Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SN8	40616	2024-04-08	2023-04-26	3.7	3.84	3.67	3.7	0.003	0.54	0.0	0.03	25.62	0.00	1.331	8.31	0.00	2.1	97.9	0.0	2.06	0.84	0.86	0.82	3.7	0.003	0.59	0.0	0.03	26.42	0.00	2.121	7.90	3.35	2.6	97.4	0.0	1.96	0.33	0.83	0.85	0.56	14600	1076	14	294	2	0	0	logfile
✔	8oVX	17225	2024-04-06	2023-04-26	3.4	4.18	3.32	3.7	0.004	0.98	0.0	0.05	13.53	0.00	2.209	6.80	0.00	4.8	95.2	0.0	-1.04	0.80	0.70	1.05	3.8	0.003	0.73	0.0	0.04	15.86	0.00	2.094	16.38	2.99	4.8	95.2	0.0	0.84	0.65	0.82	0.72	1.17	6763	885	6	0	0	0	0	logfile
✔	8oW1	17227	2024-04-11	2023-04-26	3.7	5.06	5.11	3.9	0.003	0.65	0.0	0.04	18.38	0.00	1.800	10.59	1.37	3.0	97.0	0.0	0.32	0.75	0.49	0.28	3.9	0.005	0.75	0.0	0.04	19.38	0.00	2.024	22.26	1.61	3.9	96.1	0.0	0.61	4.52	0.88	0.76	0.45	78671	8932	42	306	0	0	0	logfile
✔	8J6P	36010	2024-04-07	2023-04-26	2.55	2.85	2.65	2.8	0.005	0.78	0.0	0.06	13.10	0.01	2.120	8.32	0.00	2.7	97.1	0.2	-0.04	0.63	0.76	3.32	2.8	0.002	0.52	0.0	0.04	15.80	0.00	2.125	8.98	1.41	2.4	97.6	0.0	0.78	0.51	0.60	0.79	4.13	9189	1151	6	0	5	1	0	logfile
✔	8oVW	17224	2024-04-13	2023-04-26	3.4	3.30	3.57	3.5	0.004	0.78	0.0	0.05	16.45	0.01	2.212	5.45	0.13	3.1	96.9	0.0	-0.07	0.69	0.78	1.66	3.4	0.003	0.57	0.0	0.04	18.13	0.00	2.144	10.97	1.96	3.1	96.9	0.0	2.09	0.64	0.71	0.82	1.67	28461	3384	17	54	0	0	0	logfile
✔	8SN6	40614	2024-04-08	2023-04-26	3.7	3.89	3.71	3.8	0.004	0.57	0.0	0.03	25.93	0.00	1.329	7.45	0.11	2.5	97.5	0.0	1.99	0.85	0.86	1.06	3.8	0.004	0.65	0.0	0.04	26.32	0.00	2.117	9.87	2.06	2.8	97.2	0.0	1.94	0.42	0.84	0.86	0.85	14600	1076	14	294	2	0	0	logfile
✔	8J6S	36013	2024-04-07	2023-04-26	3.8	5.06	3.99	3.8	0.004	0.79	0.0	0.04	29.58	0.01	1.907	22.08	1.06	3.9	96.1	0.0	-0.40	0.83	0.73	1.29	3.9	0.005	0.83	0.0	0.04	30.01	0.01	1.991	24.17	4.76	3.7	96.3	0.0	0.21	1.29	0.88	0.84	0.57	10030	933	12	197	0	0	0	logfile
✔	8J6i	36005	2024-04-06	2023-04-26	2.92	2.81	2.83	3.0	0.006	0.63	0.0	0.04	16.60	0.01	2.167	8.17	0.00	3.7	96.2	0.1	1.37	0.53	0.71	2.10	3.0	0.004	0.62	0.0	0.04	17.11	0.00	2.054	9.44	5.13	4.0	96.0	0.1	0.69	0.69	0.64	0.85	3.68	8801	1131	6	0	1	0	0	logfile
✔	8J6R	36012	2024-04-06	2023-04-26	2.76	2.15	2.84	2.0	0.004	0.62	0.0	0.06	13.55	0.01	2.116	6.13	0.00	2.6	97.4	0.0	0.52	0.76	0.75	3.17	2.0	0.003	0.52	0.0	0.04	16.10	0.00	2.174	7.35	1.61	2.3	97.7	0.0	0.77	0.34	0.77	0.79	3.31	9120	1151	6	0	2	1	0	logfile
✔	8J6F	36003	2024-04-05	2023-04-25	3.3	3.50	3.25	3.5	0.009	1.06	0.0	0.06	14.30	0.01	2.208	7.88	0.00	9.8	90.2	0.0	-3.18	0.64	0.73	2.32	3.5	0.005	0.74	0.0	0.05	16.05	0.01	2.050	17.33	4.10	10.4	89.6	0.0	-2.48	0.38	0.65	0.76	2.58	3870	496	5	0	1	0	0	logfile
✔	8oVB	17209	2024-04-12	2023-04-25	3.4	2.33	—	2.2	0.004	0.52	0.0	0.04	13.46	0.00	2.129	2.87	0.00	1.9	98.1	0.0	1.77	0.64	0.70	2.92	2.2	0.005	0.61	0.0	0.04	16.07	0.00	2.075	6.43	1.81	2.7	97.3	0.0	1.12	0.67	0.74	0.79	2.74	26116	1655	3	0	0	0	13067	logfile
✔	8J6D	36001	2024-04-06	2023-04-25	3.1	2.42	3.21	3.1	0.004	0.73	0.0	0.04	12.64	0.00	2.133	7.07	0.38	3.8	96.2	0.0	-1.02	0.77	0.76	3.05	3.1	0.003	0.65	0.0	0.04	14.64	0.00	2.100	10.25	3.30	3.5	96.5	0.0	-0.12	1.24	0.77	0.76	2.03	8149	1123	6	0	0	0	0	logfile
✔	8oUZ	17206	2024-04-08	2023-04-25	2.2	2.43	2.22	2.4	0.003	0.56	0.0	0.04	16.59	0.00	1.833	4.42	1.00	3.4	96.6	0.0	1.04	0.75	0.79	4.38	2.4	0.003	0.55	0.0	0.04	16.42	0.00	1.755	5.44	1.62	3.5	96.5	0.0	0.78	0.46	0.73	0.79	4.32	14822	924	11	0	6	142	7373	logfile
✔	8oUY	17205	2024-04-08	2023-04-25	3.4	2.97	3.46	3.3	0.002	0.52	0.0	0.04	17.65	0.00	1.811	4.62	0.00	4.5	95.5	0.0	-0.78	0.71	0.78	2.26	3.3	0.004	0.55	0.0	0.04	17.40	0.00	1.702	5.37	1.62	6.5	93.5	0.0	-0.29	0.32	0.71	0.78	2.26	14695	925	7	0	6	0	7380	logfile
✔	8J5Z	35996	2024-04-12	2023-04-24	4.75	4.34	4.69	4.2	0.002	0.47	0.0	0.04	12.56	0.00	2.224	6.20	3.96	5.1	94.9	0.0	-0.77	0.80	0.75	—	4.2	0.002	0.59	0.0	0.04	11.52	0.00	2.211	9.83	0.00	5.7	94.3	0.0	-0.97	1.35	0.81	0.75	—	24856	3056	8	0	4	0	0	logfile
✔	8J62	35999	2024-04-07	2023-04-24	2.5	3.25	2.43	3.0	0.002	0.46	0.0	0.04	18.88	0.00	2.216	9.71	2.91	0.9	99.1	0.0	1.53	0.80	0.83	3.47	3.0	0.003	0.65	0.0	0.04	18.91	0.00	2.207	10.17	3.51	1.3	98.7	0.0	1.66	1.28	0.78	0.85	3.62	10448	1182	14	38	2	0	0	logfile
✔	8SLX	40582	2024-04-10	2023-04-24	3.23	3.68	3.11	3.5	0.004	0.48	0.0	0.04	13.46	0.00	2.353	5.45	0.00	1.2	98.8	0.0	1.44	0.76	0.83	3.04	3.5	0.002	0.49	0.0	0.04	14.22	0.00	2.320	5.74	2.34	1.8	98.2	0.0	2.41	0.38	0.76	0.85	2.25	17885	2376	10	0	5	4	0	logfile
✔	8J5P	35989	2024-04-11	2023-04-24	3.1	2.73	3.16	2.9	0.007	1.02	0.0	0.04	18.34	0.01	2.107	17.84	0.30	3.5	96.5	0.0	2.11	0.66	0.85	2.14	2.8	0.004	0.78	0.0	0.04	18.26	0.00	1.984	6.72	1.98	4.3	95.6	0.0	2.08	1.34	0.67	0.87	2.01	23737	2331	70	0	92	0	0	logfile
✔	8SLY	40583	2024-04-10	2023-04-24	3.32	3.53	3.22	3.4	0.006	0.66	0.0	0.05	15.01	0.00	2.205	6.02	0.00	1.7	98.3	0.0	1.34	0.75	0.86	2.93	3.4	0.002	0.51	0.0	0.03	14.66	0.00	2.234	5.08	1.39	2.1	97.9	0.0	2.43	0.39	0.75	0.89	2.75	18257	2364	12	0	13	4	0	logfile
✔	8J5S	35992	2024-04-08	2023-04-24	3.0	3.28	3.04	3.2	0.009	0.85	0.0	0.05	16.46	0.01	2.199	14.03	0.36	6.2	93.8	0.0	-2.34	0.75	0.87	2.41	3.2	0.004	0.64	0.0	0.04	16.69	0.00	1.890	6.88	2.62	4.5	95.5	0.0	-1.10	0.39	0.74	0.89	2.54	13275	1742	6	0	13	0	0	logfile

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