Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oX8	17260	2024-04-07	2023-05-01	2.98	3.37	3.05	3.3	0.005	0.55	0.0	0.04	14.91	0.00	1.913	6.55	0.00	4.3	95.7	0.0	-0.95	0.62	0.78	4.08	3.3	0.003	0.56	0.0	0.04	16.15	0.00	1.951	7.06	1.33	2.6	97.4	0.0	0.38	0.38	0.63	0.81	3.07	11872	1452	6	0	7	1	0	logfile
✔	8SP0	40672	2024-04-09	2023-05-01	3.33	2.29	3.41	2.1	0.003	0.53	0.0	0.04	17.61	0.00	1.710	7.29	0.00	5.6	94.4	0.0	-0.53	0.70	0.67	2.53	2.1	0.003	0.55	0.0	0.04	19.01	0.00	2.002	8.27	1.95	5.4	94.6	0.0	-0.39	0.40	0.71	0.69	1.94	16270	1776	10	82	2	0	0	logfile
✔	8J88	36063	2024-04-06	2023-05-01	3.49	4.36	3.55	3.5	0.002	0.56	0.0	0.04	11.87	0.00	2.205	5.61	0.00	4.8	95.2	0.0	-0.95	0.81	0.59	0.05	3.5	0.002	0.55	0.0	0.04	13.96	0.00	2.179	9.69	0.59	5.4	94.6	0.0	0.27	1.05	0.82	0.62	-0.01	7846	954	2	0	0	0	0	logfile
✔	8oX7	17259	2024-04-07	2023-05-01	2.56	2.97	2.59	2.9	0.004	0.56	0.0	0.04	14.91	0.00	1.947	5.68	0.08	3.7	96.3	0.0	-0.45	0.68	0.79	3.76	2.9	0.002	0.52	0.0	0.04	16.91	0.00	2.000	7.94	2.29	2.4	97.6	0.0	0.26	0.37	0.65	0.79	3.07	11755	1440	5	0	7	1	0	logfile
✔	8J8J	36071	2024-04-06	2023-05-01	2.76	2.89	2.73	2.9	0.011	1.19	1.0	0.06	19.32	0.00	1.717	4.57	0.00	4.1	95.9	0.0	-2.54	0.65	0.84	2.59	2.9	0.002	0.59	0.0	0.04	17.54	0.00	2.040	4.28	1.79	3.6	96.4	0.0	1.74	0.46	0.64	0.84	2.70	6873	870	6	0	9	0	0	logfile
✔	8J87	36062	2024-04-06	2023-05-01	3.42	4.18	3.44	3.5	0.002	0.54	0.0	0.04	10.98	0.00	2.196	7.33	0.00	3.7	96.3	0.0	-0.40	0.79	0.59	0.98	3.5	0.002	0.56	0.0	0.04	13.42	0.00	2.206	12.75	1.42	5.7	94.3	0.0	0.36	1.30	0.81	0.63	0.52	7846	954	2	0	0	0	0	logfile
✔	8oXB	17263	2024-04-07	2023-05-01	2.99	3.42	3.04	3.4	0.003	0.58	0.0	0.04	14.73	0.01	1.992	6.25	0.00	3.8	96.2	0.0	-0.48	0.61	0.76	3.61	3.4	0.003	0.60	0.0	0.04	16.01	0.00	2.002	8.14	1.92	3.3	96.7	0.0	0.45	0.44	0.60	0.77	3.05	11137	1363	6	0	8	10	0	logfile
✔	8J89	36064	2024-04-08	2023-05-01	2.31	3.12	2.39	2.9	0.003	0.46	0.0	0.04	10.98	0.00	2.215	5.85	0.15	3.6	96.4	0.0	0.51	0.82	0.89	4.79	2.9	0.002	0.44	0.0	0.04	13.16	0.00	2.062	6.34	0.38	3.4	96.6	0.0	1.20	1.88	0.81	0.88	4.03	12222	1502	2	0	0	0	0	logfile
✔	8oX4	17256	2024-04-07	2023-05-01	3.4	3.52	3.20	3.5	0.005	0.61	0.0	0.04	15.73	0.00	1.898	5.96	0.00	2.8	97.2	0.0	-0.65	0.60	0.76	1.89	3.5	0.003	0.55	0.0	0.04	16.36	0.00	1.994	7.97	1.91	2.8	97.2	0.0	-0.21	0.37	0.63	0.72	1.65	9757	1198	6	0	7	1	0	logfile
✔	8J85	36060	2024-04-12	2023-04-30	2.7	2.97	2.82	3.1	0.006	0.75	0.0	0.05	17.83	0.00	1.711	4.55	1.32	2.0	98.0	0.0	-0.55	0.71	0.85	3.31	3.0	0.004	0.61	0.0	0.05	17.81	0.00	1.563	5.92	3.77	2.4	97.6	0.0	-0.20	0.57	0.71	0.86	3.07	24376	3192	16	0	24	0	0	logfile
✔	8SoY	40671	2024-04-07	2023-04-30	2.85	2.95	2.81	3.0	0.005	0.73	0.0	0.05	12.14	0.01	2.374	1.86	0.00	2.3	97.7	0.0	-0.69	0.70	0.82	2.95	3.0	0.003	0.58	0.0	0.05	15.39	0.01	2.306	3.36	3.20	2.5	97.5	0.0	-0.06	0.27	0.70	0.83	1.63	10074	1422	6	0	0	0	0	logfile
✔	8J84	36059	2024-04-06	2023-04-30	3.3	4.04	3.29	3.9	0.002	0.58	0.0	0.04	17.27	0.00	2.166	15.78	4.31	5.6	94.4	0.0	-1.01	0.80	0.77	1.33	3.9	0.003	0.60	0.0	0.04	17.53	0.00	2.117	17.39	6.53	6.3	93.7	0.0	-1.06	0.36	0.80	0.77	1.12	7448	906	2	0	0	0	0	logfile
✔	8SoR	40669	2024-04-14	2023-04-29	3.96	3.57	—	3.5	0.004	0.61	1.0	0.04	14.39	0.00	1.903	7.61	0.11	4.7	95.2	0.1	-0.05	0.75	0.73	2.16	3.5	0.003	0.54	0.0	0.04	15.08	0.00	1.878	7.79	1.13	4.8	95.2	0.1	0.61	0.32	0.75	0.73	2.02	32094	1986	4	0	1	0	16046	logfile
✔	8oWN	17240	2024-04-10	2023-04-28	3.26	3.05	3.28	3.2	0.005	0.59	0.0	0.04	14.02	0.00	2.309	6.64	0.00	3.4	96.6	0.0	0.78	0.75	0.87	3.17	3.2	0.003	0.49	0.0	0.04	15.76	0.00	2.302	5.79	2.23	2.5	97.5	0.0	1.74	1.03	0.77	0.89	2.72	18804	2460	12	0	6	0	0	logfile
✔	8Soi	40658	2024-04-10	2023-04-28	4.2	3.78	—	3.6	0.003	0.60	0.0	0.04	15.47	0.00	2.090	9.52	0.09	3.2	96.7	0.1	1.61	0.66	0.64	—	3.6	0.003	0.54	0.0	0.03	14.19	0.00	2.031	9.18	0.09	3.6	96.3	0.2	1.88	0.53	0.66	0.63	—	20708	1276	4	0	0	0	10465	logfile
✔	8J7Y	36053	2024-04-07	2023-04-28	3.4	3.79	3.40	3.7	0.002	0.50	0.0	0.04	13.14	0.00	1.914	7.04	0.16	3.1	96.9	0.0	1.40	0.75	0.80	1.82	3.7	0.003	0.65	0.0	0.04	15.11	0.00	2.113	9.60	1.30	3.5	96.5	0.0	1.24	0.69	0.78	0.88	2.57	11008	1426	8	0	2	0	0	logfile
✔	8SoJ	40659	2024-04-15	2023-04-28	3.8	3.95	3.72	3.8	0.003	0.64	0.0	0.04	12.26	0.01	2.280	1.74	0.52	5.0	94.7	0.2	-2.25	0.78	0.77	2.05	3.8	0.005	0.64	0.0	0.04	14.03	0.00	1.972	6.70	1.35	5.5	94.5	0.0	-1.08	0.80	0.78	0.77	2.04	34490	2195	6	0	2	0	17267	logfile
✔	8So9	40650	2024-04-12	2023-04-28	3.03	3.34	3.06	3.3	0.004	0.60	0.0	0.04	12.34	0.01	2.081	2.52	2.79	5.6	94.2	0.2	-1.77	0.55	0.60	2.78	3.3	0.003	0.53	0.0	0.04	14.53	0.00	1.973	3.01	1.84	3.3	96.7	0.0	0.72	2.55	0.75	0.84	2.88	24636	1523	2	0	0	0	12386	logfile
✔	8J80	36055	2024-04-07	2023-04-28	2.68	2.84	2.75	2.8	0.005	0.73	0.0	0.05	17.01	0.01	1.989	6.76	3.05	3.5	96.5	0.0	0.48	0.53	0.72	2.53	2.8	0.003	0.60	0.0	0.04	17.24	0.00	2.117	7.84	1.77	2.7	97.3	0.0	1.75	0.48	0.66	0.72	2.79	11172	1444	7	0	1	0	0	logfile
✔	8SNX	40641	2024-04-08	2023-04-28	3.4	3.30	3.34	3.3	0.003	0.57	0.0	0.04	15.10	0.00	2.202	10.24	0.33	3.0	97.0	0.0	1.44	0.71	0.84	2.87	3.3	0.006	0.63	0.0	0.04	16.46	0.00	2.077	11.36	2.74	3.9	96.1	0.0	1.13	1.11	0.73	0.87	2.59	13741	1675	6	10	0	0	0	logfile

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