Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oT9	17173	2024-04-05	2023-04-20	3.4	3.23	3.29	3.4	0.009	1.75	0.0	0.10	15.35	0.01	2.415	3.56	6.82	4.1	95.9	0.0	-5.00	0.43	0.90	6.48	3.3	0.004	0.73	0.0	0.05	15.50	0.00	2.134	6.26	1.01	1.8	98.2	0.0	-1.92	1.01	0.40	0.88	5.78	3444	450	6	0	0	0	0	logfile
✔	8SKS	40566	2024-04-05	2023-04-20	2.91	3.52	2.94	3.4	0.004	0.55	0.0	0.04	11.98	0.00	1.880	7.37	0.00	3.1	96.9	0.0	0.81	0.82	0.84	5.54	3.4	0.004	0.57	0.0	0.04	15.02	0.00	2.011	6.63	2.85	3.6	96.4	0.0	1.35	1.14	0.84	0.85	5.20	6232	792	8	0	4	0	0	logfile
✔	8oTE	17176	2024-04-06	2023-04-20	3.6	3.19	3.39	4.1	0.009	1.70	8.0	0.10	18.70	0.01	2.378	5.19	6.35	15.8	84.2	0.0	-4.51	0.44	0.82	5.34	4.1	0.004	0.79	0.0	0.05	16.87	0.00	2.157	12.75	5.85	8.1	91.9	0.0	-4.06	1.06	0.39	0.77	4.33	8680	1080	8	0	0	0	0	logfile
✔	8oTJ	17181	2024-04-05	2023-04-20	3.3	3.37	3.07	3.5	0.008	1.80	7.0	0.11	16.48	0.01	2.400	7.78	4.48	12.4	87.6	0.0	-5.06	0.42	0.87	4.78	3.5	0.005	0.79	0.0	0.05	15.82	0.00	2.257	7.30	1.71	6.7	93.3	0.0	-3.11	1.00	0.38	0.83	4.59	4109	539	7	0	0	0	0	logfile
✔	8oTF	17177	2024-04-05	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.004	0.48	0.0	0.05	15.60	0.00	2.337	6.90	2.17	0.0	100.0	0.0	-0.61	0.48	0.43	0.89	5.83	1350	186	6	0	0	0	0	logfile
✔	8oTD	17175	2024-04-05	2023-04-20	2.6	2.53	2.39	2.8	0.008	1.48	4.0	0.10	16.82	0.01	2.478	4.15	4.76	8.3	91.7	0.0	-3.89	0.48	0.88	6.55	2.8	0.004	0.74	0.0	0.05	16.81	0.00	2.213	9.58	4.56	3.2	96.8	0.0	-3.07	1.05	0.46	0.88	5.77	4340	540	4	0	0	0	0	logfile
✔	8oT6	17171	2024-04-05	2023-04-20	2.0	2.14	1.94	2.0	0.007	1.17	0.0	0.07	11.96	0.01	2.631	0.51	1.52	2.7	97.3	0.0	-2.61	0.47	0.93	7.98	1.9	0.002	0.56	0.0	0.05	15.92	0.00	2.207	2.22	0.61	0.8	99.2	0.0	-1.67	2.61	0.45	0.93	7.63	2870	375	5	0	0	0	0	logfile
✔	8oTi	17180	2024-04-05	2023-04-20	2.7	2.46	2.62	2.8	0.012	1.63	0.0	0.10	13.67	0.01	2.388	3.56	5.30	2.7	97.3	0.0	-3.63	0.41	0.92	6.96	2.8	0.003	0.60	0.0	0.05	17.21	0.00	2.385	2.56	5.05	0.7	99.3	0.0	-1.84	1.26	0.38	0.90	5.48	3444	450	6	0	0	0	0	logfile
✔	8oT3	17167	2024-04-05	2023-04-20	2.73	3.21	2.60	3.2	0.014	2.33	0.0	0.13	16.88	0.01	2.559	0.00	0.00	0.0	100.0	0.0	-3.27	0.52	0.76	7.19	3.2	0.004	0.82	0.0	0.05	16.37	0.00	2.121	7.45	3.57	3.8	96.2	0.0	-3.57	1.86	0.42	0.79	7.38	2460	336	12	0	0	0	0	logfile
✔	8SKU	40567	2024-04-13	2023-04-20	3.2	3.47	3.28	3.5	0.004	0.60	0.0	0.05	15.96	0.01	1.940	7.17	0.41	6.7	93.2	0.1	-1.08	0.65	0.72	2.02	3.5	0.003	0.57	0.0	0.04	15.99	0.00	1.933	8.70	2.93	7.3	92.6	0.1	-1.25	0.88	0.66	0.75	2.08	27901	1951	15	0	12	0	13425	logfile
✔	8J4U	35978	2024-04-10	2023-04-20	2.97	3.19	3.06	3.2	0.006	0.72	3.0	0.05	15.67	0.01	2.006	3.89	0.03	7.4	92.6	0.0	-4.94	0.76	0.83	3.45	3.2	0.003	0.58	3.0	0.05	16.97	0.00	1.929	3.10	1.02	5.5	94.5	0.0	-2.08	0.65	0.76	0.85	2.98	128773	8154	35	0	18	0	63203	logfile
✔	8oTG	17178	2024-04-05	2023-04-20	2.1	2.26	2.03	2.1	0.009	1.12	0.0	0.07	11.34	0.01	2.479	1.02	3.03	2.7	97.3	0.0	-2.90	0.45	0.91	7.89	2.1	0.005	0.74	0.0	0.05	14.62	0.00	2.259	2.90	1.21	1.6	98.4	0.0	-1.70	1.12	0.46	0.93	7.10	2870	375	5	0	0	0	0	logfile
✔	8oSL	17160	2024-04-08	2023-04-19	4.9	8.34	6.27	6.8	0.005	0.80	0.0	0.05	28.01	0.00	2.363	2.30	0.00	1.1	98.9	0.0	-0.07	0.81	0.71	—	7.0	0.012	1.04	0.0	0.06	35.58	0.01	1.810	186.47	0.00	13.0	86.5	0.5	-2.30	3.51	0.87	0.83	—	13541	1441	14	294	0	0	301	logfile
✔	8J46	35971	2024-04-05	2023-04-19	3.66	4.32	3.59	4.1	0.004	0.77	0.0	0.05	9.52	0.01	2.463	0.54	0.00	0.9	99.1	0.0	2.69	0.47	0.72	2.69	4.1	0.002	0.57	0.0	0.04	11.11	0.00	2.450	5.13	2.88	2.0	98.0	0.0	3.53	1.08	0.49	0.77	2.12	2158	362	1	0	0	0	0	logfile
✔	8oSK	17157	2024-04-08	2023-04-19	3.6	4.91	—	3.0	0.009	1.12	0.0	0.06	24.39	0.01	2.263	0.52	0.00	0.3	99.7	0.0	1.80	0.86	0.79	0.46	3.0	0.005	0.74	0.0	0.04	26.55	0.00	2.187	11.21	2.35	2.1	97.9	0.0	1.54	1.23	0.87	0.83	0.76	13995	1343	12	248	0	0	0	logfile
✔	8J3Z	35968	2024-04-07	2023-04-18	3.17	3.43	3.25	3.5	0.009	0.95	1.0	0.14	14.28	0.01	1.975	17.22	0.28	5.2	94.8	0.0	-1.65	0.63	0.81	2.02	3.5	0.003	0.63	0.0	0.04	15.63	0.00	1.985	12.19	1.32	3.8	96.2	0.0	-0.39	0.91	0.61	0.82	1.60	9814	1218	1	0	5	0	0	logfile
✔	8J3R	35965	2024-04-07	2023-04-18	2.95	2.52	2.96	3.4	0.003	0.50	0.0	0.04	20.20	0.00	2.060	5.62	2.46	2.0	98.0	0.0	0.87	0.64	0.51	0.81	2.2	0.004	0.64	0.0	0.04	21.61	0.00	1.977	9.14	2.46	2.6	97.4	0.0	1.06	1.37	0.84	0.84	2.62	9526	809	7	140	4	0	0	logfile
✔	8J3W	35967	2024-04-07	2023-04-18	3.07	3.28	3.11	3.3	0.004	0.68	0.0	0.04	13.93	0.00	1.891	16.07	0.00	3.8	96.2	0.0	-1.89	0.58	0.76	2.14	3.3	0.003	0.61	0.0	0.04	15.56	0.00	2.178	12.06	1.88	1.9	98.1	0.0	0.65	1.23	0.56	0.78	1.38	9739	1218	1	0	1	0	0	logfile
✔	8oSG	17152	2024-04-08	2023-04-18	3.8	4.13	3.92	4.0	0.004	0.74	0.0	0.04	18.75	0.00	2.009	9.70	0.19	8.1	91.8	0.1	-1.30	0.80	0.83	0.89	4.0	0.002	0.63	0.0	0.04	18.81	0.00	1.985	8.20	3.70	7.6	92.4	0.0	-0.92	0.31	0.80	0.82	0.71	14536	1833	12	0	10	0	0	logfile
✔	8oSH	17153	2024-04-06	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.65	0.0	0.04	4.66	0.00	2.198	8.69	0.00	15.1	84.9	0.0	-0.88	0.53	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile

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