Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SPo	40680	2024-04-14	2023-05-03	2.98	2.34	3.17	2.1	0.004	0.60	0.0	0.26	18.84	0.00	0.334	11.05	0.00	6.0	94.0	0.0	-1.15	0.46	0.30	0.19	1.6	0.004	0.72	0.0	0.04	18.88	0.00	1.817	12.21	2.22	6.6	93.4	0.0	-1.13	1.34	0.57	0.49	1.24	31307	3428	22	154	6	0	0	logfile
✔	8J9K	36110	2024-04-05	2023-05-03	3.5	3.73	3.69	3.9	0.004	0.76	0.0	0.05	15.32	0.00	2.247	7.50	0.95	8.8	91.2	0.0	-2.39	0.76	0.79	2.35	3.9	0.004	0.67	0.0	0.04	16.03	0.00	2.215	10.40	5.24	6.4	93.5	0.2	-1.58	1.31	0.77	0.80	2.22	4284	590	3	0	0	0	0	logfile
✔	8J8R	36078	2024-04-08	2023-05-02	2.9	3.08	2.99	3.1	0.004	0.64	0.0	0.04	15.50	0.00	2.199	6.24	2.26	4.0	96.0	0.0	0.97	0.73	0.82	3.14	3.1	0.003	0.57	0.0	0.04	16.16	0.00	2.168	6.96	4.39	4.3	95.7	0.0	0.56	0.28	0.74	0.83	2.91	13424	1733	12	0	0	0	0	logfile
✔	8J8V	36081	2024-04-07	2023-05-02	3.22	3.39	3.26	3.4	0.005	0.72	0.0	0.05	13.27	0.00	2.228	4.92	0.98	5.1	94.9	0.0	0.23	0.76	0.81	3.25	3.4	0.003	0.90	1.0	0.05	14.41	0.00	2.189	6.20	1.46	5.2	94.8	0.0	0.32	1.14	0.79	0.84	3.09	9437	1205	8	0	0	0	0	logfile
✔	8J8Z	36082	2024-04-06	2023-05-02	3.4	3.65	3.51	3.7	0.006	0.73	0.0	0.05	14.13	0.00	2.118	7.54	0.86	6.7	93.3	0.0	-0.49	0.78	0.81	3.58	3.7	0.003	0.63	0.0	0.04	15.23	0.00	2.227	8.93	2.69	4.5	95.5	0.0	0.21	0.40	0.78	0.81	2.31	8722	1142	8	0	0	0	0	logfile
✔	8oXo	17266	2024-04-11	2023-05-02	3.0	3.84	3.29	3.6	0.003	0.51	0.0	0.04	14.35	0.00	2.081	7.05	0.00	2.2	97.8	0.0	1.76	0.79	0.85	2.01	3.6	0.003	0.68	0.0	0.04	16.05	0.00	1.949	9.50	1.87	2.5	97.5	0.0	2.21	1.04	0.80	0.87	1.58	23986	2966	6	0	6	0	0	logfile
✔	8oXQ	17268	2024-04-12	2023-05-02	2.5	3.51	2.59	3.1	0.003	0.44	0.0	0.04	13.91	0.00	2.094	5.38	0.00	1.6	98.4	0.0	2.91	0.81	0.87	2.58	3.2	0.005	0.62	0.0	0.04	15.89	0.00	2.104	8.00	1.47	2.1	97.9	0.0	2.78	1.40	0.82	0.89	2.71	25078	3100	4	0	6	0	0	logfile
✔	8SPB	40678	2024-04-06	2023-05-02	3.2	3.73	1.22	3.6	0.003	0.73	0.0	0.05	17.30	0.00	2.227	10.41	1.18	6.9	93.1	0.0	-1.37	0.55	0.77	1.49	3.6	0.003	0.65	0.0	0.04	18.02	0.00	2.118	13.18	4.74	6.7	93.2	0.1	-1.20	0.99	0.48	0.75	0.99	6726	828	6	0	0	0	0	logfile
✔	8J97	36090	2024-04-05	2023-05-02	3.2	2.37	3.18	1.6	0.007	0.92	1.0	0.05	13.20	0.01	2.266	9.42	0.28	5.8	94.2	0.0	-1.02	0.73	0.71	3.94	1.6	0.004	0.65	0.0	0.05	14.39	0.00	2.201	11.06	2.54	5.4	94.6	0.0	-0.42	0.42	0.73	0.71	2.75	3863	544	4	0	0	0	0	logfile
✔	8SP8	40676	2024-04-17	2023-05-02	2.79	3.19	3.00	3.2	0.014	1.17	0.0	0.06	16.36	0.01	2.073	2.78	0.00	8.2	91.8	0.0	-4.84	0.53	0.77	4.48	3.2	0.003	0.63	0.0	0.04	16.06	0.00	2.142	13.17	1.79	7.2	92.8	0.0	0.25	1.39	0.51	0.80	3.50	40942	2448	8	0	50	0	19860	logfile
✔	8SP0	40672	2024-04-09	2023-05-01	3.33	2.29	3.41	2.1	0.003	0.53	0.0	0.04	17.61	0.00	1.710	7.29	0.00	5.6	94.4	0.0	-0.53	0.70	0.67	2.53	2.1	0.003	0.55	0.0	0.04	19.01	0.00	2.002	8.27	1.95	5.4	94.6	0.0	-0.39	0.40	0.71	0.69	1.94	16270	1776	10	82	2	0	0	logfile
✔	8J8C	36067	2024-04-07	2023-05-01	2.69	3.48	2.80	3.3	0.002	0.42	0.0	0.04	8.08	0.00	2.250	4.72	0.48	4.6	95.4	0.0	0.89	0.81	0.87	4.37	3.3	0.003	0.54	0.0	0.04	11.75	0.00	2.044	8.11	0.88	5.1	94.9	0.0	0.92	1.29	0.80	0.86	3.79	11650	1434	2	0	0	0	0	logfile
✔	8SP3	40673	2024-04-09	2023-05-01	3.52	2.50	3.58	2.2	0.003	0.62	1.0	0.04	17.32	0.01	1.632	8.08	0.00	5.1	94.9	0.0	-0.38	0.69	0.66	1.58	2.2	0.004	0.66	0.0	0.04	19.01	0.00	1.964	10.54	3.40	6.5	93.5	0.0	-0.54	0.63	0.70	0.67	1.31	16270	1776	10	82	2	0	0	logfile
✔	8oX6	17258	2024-04-06	2023-05-01	2.39	2.99	2.43	2.9	0.004	1.20	0.0	0.04	14.22	0.00	1.906	7.95	0.00	5.3	94.7	0.0	-0.40	0.62	0.74	2.74	2.9	0.004	0.95	0.0	0.04	15.74	0.00	2.052	14.14	3.03	5.5	94.5	0.0	-0.24	0.47	0.54	0.70	2.70	7359	903	6	0	7	1	0	logfile
✔	8J88	36063	2024-04-06	2023-05-01	3.49	4.36	3.55	3.5	0.002	0.56	0.0	0.04	11.87	0.00	2.205	5.61	0.00	4.8	95.2	0.0	-0.95	0.81	0.59	0.05	3.5	0.002	0.55	0.0	0.04	13.96	0.00	2.179	9.69	0.59	5.4	94.6	0.0	0.27	1.05	0.82	0.62	-0.01	7846	954	2	0	0	0	0	logfile
✔	8oX7	17259	2024-04-07	2023-05-01	2.56	2.97	2.59	2.9	0.004	0.56	0.0	0.04	14.91	0.00	1.947	5.68	0.08	3.7	96.3	0.0	-0.45	0.68	0.79	3.76	2.9	0.002	0.52	0.0	0.04	16.91	0.00	2.000	7.94	2.29	2.4	97.6	0.0	0.26	0.37	0.65	0.79	3.07	11755	1440	5	0	7	1	0	logfile
✔	8J8H	36070	2024-04-06	2023-05-01	3.4	4.16	3.46	3.9	0.004	0.69	0.0	0.05	20.21	0.00	1.914	16.35	0.61	8.5	91.5	0.0	-1.54	0.82	0.77	1.20	3.9	0.003	0.70	0.0	0.05	20.51	0.00	2.086	16.28	4.25	7.7	92.3	0.0	-1.59	0.41	0.82	0.76	1.59	6868	738	5	39	1	0	0	logfile
✔	8oXC	17264	2024-04-07	2023-05-01	2.58	3.03	2.67	3.0	0.003	0.54	0.0	0.04	15.40	0.00	1.911	6.07	0.08	4.0	96.0	0.0	-0.64	0.59	0.77	3.56	3.0	0.004	1.02	0.0	0.04	16.80	0.00	2.039	9.94	1.84	3.0	97.0	0.0	0.15	0.74	0.58	0.78	2.87	11143	1363	6	0	8	11	0	logfile
✔	8oX8	17260	2024-04-07	2023-05-01	2.98	3.37	3.05	3.3	0.005	0.55	0.0	0.04	14.91	0.00	1.913	6.55	0.00	4.3	95.7	0.0	-0.95	0.62	0.78	4.08	3.3	0.003	0.56	0.0	0.04	16.15	0.00	1.951	7.06	1.33	2.6	97.4	0.0	0.38	0.38	0.63	0.81	3.07	11872	1452	6	0	7	1	0	logfile
✔	8J8A	36065	2024-04-08	2023-05-01	2.51	3.34	2.59	3.1	0.003	0.50	0.0	0.04	12.92	0.00	2.197	7.41	0.08	2.0	98.0	0.0	1.03	0.81	0.85	3.53	3.1	0.002	0.53	0.0	0.04	14.61	0.00	2.137	8.02	0.91	2.8	97.2	0.0	1.06	1.93	0.80	0.85	3.61	12222	1502	2	0	0	0	0	logfile

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