3	-3.65	0.56	0.76	3.45	3.2	0.003	0.68	0.0	0.04	20.66	0.00	2.178	6.73	2.58	6.5	93.1	0.3	-0.69	1.56	0.61	0.79	2.83	8095	885	6	42	2	0	0	logfile
✔	8R57	18903	2024-04-12	2023-11-16	2.55	2.73	2.64	2.7	0.009	0.99	0.0	0.05	21.81	0.03	1.799	17.27	1.11	7.2	92.8	0.0	-1.66	0.79	0.81	2.29	2.7	0.003	0.78	0.0	0.04	21.70	0.01	1.858	12.63	2.59	5.1	94.9	0.0	-0.44	2.62	0.82	0.84	2.40	25048	1878	29	458	28	357	0	logfile
✔	8UYo	42812	2024-04-13	2023-11-13	3.3	2.91	3.29	3.3	0.012	1.63	0.0	0.07	14.38	0.02	2.319	0.00	0.62	2.8	97.2	0.0	-3.30	0.58	0.58	0.15	2.9	0.003	0.65	0.0	0.04	17.92	0.00	2.138	6.96	2.20	1.7	98.3	0.0	0.75	1.25	0.68	0.75	1.03	89580	10980	60	0	0	0	0	logfile
✔	8UYH	42806	2024-04-05	2023-11-13	2.84	2.98	2.94	3.1	0.006	0.76	0.0	0.04	13.96	0.01	2.074	3.66	1.52	1.1	98.9	0.0	-1.53	0.55	0.80	3.13	3.1	0.002	0.48	0.0	0.04	15.22	0.00	1.967	6.65	2.27	2.0	98.0	0.0	1.54	0.54	0.60	0.83	2.80	6036	745	4	0	5	0	0	logfile
✔	8UYF	42804	2024-04-06	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.002	0.56	0.0	0.04	13.69	0.00	2.190	6.27	1.39	1.7	98.3	0.0	1.55	1.27	0.75	0.87	3.89	6460	801	2	0	0	0	0	logfile
✔	8UYi	42807	2024-04-05	2023-11-13	3.13	3.34	3.23	3.4	0.004	0.67	0.0	0.04	12.68	0.00	2.057	4.03	1.08	2.1	97.9	0.0	-0.84	0.52	0.74	3.12	3.4	0.003	0.61	0.0	0.04	15.34	0.00	1.939	9.32	3.85	2.7	97.3	0.0	1.25	1.90	0.66	0.82	2.58	5980	738	4	0	6	0	0	logfile
✔	8UXX	42788	2024-04-11	2023-11-11	3.2	3.48	3.27	3.5	0.012	1.91	8.0	0.10	15.07	0.02	1.821	0.17	2.29	4.4	95.5	0.1	-2.07	0.64	0.74	3.38	3.5	0.004	0.70	1.0	0.04	15.81	0.00	0.884	6.44	1.67	3.4	96.6	0.0	-0.42	2.06	0.72	0.84	2.59	77330	4916	26	0	27	5	38268	logfile
✔	8UXW	42787	2024-04-11	2023-11-11	2.7	2.92	2.78	3.0	0.013	1.92	15.0	0.10	15.35	0.02	1.860	0.28	2.69	3.0	97.0	0.0	-1.20	0.48	0.72	4.73	3.0	0.003	0.59	0.0	0.04	16.64	0.00	1.840	4.54	1.76	2.1	97.9	0.0	0.54	0.88	0.65	0.86	3.90	77287	4916	25	0	20	0	38258	logfile
✔	8R3T	18874	2024-04-05	2023-11-10	3.1	3.18	2.95	3.4	0.011	2.12	6.0	0.11	14.98	0.01	2.582	0.55	5.45	2.0	96.2	1.8	-1.86	0.37	0.73	5.38	3.4	0.003	0.66	0.0	0.05	13.95	0.00	2.167	4.24	1.92	5.6	94.2	0.3	-2.72	1.76	0.39	0.76	4.96	5438	354	6	0	0	0	2804	logfile
✔	8X2U	38020	2024-04-15	2023-11-10	3.57	2.99	—	3.2	0.007	1.22	0.0	0.06	15.70	0.01	2.037	4.10	0.33	5.7	94.1	0.2	-1.41	0.78	0.74	2.46	3.2	0.005	0.91	2.0	0.04	16.50	0.01	1.681	18.96	4.12	5.4	94.4	0.2	-0.57	0.57	0.79	0.77	2.54	33922	4206	20	0	0	0	0	logfile
✔	8X2H	38010	2024-04-10	2023-11-09	2.9	3.07	2.88	3.0	0.005	0.85	1.0	0.05	20.16	0.00	2.037	16.30	13.38	8.7	91.1	0.2	-4.22	0.60	0.58	0.86	3.0	0.005	0.88	1.0	0.05	19.46	0.00	1.873	15.16	6.08	7.1	92.7	0.2	-1.83	1.29	0.63	0.62	0.80	19088	2363	2	0	1	0	0	logfile
✔	8X2K	38015	2024-04-06	2023-11-09	3.03	3.27	3.09	3.3	0.005	0.73	2.0	0.05	14.07	0.00	1.909	7.35	0.77	4.9	95.0	0.1	-0.74	0.69	0.82	3.33	3.3	0.004	0.60	0.0	0.04	15.79	0.00	2.078	6.53	2.52	4.0	96.0	0.0	-0.06	0.32	0.68	0.85	2.53	8570	1111	6	0	1	2	0	logfile

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