Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oQA	17110	2024-04-08	2023-04-11	2.9	2.48	2.90	2.9	0.003	0.59	0.0	0.06	10.52	0.00	2.070	3.88	0.61	0.9	99.1	0.0	2.11	0.68	0.85	4.55	2.8	0.003	0.61	0.0	0.04	15.86	0.00	2.162	3.88	3.91	1.2	98.8	0.0	1.40	1.71	0.66	0.86	4.21	13762	1650	10	0	36	0	0	logfile
✔	8SG8	40452	2024-04-08	2023-04-11	3.0	3.47	3.09	3.3	0.004	0.54	0.0	0.04	14.66	0.00	1.943	7.29	0.00	3.5	96.5	0.0	1.72	0.82	0.88	2.61	3.3	0.007	0.66	0.0	0.04	15.64	0.00	0.978	7.95	0.88	4.3	95.7	0.0	1.17	0.26	0.83	0.90	2.57	66839	8678	50	0	48	19	0	logfile
✔	8oQ8	17108	2024-04-08	2023-04-11	2.9	2.64	2.80	2.8	0.014	0.97	0.0	0.08	11.03	0.01	2.175	2.36	0.84	2.3	97.7	0.0	1.82	0.64	0.87	4.88	2.8	0.003	0.54	0.0	0.04	15.09	0.00	2.248	2.47	3.04	2.5	97.5	0.0	1.78	0.81	0.64	0.88	4.11	14432	1680	15	0	46	132	0	logfile
✔	8SEP	40424	2024-04-16	2023-04-10	3.57	4.53	3.71	3.4	0.006	1.08	0.0	0.06	14.53	0.01	2.181	6.49	2.77	3.1	96.8	0.1	-0.30	0.85	0.82	0.93	3.4	0.003	0.74	0.0	0.04	14.84	0.00	2.070	16.00	0.93	3.6	96.4	0.0	0.50	0.54	0.85	0.83	0.83	143100	17944	12	0	8	0	0	logfile
✔	8SEK	40419	2024-04-05	2023-04-10	3.5	3.55	3.07	3.8	0.032	2.39	0.0	0.14	10.43	0.01	2.397	1.27	0.00	20.0	80.0	0.0	-3.19	0.49	0.76	4.54	3.8	0.004	0.81	0.0	0.06	15.62	0.00	2.198	17.09	3.33	17.0	83.0	0.0	-4.18	1.30	0.39	0.73	1.55	2380	320	10	0	0	0	0	logfile
✔	8SES	40427	2024-04-15	2023-04-10	3.98	4.76	4.20	3.9	0.006	1.14	4.0	0.06	14.83	0.01	2.179	7.41	3.51	5.1	94.8	0.2	-0.30	0.84	0.83	0.21	3.9	0.005	0.79	1.0	0.04	15.08	0.00	2.042	24.03	1.28	5.5	94.5	0.0	-0.13	1.40	0.84	0.85	0.16	142940	17936	12	4	4	0	0	logfile
✔	8SFE	40439	2024-04-06	2023-04-10	3.36	3.93	3.53	3.6	0.003	0.65	0.0	0.04	14.92	0.00	2.072	15.02	0.00	6.6	93.4	0.1	-0.39	0.80	0.80	0.82	3.6	0.003	0.66	0.0	0.04	16.29	0.00	2.137	14.59	1.65	6.0	94.0	0.1	-0.40	0.39	0.80	0.82	0.52	60512	7881	32	0	16	0	0	logfile
✔	8SEL	40421	2024-04-05	2023-04-10	3.8	4.20	3.61	4.2	0.026	2.25	0.0	0.13	12.89	0.01	2.474	1.85	0.00	4.3	92.8	2.9	-1.59	0.59	0.73	3.09	4.1	0.005	1.00	0.0	0.06	18.09	0.00	2.287	24.93	6.96	15.7	84.3	0.0	-3.44	2.57	0.53	0.70	1.94	5500	730	20	0	0	0	0	logfile
✔	8SEV	40430	2024-04-10	2023-04-10	3.17	3.33	3.18	3.3	0.003	0.53	0.0	0.04	14.62	0.00	2.236	6.19	0.00	3.1	96.9	0.0	1.76	0.60	0.79	2.51	3.3	0.002	0.49	0.0	0.04	15.95	0.00	2.215	6.92	0.27	2.8	97.2	0.0	1.89	0.48	0.60	0.81	1.98	20632	2504	8	0	8	0	0	logfile
✔	8SEN	40422	2024-04-15	2023-04-10	3.49	4.62	3.61	3.4	0.005	1.00	0.0	0.06	14.41	0.01	2.182	5.24	2.75	2.7	97.1	0.1	-0.09	0.89	0.85	1.46	3.4	0.003	0.64	0.0	0.04	14.41	0.00	2.087	13.05	0.77	3.2	96.8	0.0	1.10	0.48	0.90	0.87	1.37	142960	17940	12	0	4	0	0	logfile
✔	8SEZ	40434	2024-04-10	2023-04-10	3.54	3.68	3.48	3.6	0.003	0.57	0.0	0.04	12.88	0.01	0.570	14.92	0.27	2.9	96.9	0.2	1.95	0.53	0.75	1.99	3.6	0.005	0.64	0.0	0.04	16.07	0.01	2.116	11.62	2.77	4.1	95.8	0.2	1.58	0.61	0.58	0.79	2.23	20580	2508	8	4	4	0	0	logfile
✔	8SF0	40435	2024-04-10	2023-04-10	2.9	3.06	2.90	3.0	0.003	0.50	0.0	0.04	15.10	0.00	2.161	6.14	0.00	2.4	97.6	0.0	1.75	0.63	0.81	2.42	3.0	0.003	0.55	0.0	0.03	17.61	0.00	2.223	7.71	1.74	1.0	99.0	0.0	2.15	0.38	0.64	0.83	2.28	20664	2512	8	0	8	0	0	logfile
✔	8SEX	40432	2024-04-10	2023-04-10	2.84	2.99	2.84	3.0	0.005	0.56	0.0	0.04	12.78	0.01	0.419	6.47	2.15	2.8	97.1	0.2	1.60	0.63	0.81	2.20	3.0	0.003	0.50	0.0	0.04	16.24	0.00	2.230	6.05	3.49	1.8	98.1	0.2	2.17	0.53	0.64	0.83	2.05	20568	2504	8	0	8	0	0	logfile
✔	8SEU	40429	2024-04-10	2023-04-10	3.0	3.25	3.00	3.2	0.005	0.72	8.0	0.05	12.63	0.00	1.873	7.45	1.96	2.3	97.4	0.3	1.51	0.59	0.85	2.48	3.2	0.002	0.51	0.0	0.04	15.50	0.00	2.223	6.02	2.23	1.7	98.2	0.2	2.92	1.40	0.57	0.85	2.21	20576	2512	8	0	4	0	0	logfile
✔	8SEW	40431	2024-04-10	2023-04-10	2.89	2.97	2.87	3.0	0.004	0.59	0.0	0.04	12.56	0.00	0.267	5.77	2.14	2.1	97.7	0.2	1.93	0.60	0.79	2.44	3.0	0.003	0.57	0.0	0.04	16.66	0.00	2.225	5.86	2.76	1.6	98.2	0.2	2.05	0.56	0.60	0.81	2.25	20716	2516	8	0	8	0	0	logfile
✔	8SEY	40433	2024-04-10	2023-04-10	2.99	3.15	3.05	3.1	0.002	0.46	0.0	0.04	13.63	0.00	2.224	4.52	0.00	2.5	97.5	0.0	1.73	0.64	0.84	2.70	3.1	0.003	0.51	0.0	0.04	16.54	0.00	2.175	5.23	2.42	2.2	97.8	0.0	1.94	0.37	0.65	0.87	2.62	20568	2504	8	0	8	0	0	logfile
✔	8SEH	40411	2024-04-05	2023-04-10	2.9	2.68	2.71	3.1	0.026	2.09	10.0	0.12	10.93	0.01	2.507	0.00	0.00	7.0	93.0	0.0	-2.29	0.52	0.80	4.20	3.0	0.007	0.80	0.0	0.05	17.57	0.01	2.212	7.83	4.22	8.0	92.0	0.0	-3.40	2.57	0.47	0.84	2.96	5570	730	10	0	0	0	0	logfile
✔	8iZY	35877	2024-04-09	2023-04-09	2.5	2.54	2.78	2.6	0.003	0.53	0.0	0.03	17.63	0.00	1.956	7.21	0.71	3.2	96.8	0.0	2.64	0.48	0.78	2.29	2.6	0.003	0.53	0.0	0.03	17.67	0.01	2.061	7.03	3.44	3.8	96.2	0.0	1.87	1.49	0.52	0.80	2.84	16776	1004	8	0	8	0	8360	logfile
✔	8J05	35884	2024-04-14	2023-04-09	2.7	2.90	2.73	2.9	0.003	0.47	0.0	0.03	17.08	0.00	1.861	8.59	0.84	3.7	96.3	0.0	2.22	0.51	0.68	2.28	2.9	0.006	0.57	0.0	0.04	17.45	0.00	1.781	9.79	2.39	3.1	96.9	0.0	2.08	1.02	0.54	0.73	2.77	31676	1960	8	0	0	0	15800	logfile
✔	8J02	35881	2024-04-14	2023-04-09	3.5	3.72	3.71	3.6	0.008	0.82	0.0	0.03	18.84	0.00	2.102	15.73	0.72	4.5	95.5	0.0	2.29	0.66	0.74	1.95	3.6	0.003	0.56	0.0	0.03	17.70	0.00	2.008	15.76	2.81	3.7	96.3	0.0	2.43	1.40	0.67	0.75	1.88	31360	1988	12	0	8	0	15244	logfile

• ← previous
• Page 73 of 610
• next →