Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SR5	40720	2024-04-15	2023-05-05	3.22	3.44	3.27	3.4	0.006	0.78	0.0	0.05	13.26	0.00	1.949	13.27	0.77	5.8	93.8	0.4	0.25	0.64	0.82	2.68	3.4	0.003	0.59	0.0	0.04	14.99	0.00	2.043	10.10	1.54	5.0	95.0	0.0	0.57	0.76	0.69	0.88	2.56	18588	2310	12	0	6	0	0	logfile
✔	8J9X	36118	2024-04-08	2023-05-05	3.0	4.16	3.04	3.3	0.003	0.59	0.0	0.04	17.55	0.00	2.224	10.24	0.29	4.8	95.2	0.0	0.43	0.92	0.84	1.64	3.4	0.003	0.61	0.0	0.04	18.75	0.00	2.055	13.36	0.81	6.2	93.8	0.0	0.49	0.58	0.93	0.89	2.41	13890	1556	10	60	4	0	0	logfile
✔	8JA3	36124	2024-04-06	2023-05-05	3.94	2.74	3.93	2.1	0.007	0.94	0.0	0.05	14.00	0.01	2.242	12.70	2.26	7.3	92.7	0.0	-1.46	0.65	0.59	1.74	2.1	0.003	0.69	0.0	0.04	15.19	0.00	2.233	12.55	6.25	6.3	93.7	0.0	-1.01	0.60	0.66	0.60	1.22	7130	1053	8	0	0	0	0	logfile
✔	8SR0	40716	2024-04-07	2023-05-05	3.53	3.69	3.52	3.6	0.005	0.80	2.0	0.05	14.06	0.01	2.139	9.79	0.34	8.0	92.0	0.0	-2.68	0.70	0.72	2.32	3.6	0.004	0.64	0.0	0.04	14.67	0.00	2.157	9.01	1.53	10.7	89.3	0.0	-2.28	0.46	0.71	0.73	2.28	11414	816	8	0	2	0	5426	logfile
✔	8SRo	40736	2024-04-05	2023-05-05	3.3	3.43	3.26	3.4	0.003	0.56	0.0	0.03	26.26	0.02	2.348	8.41	0.90	5.3	94.7	0.0	-1.78	0.66	0.78	3.49	3.4	0.004	0.59	0.0	0.03	25.89	0.00	2.372	7.58	3.14	7.7	92.3	0.0	-0.84	0.91	0.65	0.79	2.78	4132	345	8	72	0	0	0	logfile
✔	8SR4	40719	2024-04-17	2023-05-05	3.12	3.59	3.15	3.4	0.005	0.78	0.0	0.05	14.00	0.00	1.413	19.10	2.19	7.2	92.1	0.7	0.06	0.65	0.76	2.76	3.4	0.004	0.76	1.0	0.04	15.54	0.00	1.889	11.77	1.87	5.3	94.6	0.1	0.84	0.82	0.73	0.85	2.71	20907	2577	15	0	9	0	0	logfile
✔	8SQU	40713	2024-04-06	2023-05-04	3.28	4.37	3.34	4.0	0.003	0.63	0.0	0.05	18.10	0.00	1.967	11.66	0.00	6.3	93.7	0.0	-0.59	0.75	0.62	1.04	4.0	0.003	0.68	0.0	0.04	19.80	0.00	1.979	13.97	1.07	5.3	94.7	0.0	0.08	2.13	0.78	0.68	1.24	7761	841	5	41	1	0	0	logfile
✔	8SQ9	40699	2024-04-12	2023-05-04	2.9	3.13	—	3.1	0.007	0.55	0.0	0.04	15.02	0.00	1.877	4.53	2.38	4.7	95.2	0.1	0.07	0.57	0.72	3.98	3.1	0.003	0.47	0.0	0.04	16.33	0.00	1.920	4.45	2.14	4.3	95.7	0.1	0.44	0.31	0.65	0.79	3.47	25412	1469	13	67	8	242	12087	logfile
✔	8J9o	36112	2024-04-06	2023-05-04	3.4	2.47	3.47	2.1	0.003	0.75	0.0	0.04	13.17	0.01	2.192	7.33	0.00	5.6	94.4	0.0	-1.72	0.73	0.72	2.33	2.1	0.003	0.67	0.0	0.04	15.80	0.00	2.117	12.52	5.42	6.4	93.6	0.0	-0.87	0.93	0.75	0.75	1.98	7441	999	4	0	0	0	0	logfile
✔	8SQJ	40707	2024-04-12	2023-05-04	3.06	3.29	3.09	3.3	0.006	0.51	0.0	0.04	16.18	0.00	1.600	3.63	3.69	3.9	96.1	0.0	-0.63	0.69	0.83	4.24	3.3	0.002	0.48	0.0	0.04	17.11	0.00	1.992	3.51	2.67	3.1	96.9	0.0	0.31	0.60	0.71	0.84	3.85	26044	1486	16	85	3	139	12389	logfile
✔	8J9N	36111	2024-04-06	2023-05-04	3.5	2.42	3.55	2.2	0.004	0.87	0.0	0.05	13.71	0.01	2.245	6.81	0.00	6.0	94.0	0.0	-1.50	0.74	0.72	2.30	2.2	0.004	0.71	0.0	0.04	16.12	0.00	2.087	11.87	3.78	6.3	93.7	0.0	-0.58	0.39	0.74	0.72	1.99	8483	1107	5	0	0	0	0	logfile
✔	8J9P	36114	2024-04-09	2023-05-04	3.4	4.20	3.32	3.8	0.003	0.62	0.0	0.04	19.68	0.00	2.020	10.67	0.26	7.0	93.0	0.0	-1.61	0.86	0.82	1.76	3.8	0.003	0.63	0.0	0.04	19.84	0.00	2.034	10.51	4.69	7.6	92.4	0.0	-1.40	0.33	0.86	0.82	1.60	16013	1743	10	83	2	0	0	logfile
✔	8SQN	40711	2024-04-06	2023-05-04	3.89	4.20	3.98	4.1	0.003	0.60	0.0	0.05	15.80	0.01	1.927	12.10	0.29	4.5	95.5	0.0	-0.99	0.65	0.72	1.62	4.1	0.005	0.68	0.0	0.05	16.14	0.00	1.887	14.07	4.16	4.9	95.1	0.0	-1.14	1.28	0.67	0.73	1.86	56304	3677	18	0	9	0	27807	logfile
✔	8SQK	40708	2024-04-12	2023-05-04	3.01	3.26	3.06	3.3	0.008	0.61	2.0	0.04	16.12	0.00	1.601	4.33	2.05	4.1	95.9	0.0	-0.91	0.68	0.82	3.98	3.3	0.002	0.47	0.0	0.04	16.29	0.00	1.856	3.62	2.52	3.0	97.0	0.0	0.03	0.30	0.69	0.84	3.62	25550	1487	14	70	3	131	12205	logfile
✔	8SPW	40688	2024-04-11	2023-05-03	3.5	3.84	3.66	3.9	0.003	0.61	0.0	0.04	13.74	0.00	1.846	6.47	2.11	2.6	97.4	0.0	-0.04	0.70	0.68	1.14	3.9	0.005	0.78	0.0	0.05	16.89	0.01	1.834	13.55	4.18	7.2	92.8	0.0	-1.16	0.87	0.72	0.74	1.02	21960	2835	11	0	11	0	0	logfile
✔	8SPS	40683	2024-04-09	2023-05-03	3.0	3.64	3.06	3.4	0.008	0.88	3.0	0.05	27.01	0.01	0.574	10.67	0.53	4.6	95.3	0.1	-0.87	0.84	0.82	2.70	3.4	0.003	0.66	0.0	0.04	26.70	0.00	2.188	10.66	2.22	4.1	95.9	0.0	1.73	0.70	0.84	0.85	2.52	16515	1334	14	294	0	0	0	logfile
✔	8SPU	40686	2024-04-09	2023-05-03	2.8	3.51	2.94	3.2	0.008	0.91	3.0	0.05	27.15	0.01	1.874	10.56	0.47	4.4	95.6	0.1	-0.88	0.87	0.86	3.01	3.2	0.006	0.65	0.0	0.04	27.17	0.00	2.141	8.34	2.98	4.5	95.5	0.0	1.88	1.63	0.86	0.88	2.89	16181	1285	13	298	0	0	0	logfile
✔	8J9G	36095	2024-04-06	2023-05-03	3.5	4.24	3.47	4.0	0.003	0.52	0.0	0.04	19.06	0.00	1.995	16.89	0.25	5.7	94.3	0.0	-1.46	0.82	0.74	1.02	4.0	0.003	0.69	0.0	0.05	19.69	0.00	1.987	18.76	3.61	5.7	94.3	0.0	-1.28	0.50	0.82	0.73	1.16	7868	898	5	24	1	0	0	logfile
✔	8SPo	40680	2024-04-14	2023-05-03	2.98	2.34	3.17	2.1	0.004	0.60	0.0	0.26	18.84	0.00	0.334	11.05	0.00	6.0	94.0	0.0	-1.15	0.46	0.30	0.19	1.6	0.004	0.72	0.0	0.04	18.88	0.00	1.817	12.21	2.22	6.6	93.4	0.0	-1.13	1.34	0.57	0.49	1.24	31307	3428	22	154	6	0	0	logfile
✔	8J9K	36110	2024-04-05	2023-05-03	3.5	3.73	3.69	3.9	0.004	0.76	0.0	0.05	15.32	0.00	2.247	7.50	0.95	8.8	91.2	0.0	-2.39	0.76	0.79	2.35	3.9	0.004	0.67	0.0	0.04	16.03	0.00	2.215	10.40	5.24	6.4	93.5	0.2	-1.58	1.31	0.77	0.80	2.22	4284	590	3	0	0	0	0	logfile

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