Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SU9	40762	2024-04-08	2023-05-11	2.83	3.05	2.96	3.1	0.003	0.56	1.0	0.04	14.79	0.00	2.013	2.16	0.00	4.0	96.0	0.0	-0.97	0.70	0.81	3.05	3.1	0.004	0.66	0.0	0.04	17.15	0.00	1.958	2.94	2.18	5.3	94.7	0.0	-1.33	1.63	0.70	0.84	2.87	65385	8134	35	0	22	0	0	logfile
✔	8JCH	36162	2024-04-17	2023-05-11	2.7	3.42	2.84	3.2	0.002	0.54	0.0	0.04	18.22	0.00	2.031	8.60	2.29	4.3	95.7	0.0	0.88	0.81	0.82	1.90	3.2	0.003	0.59	0.0	0.04	18.25	0.00	2.017	8.90	2.40	4.6	95.4	0.0	0.62	0.45	0.79	0.82	2.06	42732	5119	26	99	11	0	0	logfile
✔	8SUB	40763	2024-04-07	2023-05-11	2.89	3.11	3.05	3.1	0.005	0.70	0.0	0.05	15.08	0.00	1.948	2.94	0.00	5.8	94.2	0.0	-1.48	0.71	0.84	3.31	3.2	0.002	0.59	1.0	0.04	16.93	0.00	2.008	3.79	1.37	4.1	95.9	0.0	-0.50	1.27	0.71	0.84	2.54	61226	7611	34	0	22	0	0	logfile
✔	8STE	40759	2024-04-05	2023-05-10	3.34	3.55	3.29	3.5	0.005	0.69	0.0	0.04	14.38	0.00	1.979	10.65	0.00	6.2	93.8	0.0	-0.32	0.57	0.80	2.57	3.5	0.003	0.64	0.0	0.04	16.23	0.00	2.281	9.04	2.07	5.4	94.6	0.0	-0.10	1.18	0.57	0.83	2.22	5816	712	4	0	2	0	0	logfile
✔	8oZi	17310	2024-04-15	2023-05-09	3.22	3.45	3.30	3.4	0.005	0.77	0.0	0.14	17.64	0.00	2.121	10.71	0.00	4.8	94.7	0.5	-0.91	0.70	0.77	1.97	3.4	0.004	0.62	0.0	0.04	18.54	0.00	2.123	12.71	1.85	5.5	94.3	0.2	-0.64	0.47	0.70	0.80	2.07	32092	3564	18	136	2	0	0	logfile
✔	8oZF	17307	2024-04-15	2023-05-09	3.73	4.14	3.95	3.8	0.006	0.75	0.0	0.04	16.97	0.01	2.112	13.75	0.00	4.9	94.8	0.4	-0.84	0.72	0.71	0.70	3.9	0.003	0.68	0.0	0.04	18.46	0.00	2.160	15.11	1.60	5.2	94.5	0.3	-0.80	0.68	0.73	0.73	0.69	32076	3564	18	136	2	0	0	logfile
✔	8oZC	17304	2024-04-06	2023-05-09	4.0	4.25	4.05	4.0	0.002	0.62	0.0	0.04	13.40	0.00	2.124	14.20	0.00	6.7	92.9	0.3	-1.97	0.70	0.62	—	4.1	0.003	0.76	0.0	0.05	16.06	0.00	2.095	20.69	2.69	8.0	91.7	0.2	-2.28	1.27	0.72	0.66	—	7478	913	2	0	0	0	0	logfile
✔	8oZG	17308	2024-04-15	2023-05-09	3.37	3.80	3.75	3.8	0.006	0.73	0.0	0.04	17.23	0.01	2.177	12.91	0.03	5.2	94.5	0.3	-0.80	0.67	0.76	1.57	3.8	0.003	0.62	0.0	0.04	18.37	0.00	2.067	13.77	1.66	5.2	94.6	0.1	-0.46	1.32	0.67	0.78	1.86	32077	3564	18	136	3	0	0	logfile
✔	8oZE	17306	2024-04-08	2023-05-09	2.91	3.20	3.05	3.2	0.003	0.55	0.0	0.04	17.98	0.00	2.128	9.17	0.00	6.7	93.0	0.3	-0.72	0.72	0.77	2.73	3.2	0.003	0.59	0.0	0.04	19.23	0.00	2.248	10.40	1.39	5.2	94.5	0.3	-0.08	1.29	0.67	0.77	2.13	13434	1448	8	74	0	0	0	logfile
✔	8P00	17323	2024-04-09	2023-05-09	3.8	4.04	3.91	4.1	0.002	0.57	0.0	0.04	17.07	0.00	2.353	7.65	0.06	4.6	95.4	0.0	-0.53	0.77	0.83	1.66	4.1	0.006	0.70	0.0	0.04	17.39	0.00	2.128	8.91	7.97	10.2	89.8	0.0	-0.66	0.33	0.77	0.84	2.20	16992	2376	8	0	0	0	0	logfile
✔	8oZD	17305	2024-04-09	2023-05-09	3.89	4.28	3.82	4.0	0.003	0.59	0.0	0.04	16.89	0.00	2.178	13.09	0.00	4.7	94.8	0.5	-0.29	0.77	0.74	0.95	4.0	0.003	0.69	0.0	0.04	18.40	0.00	2.123	17.24	2.50	5.2	94.5	0.3	-0.41	1.51	0.78	0.77	0.86	16001	1782	8	68	0	0	0	logfile
✔	8ST1	40754	2024-04-17	2023-05-09	3.41	3.57	3.39	3.5	0.004	0.53	0.0	0.04	15.27	0.00	1.920	5.42	0.00	3.9	96.1	0.0	-0.14	0.77	0.83	3.10	3.5	0.002	0.50	0.0	0.04	14.94	0.00	1.926	5.19	0.80	3.3	96.7	0.0	0.25	1.12	0.78	0.85	2.85	43923	2727	19	0	20	5	21833	logfile
✔	8P03	17329	2024-04-13	2023-05-09	3.04	3.16	3.12	3.2	0.008	1.21	18.0	0.06	22.16	0.02	1.556	6.66	6.25	9.2	90.8	0.1	-3.79	0.72	0.83	2.40	3.2	0.003	0.63	0.0	0.04	22.10	0.00	1.066	8.51	6.72	9.1	90.9	0.0	-1.87	0.45	0.72	0.85	2.10	86276	5900	44	1827	178	0	0	logfile
✔	8P09	17330	2024-04-13	2023-05-09	3.3	3.42	3.35	3.4	0.011	1.39	11.0	0.07	22.25	0.02	1.119	7.77	9.33	11.8	88.1	0.2	-4.21	0.76	0.84	2.06	3.4	0.006	0.71	0.0	0.04	21.96	0.01	1.035	9.79	5.90	9.5	90.5	0.0	-2.07	0.47	0.76	0.86	1.78	86284	5900	47	1825	230	0	0	logfile
✔	8JBF	36144	2024-04-06	2023-05-08	3.0	2.24	2.87	2.0	0.007	0.86	0.0	0.06	12.83	0.01	2.214	4.23	0.22	5.7	94.3	0.0	-5.19	0.78	0.78	4.30	2.0	0.003	0.64	0.0	0.04	15.32	0.00	2.148	9.39	2.19	4.0	96.0	0.0	-0.53	0.43	0.78	0.79	3.49	8784	1145	6	0	0	0	0	logfile
✔	8SS2	40741	2024-04-14	2023-05-08	3.58	3.90	3.68	3.9	0.025	1.64	0.0	0.36	18.88	0.01	2.176	7.42	0.80	15.0	84.3	0.7	-5.79	0.75	0.82	2.74	3.9	0.003	0.93	0.0	0.08	17.32	0.00	2.119	11.03	2.09	11.4	88.4	0.2	-1.73	1.43	0.74	0.82	1.82	31146	3802	12	0	35	0	0	logfile
✔	8SS5	40744	2024-04-09	2023-05-08	3.56	3.87	3.72	3.8	0.006	1.22	0.0	0.06	11.20	0.01	2.218	3.90	0.24	10.6	88.3	1.1	-5.78	0.57	0.74	2.01	3.8	0.006	0.79	0.0	0.05	15.22	0.01	2.129	12.48	2.43	12.3	87.4	0.4	-1.48	2.42	0.63	0.75	1.94	15637	1998	5	0	1	0	0	logfile
✔	8SS3	40742	2024-04-10	2023-05-08	3.21	3.40	3.30	3.4	0.047	1.90	0.0	0.69	28.24	0.01	2.123	11.20	0.52	7.6	91.7	0.7	-6.01	0.62	0.80	3.60	3.4	0.006	1.29	0.0	0.14	22.12	0.00	2.140	9.62	3.40	7.7	92.0	0.3	-0.28	1.30	0.67	0.88	3.35	19887	2280	12	0	65	0	0	logfile
✔	8SSA	40749	2024-04-14	2023-05-08	3.88	4.18	3.96	4.1	0.010	1.32	0.0	0.06	14.93	0.01	2.213	6.33	1.00	11.4	87.6	1.0	-5.19	0.70	0.77	2.06	4.1	0.004	0.78	0.0	0.04	16.24	0.00	2.060	17.53	2.40	10.2	89.6	0.2	-1.29	1.27	0.69	0.74	1.50	30888	3840	10	0	13	0	0	logfile
✔	8oZ6	17299	2024-04-15	2023-05-08	3.97	4.30	4.11	4.0	0.005	0.73	0.0	0.04	16.73	0.01	2.093	14.91	0.00	5.0	94.7	0.3	-1.10	0.67	0.58	0.41	4.0	0.003	0.74	0.0	0.04	18.74	0.00	2.016	23.80	2.66	6.6	93.2	0.2	-1.27	1.45	0.69	0.64	0.26	32004	3564	16	136	0	0	0	logfile

• ← previous
• Page 59 of 610
• next →