Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SS8	40747	2024-04-13	2023-05-08	2.81	3.02	2.88	3.0	0.016	1.43	0.0	0.18	15.64	0.01	2.255	3.89	1.33	7.1	92.2	0.7	-4.85	0.72	0.81	3.89	3.0	0.003	0.74	0.0	0.05	16.37	0.00	2.188	8.60	2.54	5.6	94.3	0.2	0.12	1.13	0.74	0.83	3.40	28487	3514	12	0	26	11	0	logfile
✔	8oZ6	17299	2024-04-15	2023-05-08	3.97	4.30	4.11	4.0	0.005	0.73	0.0	0.04	16.73	0.01	2.093	14.91	0.00	5.0	94.7	0.3	-1.10	0.67	0.58	0.41	4.0	0.003	0.74	0.0	0.04	18.74	0.00	2.016	23.80	2.66	6.6	93.2	0.2	-1.27	1.45	0.69	0.64	0.26	32004	3564	16	136	0	0	0	logfile
✔	8SS9	40748	2024-04-09	2023-05-08	2.72	2.88	2.72	2.9	0.014	1.36	0.0	0.23	17.97	0.01	2.329	4.43	0.36	3.9	95.8	0.3	-4.92	0.67	0.78	3.56	2.9	0.004	0.82	0.0	0.06	18.38	0.00	2.039	7.98	2.38	4.6	95.4	0.0	0.49	2.84	0.70	0.82	3.37	16319	1986	12	0	26	15	0	logfile
✔	8JBF	36144	2024-04-06	2023-05-08	3.0	2.24	2.87	2.0	0.007	0.86	0.0	0.06	12.83	0.01	2.214	4.23	0.22	5.7	94.3	0.0	-5.19	0.78	0.78	4.30	2.0	0.003	0.64	0.0	0.04	15.32	0.00	2.148	9.39	2.19	4.0	96.0	0.0	-0.53	0.43	0.78	0.79	3.49	8784	1145	6	0	0	0	0	logfile
✔	8JAY	36138	2024-04-14	2023-05-07	4.2	4.39	4.16	4.3	0.003	0.65	0.0	0.04	17.45	0.00	1.999	13.83	0.00	7.6	92.4	0.0	-1.79	0.76	0.75	—	4.2	0.003	0.64	0.0	0.04	17.46	0.00	1.968	13.52	0.03	7.2	92.7	0.1	-1.67	0.35	0.76	0.75	—	31982	3481	20	166	4	0	0	logfile
✔	8JAU	36134	2024-04-10	2023-05-07	3.22	3.52	3.25	3.6	0.004	0.52	0.0	0.04	14.40	0.00	2.183	7.18	0.05	4.0	96.0	0.0	-0.99	0.70	0.75	3.31	3.5	0.004	0.54	0.0	0.04	16.34	0.00	2.183	10.22	1.78	4.7	95.3	0.0	0.36	0.40	0.71	0.85	2.83	17064	2096	11	0	1	0	0	logfile
✔	8JAX	36137	2024-04-14	2023-05-07	3.27	3.67	3.22	3.4	0.005	0.83	0.0	0.04	18.67	0.00	1.139	7.77	0.36	2.4	97.4	0.2	3.04	0.82	0.90	1.34	3.4	0.004	0.63	0.0	0.03	18.98	0.00	2.074	7.47	3.23	2.4	97.4	0.2	3.73	0.28	0.83	0.91	1.27	31889	3858	48	0	36	0	0	logfile
✔	8JB0	36139	2024-04-14	2023-05-07	4.2	4.12	4.27	3.8	0.003	0.62	0.0	0.04	16.01	0.00	2.196	13.62	0.09	2.8	97.0	0.2	2.31	0.76	0.79	—	3.8	0.004	0.62	0.0	0.04	16.48	0.00	2.097	12.51	0.06	3.3	96.6	0.2	2.23	0.52	0.77	0.81	—	31387	3858	48	0	36	0	0	logfile
✔	8JAR	36132	2024-04-10	2023-05-07	3.3	3.63	3.32	3.6	0.004	0.54	0.0	0.04	14.40	0.00	2.172	7.43	0.00	3.4	96.6	0.0	-0.87	0.74	0.81	2.67	3.6	0.004	0.55	0.0	0.04	16.50	0.00	2.129	11.33	1.70	3.5	96.5	0.0	0.44	0.92	0.74	0.85	2.28	16841	2071	11	0	1	0	0	logfile
✔	8JAN	36130	2024-04-11	2023-05-06	3.3	3.48	3.09	3.4	0.003	0.53	0.0	0.04	12.83	0.00	2.199	4.25	0.00	4.2	95.8	0.0	-0.26	0.72	0.89	3.06	3.4	0.003	0.53	1.0	0.04	14.24	0.00	2.177	4.54	0.69	4.4	95.6	0.0	-0.58	0.23	0.73	0.91	2.83	75114	9834	30	0	0	0	0	logfile
✔	8JAQ	36131	2024-04-17	2023-05-06	3.26	3.56	3.32	3.5	0.003	0.55	0.0	0.04	14.20	0.00	2.028	9.03	0.07	3.6	96.4	0.0	-1.58	0.72	0.74	2.88	3.5	0.003	0.57	0.0	0.04	16.41	0.00	2.024	12.96	1.59	4.1	95.9	0.0	0.20	0.94	0.75	0.79	2.08	39233	4833	26	0	8	0	0	logfile
✔	8JAL	36129	2024-04-10	2023-05-06	3.3	3.48	3.27	3.4	0.003	0.63	0.0	0.04	14.49	0.00	2.255	7.12	0.00	3.2	96.8	0.0	-1.29	0.71	0.77	2.72	3.4	0.004	0.58	0.0	0.04	16.50	0.00	2.200	10.85	1.44	3.9	96.1	0.0	0.80	0.47	0.77	0.87	2.19	17226	2115	11	0	1	0	0	logfile
✔	8SRo	40736	2024-04-05	2023-05-05	3.3	3.43	3.26	3.4	0.003	0.56	0.0	0.03	26.26	0.02	2.348	8.41	0.90	5.3	94.7	0.0	-1.78	0.66	0.78	3.49	3.4	0.004	0.59	0.0	0.03	25.89	0.00	2.372	7.58	3.14	7.7	92.3	0.0	-0.84	0.91	0.65	0.79	2.78	4132	345	8	72	0	0	0	logfile
✔	8JA3	36124	2024-04-06	2023-05-05	3.94	2.74	3.93	2.1	0.007	0.94	0.0	0.05	14.00	0.01	2.242	12.70	2.26	7.3	92.7	0.0	-1.46	0.65	0.59	1.74	2.1	0.003	0.69	0.0	0.04	15.19	0.00	2.233	12.55	6.25	6.3	93.7	0.0	-1.01	0.60	0.66	0.60	1.22	7130	1053	8	0	0	0	0	logfile
✔	8SR5	40720	2024-04-15	2023-05-05	3.22	3.44	3.27	3.4	0.006	0.78	0.0	0.05	13.26	0.00	1.949	13.27	0.77	5.8	93.8	0.4	0.25	0.64	0.82	2.68	3.4	0.003	0.59	0.0	0.04	14.99	0.00	2.043	10.10	1.54	5.0	95.0	0.0	0.57	0.76	0.69	0.88	2.56	18588	2310	12	0	6	0	0	logfile
✔	8SR0	40716	2024-04-07	2023-05-05	3.53	3.69	3.52	3.6	0.005	0.80	2.0	0.05	14.06	0.01	2.139	9.79	0.34	8.0	92.0	0.0	-2.68	0.70	0.72	2.32	3.6	0.004	0.64	0.0	0.04	14.67	0.00	2.157	9.01	1.53	10.7	89.3	0.0	-2.28	0.46	0.71	0.73	2.28	11414	816	8	0	2	0	5426	logfile
✔	8JA7	36125	2024-04-08	2023-05-05	3.02	3.83	3.16	3.5	0.004	0.63	0.0	0.04	13.42	0.00	2.158	15.41	0.00	4.8	95.2	0.0	-3.10	0.71	0.86	2.48	3.5	0.003	0.62	0.0	0.04	14.94	0.00	2.142	13.48	1.97	4.7	95.3	0.0	-0.48	0.94	0.69	0.87	2.01	13601	1784	6	0	2	0	0	logfile
✔	8J9Z	36120	2024-04-08	2023-05-05	3.13	3.40	3.17	3.4	0.002	0.41	0.0	0.04	16.68	0.00	2.177	4.52	0.15	2.2	97.8	0.0	1.31	0.68	0.81	3.00	3.4	0.003	0.46	0.0	0.04	17.10	0.00	2.140	5.30	2.60	1.8	98.2	0.0	1.02	0.27	0.72	0.85	2.88	12154	1494	2	0	0	0	0	logfile
✔	8J9Y	36119	2024-04-08	2023-05-05	3.16	3.43	3.20	3.5	0.002	0.50	0.0	0.04	15.11	0.00	2.167	5.43	0.76	2.2	97.8	0.0	0.63	0.70	0.82	2.44	3.5	0.003	0.47	0.0	0.04	15.71	0.00	2.176	6.00	2.37	2.2	97.8	0.0	1.41	1.01	0.71	0.84	2.92	12154	1494	2	0	0	0	0	logfile
✔	8JA0	36123	2024-04-08	2023-05-05	3.52	3.71	3.53	3.6	0.002	0.57	0.0	0.04	20.78	0.00	2.187	9.41	0.00	5.6	93.7	0.6	-0.68	0.73	0.79	1.35	3.6	0.003	0.59	0.0	0.04	20.57	0.00	2.179	9.84	2.51	6.3	93.4	0.4	-0.32	0.31	0.73	0.80	1.77	11291	1114	3	115	0	0	0	logfile

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