Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J19	35914	2024-04-06	2023-04-12	3.23	3.65	3.37	3.6	0.005	0.63	1.0	0.04	15.96	0.00	2.220	5.65	0.74	1.9	98.1	0.0	0.90	0.65	0.84	3.13	3.6	0.002	0.54	0.0	0.04	16.24	0.00	2.189	6.73	3.06	2.1	97.9	0.0	0.86	0.92	0.63	0.84	2.79	8801	1129	6	0	1	0	0	logfile
✔	8J1F	35921	2024-04-16	2023-04-12	3.62	4.10	3.63	4.0	0.006	0.70	4.0	0.04	14.75	0.00	1.913	13.86	0.00	6.4	93.4	0.2	-1.13	0.59	0.66	1.31	4.0	0.004	0.63	4.0	0.04	15.76	0.00	1.848	15.53	0.53	10.9	89.1	0.0	-0.98	0.53	0.60	0.68	1.78	38396	2348	8	0	4	0	19280	logfile
✔	8J1E	35920	2024-04-06	2023-04-12	3.84	3.91	3.88	3.9	0.004	0.79	0.0	0.05	14.02	0.01	2.310	5.99	0.00	1.9	98.1	0.0	0.90	0.70	0.82	2.42	3.9	0.003	0.59	0.0	0.04	15.37	0.00	2.159	5.12	1.03	2.3	97.7	0.0	1.47	0.92	0.70	0.83	2.23	7590	954	6	0	9	0	0	logfile
✔	8J1H	35922	2024-04-16	2023-04-12	3.88	4.37	3.89	4.3	0.009	0.76	0.0	0.07	13.71	0.00	1.927	21.46	0.19	12.0	87.5	0.5	-1.29	0.66	0.67	1.48	4.3	0.003	0.68	0.0	0.07	15.45	0.00	1.926	16.83	0.86	9.0	90.7	0.3	-0.53	0.41	0.66	0.67	1.06	38464	2356	8	0	4	0	19324	logfile
✔	8oQi	17111	2024-04-05	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.002	0.56	0.0	0.05	16.80	0.00	2.452	3.36	2.89	1.7	98.3	0.0	-1.57	1.22	0.52	0.86	3.69	3810	560	10	0	0	0	0	logfile
✔	8SG9	40453	2024-04-08	2023-04-12	2.9	3.49	2.92	3.2	0.004	0.53	0.0	0.04	13.77	0.00	1.928	6.71	0.00	3.1	96.9	0.0	1.67	0.85	0.88	2.78	3.2	0.003	0.58	0.0	0.04	15.10	0.00	1.837	7.15	0.65	3.3	96.7	0.0	1.24	2.13	0.85	0.89	2.63	65583	8522	49	0	48	19	0	logfile
✔	8SGJ	40457	2024-04-06	2023-04-12	3.1	3.60	3.20	3.5	0.004	0.70	0.0	0.05	12.73	0.01	1.994	5.39	0.00	2.6	97.4	0.0	-0.02	0.64	0.84	3.47	3.5	0.003	0.54	0.0	0.04	14.91	0.00	2.221	5.91	2.30	2.3	97.6	0.1	1.17	0.97	0.55	0.81	2.93	7667	982	4	0	9	1	0	logfile
✔	8SGQ	40464	2024-04-07	2023-04-12	3.7	4.22	3.84	3.6	0.003	0.64	0.0	0.04	14.79	0.00	2.031	16.53	0.00	5.3	94.6	0.0	0.13	0.80	0.73	0.49	3.7	0.004	0.73	1.0	0.04	16.24	0.00	1.808	18.95	1.51	5.6	94.3	0.0	-0.12	0.40	0.81	0.76	0.37	62187	8093	32	0	16	0	0	logfile
✔	8J12	35912	2024-04-07	2023-04-12	3.08	2.68	3.16	2.9	0.003	0.45	0.0	0.04	19.90	0.00	2.144	6.90	2.14	3.0	97.0	0.0	0.80	0.84	0.84	2.67	2.9	0.006	0.63	0.0	0.04	20.93	0.00	2.082	10.71	3.70	3.4	96.6	0.0	1.02	1.42	0.85	0.85	2.28	10704	809	8	194	9	0	0	logfile
✔	8SGP	40463	2024-04-08	2023-04-12	2.69	3.37	2.71	3.2	0.004	0.51	0.0	0.04	11.58	0.00	2.171	4.08	1.33	1.8	98.2	0.0	2.13	0.82	0.80	5.29	3.2	0.003	0.46	0.0	0.04	13.91	0.00	2.193	5.62	1.83	2.1	97.9	0.0	2.26	0.45	0.80	0.90	4.54	12100	1540	8	0	4	0	0	logfile
✔	8SG1	40450	2024-04-06	2023-04-11	2.94	3.40	3.06	3.4	0.005	0.89	2.0	0.06	13.73	0.01	2.235	6.41	1.78	2.3	97.7	0.0	0.06	0.52	0.80	3.35	3.4	0.002	0.55	0.0	0.04	14.99	0.00	2.223	4.99	2.51	2.7	97.3	0.0	0.70	0.35	0.54	0.81	3.22	8846	1127	7	0	3	0	0	logfile
✔	8oQ8	17108	2024-04-08	2023-04-11	2.9	2.64	2.80	2.8	0.014	0.97	0.0	0.08	11.03	0.01	2.175	2.36	0.84	2.3	97.7	0.0	1.82	0.64	0.87	4.88	2.8	0.003	0.54	0.0	0.04	15.09	0.00	2.248	2.47	3.04	2.5	97.5	0.0	1.78	0.81	0.64	0.88	4.11	14432	1680	15	0	46	132	0	logfile
✔	8J0o	35907	2024-04-11	2023-04-11	3.32	4.35	3.46	7.0	0.014	0.97	0.0	0.04	18.12	0.01	1.915	13.09	0.40	8.4	91.4	0.3	-1.15	0.52	0.21	0.30	3.9	0.004	0.96	0.0	0.05	17.51	0.01	2.116	18.47	2.55	8.1	91.6	0.3	-1.06	1.83	0.71	0.63	0.43	20986	2627	13	0	9	0	0	logfile
✔	8oQ5	17105	2024-04-06	2023-04-11	2.4	2.13	2.42	2.3	0.015	2.05	0.0	0.10	14.25	0.01	2.517	1.55	0.00	3.0	97.0	0.0	-5.16	0.77	0.77	4.67	2.3	0.005	0.83	0.0	0.04	18.88	0.00	2.241	13.91	1.91	1.5	98.5	0.0	-3.64	0.77	0.83	0.86	5.22	6528	816	12	0	0	0	0	logfile
✔	8J0N	35906	2024-04-10	2023-04-11	3.47	4.45	3.63	7.0	0.007	0.83	0.0	0.04	18.25	0.01	2.136	9.82	0.75	8.2	91.5	0.3	-1.04	0.53	0.23	0.17	4.1	0.004	0.95	0.0	0.05	17.88	0.01	2.106	21.11	2.90	8.5	91.1	0.4	-1.19	1.72	0.71	0.64	0.24	18475	2301	12	0	9	0	0	logfile
✔	8oQ3	17103	2024-04-12	2023-04-11	2.9	3.67	3.13	3.4	0.007	1.16	1.0	0.06	17.28	0.01	2.313	4.00	2.14	3.3	96.7	0.0	-1.83	0.81	0.85	2.69	3.4	0.005	0.67	0.0	0.05	16.73	0.00	2.114	9.56	2.07	3.8	96.2	0.0	0.33	0.76	0.80	0.84	2.62	26596	3358	8	0	8	0	0	logfile
✔	8SG4	40451	2024-04-07	2023-04-11	3.11	3.67	3.27	3.6	0.004	0.66	0.0	0.04	12.03	0.01	2.302	0.80	0.00	1.9	98.1	0.0	0.44	0.61	0.78	2.80	3.6	0.003	0.82	0.0	0.04	14.10	0.00	2.163	5.83	0.85	2.8	97.2	0.0	1.97	1.59	0.65	0.81	2.14	11715	1469	1	0	0	0	0	logfile
✔	8oQ6	17106	2024-04-08	2023-04-11	3.21	3.07	3.01	3.3	0.004	0.58	0.0	0.08	10.86	0.00	2.259	1.76	0.00	1.8	98.2	0.0	2.69	0.69	0.86	3.86	3.3	0.003	0.52	0.0	0.04	14.29	0.00	2.166	2.84	2.30	2.6	97.4	0.0	1.98	0.85	0.66	0.88	3.96	14477	1680	15	0	47	75	0	logfile
✔	8oQ7	17107	2024-04-08	2023-04-11	2.2	2.13	2.08	2.2	0.009	0.90	0.0	0.09	10.86	0.01	2.290	1.40	0.33	1.5	98.5	0.0	2.27	0.73	0.85	5.65	2.1	0.004	0.65	0.0	0.04	14.19	0.00	2.096	1.65	1.59	2.3	97.7	0.0	2.16	1.01	0.73	0.86	5.76	14702	1680	15	0	57	505	0	logfile
✔	8oQ4	17104	2024-04-08	2023-04-11	2.6	2.33	2.58	2.5	0.015	2.02	0.0	0.11	15.01	0.01	2.528	2.33	0.00	1.0	99.0	0.0	-5.03	0.81	0.78	1.89	2.5	0.006	0.86	0.0	0.05	19.74	0.00	2.147	13.56	3.14	1.8	98.2	0.0	-3.99	0.76	0.88	0.89	3.60	13056	1632	24	0	0	0	0	logfile

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