Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UXH	42764	2024-04-11	2023-11-09	3.52	3.85	—	2.1	0.004	0.85	0.0	0.04	14.90	0.01	2.090	13.17	1.58	2.9	97.0	0.1	0.29	0.87	0.80	1.88	2.1	0.003	0.65	0.0	0.04	15.20	0.00	2.123	11.26	0.62	3.0	96.9	0.1	1.19	0.44	0.88	0.83	2.29	131656	16444	12	0	16	0	0	logfile
✔	8UXF	42762	2024-04-13	2023-11-09	3.13	3.54	—	1.9	0.004	0.70	0.0	0.04	14.67	0.01	2.129	10.59	0.58	2.3	97.6	0.0	0.86	0.89	0.85	3.04	1.9	0.003	0.61	0.0	0.04	15.10	0.00	2.046	8.80	0.44	2.9	97.0	0.0	1.51	0.89	0.90	0.88	3.11	138620	17324	12	0	12	0	0	logfile
✔	8X2K	38015	2024-04-06	2023-11-09	3.03	3.27	3.09	3.3	0.005	0.73	2.0	0.05	14.07	0.00	1.909	7.35	0.77	4.9	95.0	0.1	-0.74	0.69	0.82	3.33	3.3	0.004	0.60	0.0	0.04	15.79	0.00	2.078	6.53	2.52	4.0	96.0	0.0	-0.06	0.32	0.68	0.85	2.53	8570	1111	6	0	1	2	0	logfile
✔	8R3K	18871	2024-04-08	2023-11-09	3.43	3.17	3.32	3.3	0.003	0.52	0.0	0.04	18.78	0.00	1.888	7.20	0.00	2.4	97.6	0.0	1.23	0.77	0.86	2.39	3.3	0.004	0.76	1.0	0.04	18.88	0.00	1.925	10.29	2.28	2.5	97.5	0.0	1.21	0.95	0.77	0.86	2.26	14767	1717	7	41	3	0	0	logfile
✔	8UXi	42765	2024-04-11	2023-11-09	3.29	3.79	—	2.0	0.003	0.82	4.0	0.04	14.98	0.01	2.050	12.81	1.28	3.2	96.8	0.1	0.82	0.88	0.82	2.19	2.0	0.004	0.65	0.0	0.04	15.37	0.00	2.125	11.16	0.69	3.2	96.8	0.0	1.43	0.90	0.89	0.87	2.42	131656	16444	12	0	16	0	0	logfile
✔	8R3L	18872	2024-04-15	2023-11-09	3.25	2.90	3.19	3.1	0.002	0.48	0.0	0.04	17.48	0.00	1.945	6.41	0.21	3.0	97.0	0.0	0.70	0.76	0.82	2.43	3.1	0.002	0.48	0.0	0.04	17.82	0.00	1.910	6.72	1.47	3.2	96.8	0.0	0.51	0.39	0.76	0.83	2.32	35425	2149	6	31	0	0	17547	logfile
✔	8X2J	38012	2024-04-10	2023-11-09	2.7	2.99	2.81	3.0	0.021	1.16	0.0	0.32	15.54	0.01	1.902	7.97	0.39	4.9	95.1	0.0	-1.85	0.56	0.75	3.45	3.0	0.003	0.83	0.0	0.05	16.49	0.00	1.802	11.55	1.56	4.2	95.8	0.0	0.31	0.46	0.57	0.77	3.30	19918	2471	12	0	14	0	0	logfile
✔	8UXM	42769	2024-04-16	2023-11-09	3.56	4.02	—	2.0	0.011	0.77	0.0	0.04	14.99	0.01	1.138	12.33	1.07	2.8	97.1	0.1	0.65	0.86	0.82	2.25	2.0	0.011	0.63	0.0	0.04	15.37	0.00	2.133	10.77	0.78	3.0	96.9	0.1	1.41	0.93	0.86	0.83	2.39	143464	17924	20	0	32	0	0	logfile
✔	8UXE	42761	2024-04-13	2023-11-09	3.53	3.86	—	2.2	0.004	0.74	0.0	0.04	15.07	0.01	2.079	13.47	0.79	3.1	96.8	0.1	0.78	0.84	0.82	2.54	2.0	0.002	0.58	0.0	0.04	15.48	0.00	2.129	10.83	0.47	3.0	96.9	0.1	1.32	0.32	0.84	0.82	2.47	138692	17324	12	0	16	0	0	logfile
✔	8UXC	42759	2024-04-13	2023-11-09	2.86	3.52	—	1.8	0.003	0.67	0.0	0.04	14.10	0.01	2.139	9.47	0.03	2.5	97.4	0.1	1.09	0.87	0.84	3.07	1.8	0.004	0.66	0.0	0.04	15.02	0.00	2.106	9.55	0.48	2.8	97.2	0.0	1.45	0.34	0.88	0.87	3.21	138600	17324	12	0	12	0	0	logfile
✔	8X2L	38016	2024-04-06	2023-11-09	2.99	2.32	2.96	3.0	0.006	0.80	0.0	0.05	13.83	0.01	2.102	3.36	0.14	2.6	97.4	0.0	-0.31	0.74	0.76	2.93	3.0	0.004	0.68	0.0	0.04	15.97	0.00	2.150	12.07	4.20	3.3	96.7	0.0	0.32	0.66	0.77	0.81	3.11	7099	885	6	0	9	1	0	logfile
✔	8UXG	42763	2024-04-13	2023-11-09	3.08	3.56	—	2.1	0.003	0.74	0.0	0.04	15.50	0.01	2.011	10.23	1.27	2.3	97.7	0.0	1.03	0.84	0.82	2.79	1.9	0.004	0.60	0.0	0.04	15.56	0.00	2.166	8.60	0.40	2.7	97.2	0.0	1.59	0.39	0.86	0.86	3.04	138712	17324	12	0	16	0	0	logfile
✔	8UX1	42685	2024-04-09	2023-11-08	2.5	2.29	—	2.8	0.006	0.64	0.0	0.04	25.88	0.00	2.132	5.20	1.27	2.2	97.6	0.2	1.25	0.86	0.86	4.03	2.8	0.003	0.57	0.0	0.04	26.19	0.00	2.218	5.99	1.63	2.3	97.7	0.0	1.65	1.07	0.86	0.86	3.70	16395	1332	12	291	0	0	0	logfile
✔	8X1C	37990	2024-04-06	2023-11-06	3.2	3.25	3.24	3.2	0.005	0.89	2.0	0.08	18.43	0.01	1.051	10.94	5.29	4.4	95.2	0.4	-2.42	0.67	0.54	0.97	3.2	0.003	0.66	0.0	0.04	19.79	0.00	2.129	11.55	2.28	5.6	94.4	0.1	-0.28	1.64	0.80	0.83	1.35	56519	6347	35	294	10	0	0	logfile
✔	8R2i	18848	2024-04-10	2023-11-06	2.9	3.54	2.94	3.3	0.021	1.63	0.0	0.09	20.78	0.01	2.210	12.01	0.00	3.3	96.7	0.0	1.58	0.75	0.83	3.31	3.3	0.003	0.89	0.0	0.04	15.87	0.00	1.689	9.73	1.03	2.9	97.1	0.0	1.61	0.36	0.73	0.89	3.18	18054	1923	21	0	58	5	0	logfile
✔	8X19	37988	2024-04-06	2023-11-06	3.2	3.02	3.29	3.2	0.005	0.83	0.0	0.05	20.52	0.01	1.500	20.98	7.61	6.6	92.9	0.5	-2.03	0.59	0.48	1.30	3.1	0.004	0.75	1.0	0.04	20.68	0.00	1.826	13.89	2.85	5.6	94.2	0.2	-0.42	2.12	0.73	0.80	1.27	56704	6372	34	294	11	0	0	logfile
✔	8UW3	42637	2024-04-08	2023-11-06	3.2	3.11	3.18	3.2	0.006	0.64	0.0	0.04	17.22	0.00	1.850	8.61	2.51	5.4	94.5	0.1	0.74	0.79	0.79	2.52	3.2	0.003	0.58	0.0	0.04	18.61	0.00	2.158	13.32	2.59	5.3	94.6	0.1	0.82	0.99	0.82	0.84	2.34	12005	1265	4	73	1	0	0	logfile
✔	8X15	37984	2024-04-06	2023-11-06	3.2	3.28	3.28	3.0	0.004	0.69	0.0	0.05	17.10	0.01	1.169	13.08	4.96	4.6	95.2	0.2	-2.12	0.60	0.44	0.83	3.0	0.007	0.78	0.0	0.05	19.03	0.01	2.098	13.98	2.58	5.7	94.2	0.0	-0.10	0.98	0.76	0.82	1.33	55488	6279	33	274	8	0	0	logfile
✔	8UVT	42628	2024-04-08	2023-11-04	2.9	3.16	2.88	3.1	0.003	0.47	0.0	0.04	15.28	0.00	2.233	8.27	0.00	3.7	96.3	0.0	2.31	0.67	0.83	2.02	3.1	0.003	0.52	0.0	0.04	17.33	0.00	2.233	8.79	2.07	3.9	96.1	0.0	3.47	0.35	0.63	0.82	1.80	12104	1544	4	0	0	0	0	logfile
✔	8UVU	42629	2024-04-08	2023-11-04	3.0	3.23	2.99	3.2	0.003	0.60	0.0	0.04	14.70	0.00	2.246	8.69	0.00	4.3	95.7	0.0	1.70	0.68	0.83	2.96	3.2	0.004	0.65	0.0	0.04	16.24	0.00	2.210	9.67	3.18	5.1	94.9	0.0	1.88	0.26	0.64	0.83	2.95	11976	1516	8	0	8	0	0	logfile

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