Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J5Y	33733	2024-04-07	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.003	0.74	0.0	0.04	15.95	0.00	2.112	15.74	2.42	7.6	92.3	0.1	-1.26	1.56	0.12	0.06	0.26	10905	1389	4	0	0	0	0	logfile
✔	8J5Q	35990	2024-04-08	2023-04-24	3.25	3.54	3.32	3.4	0.008	0.93	0.0	0.05	15.30	0.01	2.216	12.78	0.29	3.0	97.0	0.0	-1.09	0.72	0.86	3.25	3.4	0.004	0.60	0.0	0.04	16.12	0.00	2.226	6.88	1.17	3.1	96.9	0.0	0.60	0.41	0.70	0.87	2.13	13187	1737	6	0	10	0	0	logfile
✔	8J5P	35989	2024-04-11	2023-04-24	3.1	2.73	3.16	2.9	0.007	1.02	0.0	0.04	18.34	0.01	2.107	17.84	0.30	3.5	96.5	0.0	2.11	0.66	0.85	2.14	2.8	0.004	0.78	0.0	0.04	18.26	0.00	1.984	6.72	1.98	4.3	95.6	0.0	2.08	1.34	0.67	0.87	2.01	23737	2331	70	0	92	0	0	logfile
✔	8J5T	35993	2024-04-08	2023-04-24	2.98	3.29	3.03	3.2	0.007	0.96	2.0	0.05	16.08	0.01	2.004	13.98	0.65	8.0	92.0	0.0	-2.41	0.73	0.89	3.29	3.2	0.003	0.61	0.0	0.04	16.71	0.00	1.929	6.30	2.62	5.2	94.8	0.0	-0.55	1.25	0.73	0.90	2.47	13234	1740	5	0	5	0	0	logfile
✔	8J5S	35992	2024-04-08	2023-04-24	3.0	3.28	3.04	3.2	0.009	0.85	0.0	0.05	16.46	0.01	2.199	14.03	0.36	6.2	93.8	0.0	-2.34	0.75	0.87	2.41	3.2	0.004	0.64	0.0	0.04	16.69	0.00	1.890	6.88	2.62	4.5	95.5	0.0	-1.10	0.39	0.74	0.89	2.54	13275	1742	6	0	13	0	0	logfile
✔	8J5R	35991	2024-04-08	2023-04-24	3.28	3.61	3.32	3.5	0.007	0.96	8.0	0.07	15.64	0.01	2.145	14.34	0.22	6.2	93.8	0.0	-1.53	0.74	0.87	2.61	3.5	0.003	0.57	0.0	0.04	16.33	0.00	2.223	6.64	2.06	4.2	95.8	0.0	0.03	0.90	0.73	0.89	2.53	13050	1726	5	0	1	0	0	logfile
✔	8J5K	35987	2024-04-10	2023-04-23	2.93	3.61	3.02	3.4	0.012	1.99	0.0	0.15	20.97	0.01	2.201	13.03	2.91	7.7	91.5	0.8	-0.72	0.79	0.83	2.71	3.4	0.003	0.87	0.0	0.06	17.62	0.00	1.969	8.37	1.62	5.0	94.9	0.1	0.40	0.50	0.78	0.85	2.90	71446	7302	94	0	716	0	0	logfile
✔	8oUF	17191	2024-04-09	2023-04-22	3.1	3.00	3.13	3.1	0.006	0.99	0.0	0.07	17.15	0.01	2.213	1.68	0.14	0.9	99.1	0.0	-0.59	0.64	0.76	4.67	3.1	0.003	0.58	0.0	0.04	18.12	0.00	2.145	6.83	2.10	1.6	98.4	0.0	0.14	1.20	0.75	0.84	3.43	15230	1674	10	86	0	0	0	logfile
✔	8oTQ	17182	2024-04-09	2023-04-21	3.22	3.95	3.36	3.7	0.006	0.90	0.0	0.05	19.19	0.00	2.157	15.02	2.99	5.8	94.1	0.1	1.04	0.68	0.83	1.36	3.7	0.002	0.59	0.0	0.04	18.27	0.00	2.227	7.92	1.83	4.5	95.5	0.0	1.62	0.52	0.69	0.84	1.48	16716	2102	4	0	4	0	0	logfile
✔	8oTW	17185	2024-04-07	2023-04-21	3.68	4.23	3.73	4.0	0.004	0.85	0.0	0.04	18.41	0.00	2.149	13.11	0.09	3.7	96.3	0.0	1.81	0.64	0.81	0.82	4.0	0.003	0.68	0.0	0.04	18.33	0.00	2.165	12.64	3.17	3.4	96.6	0.0	2.12	0.30	0.64	0.82	0.73	11571	1522	4	0	2	0	0	logfile
✔	8oTX	17186	2024-04-09	2023-04-21	3.08	3.75	3.14	3.5	0.003	0.44	0.0	0.04	17.93	0.00	2.057	35.10	0.00	6.1	93.9	0.0	2.35	0.74	0.84	1.46	3.6	0.002	0.57	0.0	0.04	17.81	0.00	2.196	8.16	2.24	4.7	95.2	0.1	2.04	0.32	0.76	0.85	1.48	15966	2108	6	0	4	2	0	logfile
✔	8J5D	35985	2024-04-07	2023-04-21	3.0	3.25	3.07	3.2	0.003	0.71	0.0	0.04	15.67	0.00	2.144	12.52	2.43	5.0	95.0	0.0	0.07	0.69	0.73	2.71	3.2	0.004	0.71	0.0	0.04	16.46	0.01	2.111	13.93	4.66	6.1	93.9	0.0	-0.33	0.31	0.68	0.73	2.32	9531	1244	4	0	0	0	0	logfile
✔	8oTS	17183	2024-04-08	2023-04-21	3.3	4.05	3.44	3.6	0.009	1.03	0.0	0.06	25.59	0.01	2.508	0.66	0.63	0.3	99.7	0.0	1.70	0.89	0.85	2.32	3.7	0.004	0.54	0.0	0.03	25.64	0.00	2.192	6.65	1.74	1.2	98.8	0.0	4.68	1.35	0.89	0.87	1.19	13160	985	18	254	8	0	0	logfile
✔	8oTT	17184	2024-04-08	2023-04-21	3.3	3.86	3.31	3.4	0.005	0.77	0.0	0.05	24.30	0.01	2.513	1.15	0.16	1.3	98.7	0.0	1.04	0.89	0.82	2.67	3.4	0.004	0.65	2.0	0.03	26.84	0.00	2.176	8.11	1.59	2.3	97.7	0.0	3.62	0.79	0.91	0.89	2.17	12973	859	17	288	8	0	0	logfile
✔	8J4U	35978	2024-04-10	2023-04-20	2.97	3.19	3.06	3.2	0.006	0.72	3.0	0.05	15.67	0.01	2.006	3.89	0.03	7.4	92.6	0.0	-4.94	0.76	0.83	3.45	3.2	0.003	0.58	3.0	0.05	16.97	0.00	1.929	3.10	1.02	5.5	94.5	0.0	-2.08	0.65	0.76	0.85	2.98	128773	8154	35	0	18	0	63203	logfile
✔	8SL1	40571	2024-04-06	2023-04-20	3.13	3.37	3.20	3.4	0.003	0.61	0.0	0.06	16.40	0.00	2.223	8.71	0.68	5.0	95.0	0.0	-0.41	0.64	0.73	2.11	3.4	0.002	0.56	0.0	0.04	16.58	0.00	2.121	8.55	2.32	4.0	96.0	0.0	0.28	0.35	0.63	0.73	1.95	6608	843	3	0	6	1	0	logfile
✔	8oT1	17166	2024-04-05	2023-04-20	2.59	3.30	2.25	3.4	0.013	2.40	0.0	0.13	17.35	0.01	2.477	0.00	0.00	0.0	100.0	0.0	-3.37	0.47	0.69	6.48	3.4	0.005	0.95	0.0	0.05	16.67	0.00	2.061	15.50	4.37	7.1	92.9	0.0	-1.96	1.53	0.39	0.73	5.57	2460	336	12	0	0	0	0	logfile
✔	8SKS	40566	2024-04-05	2023-04-20	2.91	3.52	2.94	3.4	0.004	0.55	0.0	0.04	11.98	0.00	1.880	7.37	0.00	3.1	96.9	0.0	0.81	0.82	0.84	5.54	3.4	0.004	0.57	0.0	0.04	15.02	0.00	2.011	6.63	2.85	3.6	96.4	0.0	1.35	1.14	0.84	0.85	5.20	6232	792	8	0	4	0	0	logfile
✔	8SKU	40567	2024-04-13	2023-04-20	3.2	3.47	3.28	3.5	0.004	0.60	0.0	0.05	15.96	0.01	1.940	7.17	0.41	6.7	93.2	0.1	-1.08	0.65	0.72	2.02	3.5	0.003	0.57	0.0	0.04	15.99	0.00	1.933	8.70	2.93	7.3	92.6	0.1	-1.25	0.88	0.66	0.75	2.08	27901	1951	15	0	12	0	13425	logfile
✔	8oTG	17178	2024-04-05	2023-04-20	2.1	2.26	2.03	2.1	0.009	1.12	0.0	0.07	11.34	0.01	2.479	1.02	3.03	2.7	97.3	0.0	-2.90	0.45	0.91	7.89	2.1	0.005	0.74	0.0	0.05	14.62	0.00	2.259	2.90	1.21	1.6	98.4	0.0	-1.70	1.12	0.46	0.93	7.10	2870	375	5	0	0	0	0	logfile

• ← previous
• Page 67 of 610
• next →