Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J6L	36007	2024-04-06	2023-04-26	3.05	2.91	2.93	3.1	0.003	0.62	0.0	0.04	15.24	0.00	2.061	8.53	0.21	3.8	96.1	0.2	0.65	0.50	0.63	1.73	3.0	0.004	0.67	0.0	0.04	16.33	0.00	2.050	12.25	4.67	4.8	95.1	0.1	-0.01	0.67	0.63	0.77	2.04	8839	1138	6	0	1	0	0	logfile
✔	8SN5	40613	2024-04-08	2023-04-26	3.9	4.01	3.84	3.9	0.003	0.57	0.0	0.03	25.64	0.00	1.329	9.43	0.11	2.8	97.2	0.0	2.26	0.85	0.85	1.02	3.9	0.004	0.64	0.0	0.04	26.58	0.00	2.103	11.29	2.49	3.6	96.4	0.0	1.80	1.42	0.85	0.86	1.00	14600	1076	14	294	2	0	0	logfile
✔	8SMW	40604	2024-04-08	2023-04-26	3.3	3.47	3.30	3.5	0.003	0.53	0.0	0.03	26.23	0.00	1.329	5.51	0.00	2.6	97.4	0.0	1.72	0.73	0.85	3.28	3.5	0.004	0.54	0.0	0.04	26.51	0.00	2.198	5.39	0.93	2.4	97.6	0.0	1.87	1.35	0.71	0.86	2.81	13998	1000	13	294	2	0	0	logfile
✔	8SN4	40612	2024-04-08	2023-04-26	3.7	3.82	3.66	3.7	0.003	0.55	0.0	0.03	25.75	0.00	1.331	8.20	0.00	2.3	97.7	0.0	1.84	0.82	0.85	1.24	3.7	0.004	0.60	0.0	0.04	26.55	0.00	2.080	8.20	3.03	3.1	96.9	0.0	1.75	0.36	0.82	0.86	0.85	14600	1076	14	294	2	0	0	logfile
✔	8SN7	40615	2024-04-08	2023-04-26	3.7	3.83	3.62	3.7	0.004	0.57	0.0	0.04	25.76	0.00	1.330	7.72	0.00	3.2	96.8	0.0	1.83	0.84	0.86	1.03	3.7	0.003	0.61	0.0	0.03	26.59	0.00	2.110	8.13	1.73	3.1	96.9	0.0	1.82	0.38	0.83	0.86	0.88	14600	1076	14	294	2	0	0	logfile
✔	8SN9	40617	2024-04-08	2023-04-26	3.9	3.90	3.78	3.8	0.003	0.55	0.0	0.03	25.89	0.00	1.329	7.72	0.00	2.5	97.5	0.0	1.88	0.83	0.84	0.89	3.8	0.003	0.62	0.0	0.04	26.37	0.00	2.161	9.25	0.87	2.4	97.6	0.0	1.66	1.37	0.83	0.84	0.58	14591	1076	14	294	2	0	0	logfile
✔	8SMX	40605	2024-04-10	2023-04-26	3.2	3.37	3.21	3.3	0.003	0.57	0.0	0.04	26.38	0.00	1.330	4.49	0.00	1.9	98.1	0.0	1.43	0.74	0.85	2.99	3.3	0.004	0.58	0.0	0.04	26.69	0.00	2.203	4.33	0.82	2.3	97.7	0.0	1.43	0.18	0.73	0.87	2.94	13998	1000	13	294	2	0	0	logfile
✔	8SMR	40601	2024-04-12	2023-04-26	2.7	2.39	2.78	2.4	0.007	0.85	2.0	0.06	17.72	0.00	1.975	9.47	0.92	2.7	97.3	0.0	0.77	0.76	0.85	3.97	2.4	0.004	0.74	0.0	0.04	17.70	0.00	2.096	11.00	1.97	2.5	97.5	0.0	0.95	0.40	0.77	0.87	3.71	24154	3000	24	0	24	0	0	logfile
✔	8SNA	40618	2024-04-08	2023-04-26	4.0	4.05	3.94	3.9	0.004	0.59	0.0	0.03	25.68	0.00	1.330	10.00	0.00	3.3	96.7	0.0	1.91	0.85	0.86	—	3.9	0.003	0.62	0.0	0.04	26.36	0.00	2.118	10.93	1.30	3.1	96.9	0.0	1.85	0.42	0.85	0.85	—	14591	1076	14	294	2	0	0	logfile
✔	8SMZ	40607	2024-04-08	2023-04-26	3.2	3.42	3.24	3.4	0.004	0.57	0.0	0.04	26.57	0.00	1.330	5.43	0.00	2.8	97.2	0.0	1.15	0.73	0.84	3.11	3.4	0.003	0.55	0.0	0.03	26.70	0.00	2.192	4.65	1.40	2.6	97.4	0.0	1.71	0.19	0.71	0.85	2.66	13998	1000	13	294	2	0	0	logfile
✔	8SN0	40608	2024-04-08	2023-04-26	3.2	3.37	3.21	3.4	0.004	0.56	0.0	0.04	26.42	0.00	1.331	5.43	0.00	2.4	97.6	0.0	1.04	0.75	0.85	2.59	3.4	0.003	0.55	0.0	0.04	26.87	0.00	2.180	5.28	1.64	2.7	97.3	0.0	1.66	0.20	0.74	0.86	2.48	13989	1000	13	294	2	0	0	logfile
✔	8oVM	17223	2024-04-05	2023-04-26	3.24	3.35	1.89	3.4	0.007	0.99	0.0	0.09	11.00	0.00	2.447	9.68	0.00	2.9	97.1	0.0	-3.60	0.43	0.78	4.59	3.4	0.003	0.66	0.0	0.05	14.40	0.00	2.423	8.19	6.43	6.5	93.5	0.0	-2.87	1.00	0.45	0.79	4.56	1360	180	5	0	0	0	0	logfile
✔	8SML	40590	2024-04-12	2023-04-26	3.3	3.35	3.20	3.3	0.010	1.01	0.0	0.06	11.40	0.01	2.064	1.02	0.14	2.1	97.8	0.1	0.50	0.53	0.68	2.49	3.3	0.003	0.62	0.0	0.04	14.85	0.00	2.165	5.97	1.08	2.7	97.3	0.0	-0.27	1.30	0.55	0.72	2.94	24628	1594	8	0	6	0	12234	logfile
✔	8J6S	36013	2024-04-07	2023-04-26	3.8	5.06	3.99	3.8	0.004	0.79	0.0	0.04	29.58	0.01	1.907	22.08	1.06	3.9	96.1	0.0	-0.40	0.83	0.73	1.29	3.9	0.005	0.83	0.0	0.04	30.01	0.01	1.991	24.17	4.76	3.7	96.3	0.0	0.21	1.29	0.88	0.84	0.57	10030	933	12	197	0	0	0	logfile
✔	8SMY	40606	2024-04-10	2023-04-26	3.2	3.41	3.24	3.4	0.003	0.54	0.0	0.03	26.40	0.01	1.330	5.54	0.00	1.9	98.1	0.0	1.40	0.73	0.85	3.28	3.4	0.005	0.57	0.0	0.04	26.73	0.00	2.171	3.79	2.34	3.4	96.6	0.0	1.28	0.18	0.72	0.86	2.95	13998	1000	13	294	2	0	0	logfile
✔	8SN1	40609	2024-04-10	2023-04-26	3.3	3.44	3.29	3.4	0.003	0.52	0.0	0.03	26.48	0.00	1.329	5.23	0.12	2.0	98.0	0.0	1.60	0.71	0.84	3.21	3.4	0.005	0.59	0.0	0.04	27.09	0.00	2.212	4.84	1.40	3.3	96.7	0.0	1.23	1.35	0.72	0.87	3.15	13998	1000	13	294	2	0	0	logfile
✔	8SMV	40603	2024-04-06	2023-04-26	2.74	3.28	2.72	3.2	0.004	0.65	0.0	0.04	12.72	0.00	2.162	1.85	0.00	3.0	97.0	0.0	0.53	0.76	0.85	3.47	3.2	0.002	0.50	0.0	0.04	15.82	0.00	2.252	4.61	1.82	1.8	98.2	0.0	0.97	1.31	0.74	0.87	2.58	8169	1034	6	0	1	0	0	logfile
✔	8oVK	17218	2024-04-05	2023-04-26	2.88	3.04	1.81	3.2	0.012	1.80	0.0	0.11	14.99	0.01	2.386	4.35	12.90	5.3	94.7	0.0	-1.83	0.53	0.84	5.68	3.1	0.005	0.65	0.0	0.05	18.17	0.00	2.310	10.87	1.61	1.8	98.2	0.0	-3.17	1.21	0.53	0.86	5.53	3060	400	10	0	0	0	0	logfile
✔	8SMK	40589	2024-04-09	2023-04-26	3.5	3.69	3.50	3.6	0.011	1.38	0.0	0.06	11.02	0.01	2.054	0.39	0.00	1.5	98.5	0.0	1.26	0.68	0.80	3.28	3.6	0.004	0.65	0.0	0.04	14.46	0.00	2.072	7.92	2.31	3.7	96.3	0.0	0.92	1.45	0.73	0.84	2.66	15298	1982	8	0	8	0	0	logfile
✔	8SN3	40611	2024-04-08	2023-04-26	3.8	3.89	3.81	3.8	0.003	0.55	0.0	0.03	25.55	0.00	1.329	8.86	0.00	2.6	97.4	0.0	1.98	0.83	0.84	1.28	3.8	0.004	0.63	0.0	0.04	26.57	0.00	2.088	10.09	2.49	2.9	97.1	0.0	1.65	1.39	0.82	0.84	0.91	14612	1078	14	294	2	0	0	logfile

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