Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oWJ	17238	2024-04-05	2023-04-28	3.75	3.75	3.51	4.1	0.012	2.26	0.0	0.11	15.84	0.02	2.610	8.57	3.57	0.0	100.0	0.0	-1.73	0.45	0.61	2.82	4.2	0.005	0.91	0.0	0.05	17.00	0.00	2.299	21.60	2.86	8.8	91.2	0.0	-3.23	1.92	0.49	0.73	2.85	2720	360	10	0	0	0	0	logfile
✔	8J7S	36047	2024-04-14	2023-04-28	2.84	4.04	2.92	3.0	0.003	0.66	0.0	0.04	20.38	0.00	2.173	12.29	4.65	6.9	93.1	0.0	-1.12	0.80	0.70	1.53	3.1	0.003	0.75	0.0	0.04	20.24	0.00	2.107	14.27	2.73	6.3	93.6	0.1	-0.87	1.24	0.90	0.82	1.45	31812	3488	16	163	0	0	0	logfile
✔	8SoC	40653	2024-04-13	2023-04-28	3.5	3.90	3.58	3.6	0.004	0.59	0.0	0.04	12.44	0.01	2.039	5.04	2.13	5.5	94.4	0.1	-1.42	0.79	0.68	1.44	3.6	0.003	0.58	0.0	0.04	14.60	0.00	1.964	10.12	2.01	4.7	95.2	0.1	-0.37	2.60	0.81	0.71	1.23	29751	1860	5	0	1	0	14881	logfile
✔	8J7V	36050	2024-04-07	2023-04-28	2.79	2.88	2.79	2.8	0.004	0.73	0.0	0.05	16.71	0.01	2.208	7.08	1.54	3.3	96.7	0.0	0.39	0.62	0.79	2.92	2.8	0.003	0.66	0.0	0.04	17.00	0.00	2.187	9.81	2.67	2.8	97.2	0.0	1.42	0.87	0.73	0.80	2.97	11083	1432	6	0	0	0	0	logfile
✔	8SNX	40641	2024-04-08	2023-04-28	3.4	3.30	3.34	3.3	0.003	0.57	0.0	0.04	15.10	0.00	2.202	10.24	0.33	3.0	97.0	0.0	1.44	0.71	0.84	2.87	3.3	0.006	0.63	0.0	0.04	16.46	0.00	2.077	11.36	2.74	3.9	96.1	0.0	1.13	1.11	0.73	0.87	2.59	13741	1675	6	10	0	0	0	logfile
✔	8SNY	40642	2024-04-08	2023-04-28	3.41	3.37	3.52	3.4	0.004	0.62	1.0	0.04	15.35	0.00	1.932	13.38	0.33	3.5	96.5	0.0	0.92	0.71	0.81	2.02	3.4	0.003	0.61	1.0	0.04	17.30	0.00	2.173	14.21	2.99	3.4	96.6	0.0	0.86	0.36	0.72	0.84	1.77	13744	1680	6	8	0	0	0	logfile
✔	8oX0	17251	2024-04-08	2023-04-28	2.52	2.85	2.85	2.9	0.007	0.88	0.0	0.06	27.18	0.01	2.156	2.71	0.00	1.0	99.0	0.0	1.78	0.77	0.79	4.78	2.9	0.004	0.60	0.0	0.04	28.24	0.00	2.103	4.02	1.22	1.7	98.3	0.0	2.70	0.24	0.84	0.89	3.75	12271	787	20	290	0	57	0	logfile
✔	8J7U	36049	2024-04-07	2023-04-28	3.12	3.20	3.07	3.1	0.004	0.83	0.0	0.05	15.33	0.01	1.982	8.65	1.88	3.7	96.3	0.0	0.27	0.60	0.75	2.50	3.1	0.005	0.72	0.0	0.05	15.90	0.00	2.047	13.50	4.81	3.9	96.1	0.0	0.68	0.48	0.66	0.68	2.22	11003	1423	8	0	2	0	0	logfile
✔	8oX1	17252	2024-04-08	2023-04-28	2.7	3.00	2.89	3.0	0.009	1.05	1.0	0.06	26.00	0.01	2.326	5.33	0.00	1.8	98.2	0.0	0.87	0.82	0.89	4.59	3.0	0.004	0.59	0.0	0.03	27.20	0.00	2.277	6.28	0.66	1.5	98.5	0.0	2.21	0.89	0.83	0.90	3.47	13258	905	19	290	0	11	0	logfile
✔	8J7R	36046	2024-04-05	2023-04-28	3.7	3.03	3.63	3.4	0.010	1.34	0.0	0.13	24.43	0.00	2.220	9.29	6.85	2.5	97.5	0.0	-0.13	0.69	0.76	0.98	3.0	0.003	0.54	0.0	0.03	22.81	0.00	2.217	9.86	3.20	2.5	97.5	0.0	2.94	1.36	0.71	0.80	0.57	4034	238	2	97	3	1	0	logfile
✔	8So0	40644	2024-04-11	2023-04-28	2.79961	2.85	2.77	2.9	0.002	0.41	0.0	0.04	8.08	0.00	1.427	1.87	0.08	1.9	98.1	0.0	1.96	0.78	0.87	4.67	2.9	0.002	0.50	0.0	0.04	13.21	0.00	1.860	4.58	1.25	2.0	98.0	0.0	1.19	1.09	0.78	0.88	4.21	21402	1343	5	0	2	0	10646	logfile
✔	8J80	36055	2024-04-07	2023-04-28	2.68	2.84	2.75	2.8	0.005	0.73	0.0	0.05	17.01	0.01	1.989	6.76	3.05	3.5	96.5	0.0	0.48	0.53	0.72	2.53	2.8	0.003	0.60	0.0	0.04	17.24	0.00	2.117	7.84	1.77	2.7	97.3	0.0	1.75	0.48	0.66	0.72	2.79	11172	1444	7	0	1	0	0	logfile
✔	8SoD	40654	2024-04-15	2023-04-28	3.4	3.95	3.65	3.6	0.003	0.59	0.0	0.04	13.24	0.01	1.989	5.30	2.73	6.8	93.2	0.0	-2.70	0.74	0.57	1.35	3.6	0.004	0.64	0.0	0.04	15.08	0.00	1.923	14.02	1.97	7.4	92.6	0.0	-1.42	4.56	0.77	0.65	1.40	36045	2271	7	0	1	0	17995	logfile
✔	8J7W	36051	2024-04-07	2023-04-28	2.92	2.91	2.81	2.9	0.004	0.74	0.0	0.05	16.93	0.01	1.831	7.85	2.60	3.5	96.5	0.0	0.30	0.51	0.67	2.47	2.8	0.004	0.68	0.0	0.05	17.09	0.00	2.115	9.36	3.09	3.3	96.7	0.0	0.99	0.38	0.67	0.71	2.49	11026	1425	8	0	2	0	0	logfile
✔	8J7X	36052	2024-04-07	2023-04-28	3.4	3.93	3.38	3.7	0.002	0.45	0.0	0.04	10.17	0.00	2.213	4.79	0.16	2.4	97.5	0.1	1.75	0.74	0.78	1.98	3.7	0.003	0.63	0.0	0.04	14.61	0.00	2.106	8.55	2.74	3.0	97.0	0.0	1.62	1.60	0.77	0.87	2.18	11136	1440	6	0	0	0	0	logfile
✔	8oWE	17235	2024-04-05	2023-04-27	3.75	3.64	3.54	3.8	0.014	2.47	20.0	0.17	22.52	0.03	1.831	11.09	18.33	1.4	98.6	0.0	-2.67	0.41	0.73	5.00	3.7	0.004	0.81	0.0	0.05	18.08	0.00	2.270	14.21	6.33	7.7	92.3	0.0	-3.69	1.48	0.42	0.76	5.13	2940	385	10	0	0	0	0	logfile
✔	8J74	36025	2024-04-06	2023-04-27	3.6	3.95	3.85	3.9	0.004	0.73	0.0	0.05	24.91	0.00	2.203	15.84	0.00	6.0	94.0	0.0	0.74	0.63	0.81	1.38	3.9	0.003	0.66	0.0	0.04	17.04	0.00	2.155	12.91	3.01	4.9	95.1	0.0	1.08	0.40	0.62	0.81	1.13	8288	1030	6	0	14	0	0	logfile
✔	8oWD	17234	2024-04-05	2023-04-27	3.28	3.36	1.89	3.4	0.012	2.44	0.0	0.12	21.08	0.00	2.506	5.03	16.13	0.0	100.0	0.0	-0.81	0.49	0.81	4.66	3.4	0.004	0.73	0.0	0.05	17.20	0.00	2.197	11.39	7.74	1.1	98.9	0.0	-3.51	0.69	0.46	0.80	6.23	1525	200	5	0	0	0	0	logfile
✔	8SML	40590	2024-04-12	2023-04-26	3.3	3.35	3.20	3.3	0.010	1.01	0.0	0.06	11.40	0.01	2.064	1.02	0.14	2.1	97.8	0.1	0.50	0.53	0.68	2.49	3.3	0.003	0.62	0.0	0.04	14.85	0.00	2.165	5.97	1.08	2.7	97.3	0.0	-0.27	1.30	0.55	0.72	2.94	24628	1594	8	0	6	0	12234	logfile
✔	8J6L	36007	2024-04-06	2023-04-26	3.05	2.91	2.93	3.1	0.003	0.62	0.0	0.04	15.24	0.00	2.061	8.53	0.21	3.8	96.1	0.2	0.65	0.50	0.63	1.73	3.0	0.004	0.67	0.0	0.04	16.33	0.00	2.050	12.25	4.67	4.8	95.1	0.1	-0.01	0.67	0.63	0.77	2.04	8839	1138	6	0	1	0	0	logfile

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