Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J03	35882	2024-04-14	2023-04-09	2.7	2.89	2.83	3.2	0.008	0.75	0.0	0.03	18.80	0.00	1.872	12.55	2.27	4.4	95.6	0.0	1.00	0.50	0.68	1.89	3.2	0.003	0.53	0.0	0.03	17.73	0.00	1.934	11.11	2.71	4.0	96.0	0.0	0.99	0.52	0.51	0.71	1.94	30316	1892	12	0	4	0	15084	logfile
✔	8iZY	35877	2024-04-09	2023-04-09	2.5	2.54	2.78	2.6	0.003	0.53	0.0	0.03	17.63	0.00	1.956	7.21	0.71	3.2	96.8	0.0	2.64	0.48	0.78	2.29	2.6	0.003	0.53	0.0	0.03	17.67	0.01	2.061	7.03	3.44	3.8	96.2	0.0	1.87	1.49	0.52	0.80	2.84	16776	1004	8	0	8	0	8360	logfile
✔	8SEA	40408	2024-04-07	2023-04-08	3.4	3.67	3.45	3.7	0.005	0.57	0.0	0.04	11.77	0.00	1.270	8.65	3.00	4.0	96.0	0.0	0.54	0.71	0.76	1.96	3.6	0.003	0.58	0.0	0.04	14.31	0.00	2.221	9.29	3.00	4.3	95.7	0.0	0.65	0.37	0.76	0.84	1.51	10208	1299	5	0	1	0	0	logfile
✔	8SE9	40407	2024-04-07	2023-04-08	3.2	3.47	3.24	3.5	0.005	0.58	0.0	0.04	11.99	0.00	1.330	6.60	2.00	3.4	96.4	0.2	0.48	0.74	0.84	2.43	3.5	0.002	0.56	0.0	0.04	14.60	0.00	2.180	7.09	1.91	2.9	97.0	0.1	0.62	0.87	0.78	0.86	2.34	10195	1297	5	0	1	0	0	logfile
✔	8SEB	40409	2024-04-07	2023-04-08	3.24	3.49	3.29	3.4	0.005	0.58	0.0	0.04	12.08	0.00	2.213	7.32	1.74	4.4	95.5	0.1	0.67	0.65	0.72	1.85	3.4	0.003	0.60	0.0	0.04	14.53	0.00	1.070	9.31	2.90	4.0	95.9	0.1	0.50	0.55	0.72	0.80	2.09	9609	1223	4	0	1	0	0	logfile
✔	8oPH	17053	2024-04-11	2023-04-07	2.93	2.28	2.96	2.0	0.004	0.67	0.0	0.04	15.93	0.01	2.221	6.64	0.60	5.1	94.9	0.0	-1.59	0.77	0.78	3.10	2.0	0.004	0.67	0.0	0.04	16.95	0.01	2.200	7.87	1.74	5.3	94.7	0.0	0.47	0.45	0.77	0.78	2.52	21824	2704	16	0	0	0	0	logfile
✔	8oPD	17049	2024-04-15	2023-04-07	3.5	3.66	2.50	3.7	0.008	0.96	0.0	0.04	14.43	0.01	2.372	11.53	0.00	6.1	93.9	0.0	-3.36	0.42	0.74	3.03	3.6	0.003	0.67	0.0	0.04	16.27	0.01	2.184	8.42	2.83	2.1	97.9	0.0	-0.24	0.56	0.41	0.73	3.01	35040	4344	24	0	0	0	0	logfile
✔	8iZF	35863	2024-04-06	2023-04-07	3.85	4.31	3.92	4.2	0.006	1.10	0.0	0.06	16.15	0.01	1.945	21.89	2.73	9.5	89.8	0.7	-1.59	0.63	0.78	0.99	4.2	0.003	0.77	0.0	0.04	17.55	0.00	2.184	12.90	4.34	8.2	91.8	0.0	-0.53	0.83	0.60	0.78	1.58	7594	894	6	0	2	0	0	logfile
✔	8SDY	40354	2024-04-05	2023-04-07	2.79	3.13	2.86	3.1	0.003	0.60	0.0	0.04	16.73	0.01	2.018	4.74	0.72	1.4	98.6	0.0	2.03	0.62	0.83	2.49	3.1	0.003	0.55	0.0	0.04	16.97	0.00	2.206	4.86	1.44	1.9	98.1	0.0	2.13	0.27	0.59	0.81	1.46	3894	494	2	0	1	12	0	logfile
✔	8oPC	17048	2024-04-05	2023-04-07	2.99	3.29	3.16	3.2	0.005	0.77	0.0	0.04	17.78	0.00	2.198	8.83	1.08	5.4	94.6	0.0	-0.67	0.49	0.87	3.04	3.2	0.003	0.56	0.0	0.04	17.99	0.00	2.105	7.71	2.57	3.8	96.2	0.0	0.26	1.42	0.48	0.87	2.69	53088	6328	56	140	0	0	0	logfile
✔	8oPE	17050	2024-04-15	2023-04-07	3.09	3.18	3.17	3.1	0.005	0.69	0.0	0.04	18.43	0.01	2.456	5.64	0.24	1.1	98.9	0.0	0.16	0.46	0.79	2.12	3.1	0.006	0.62	0.0	0.04	19.09	0.01	2.144	8.88	3.28	2.6	97.4	0.0	0.39	1.64	0.50	0.88	2.71	33411	3906	42	105	0	0	0	logfile
✔	8oPG	17052	2024-04-11	2023-04-07	3.2	3.49	3.28	3.4	0.004	0.64	0.0	0.04	16.70	0.01	2.329	7.49	0.78	4.2	95.8	0.0	-2.73	0.53	0.83	2.68	3.4	0.003	0.63	0.0	0.04	17.03	0.00	2.162	8.58	1.48	5.4	94.6	0.0	-0.27	0.49	0.54	0.83	2.60	22059	2755	19	0	0	0	0	logfile
✔	8oPQ	17085	2024-04-07	2023-04-07	3.28	2.33	3.33	2.2	0.003	0.52	0.0	0.04	9.91	0.01	2.245	8.25	0.00	3.8	96.2	0.0	1.64	0.77	0.77	3.11	2.2	0.003	0.61	0.0	0.04	14.93	0.00	2.144	8.39	3.55	3.7	96.3	0.0	2.20	0.53	0.76	0.79	2.99	10006	1296	4	0	2	0	0	logfile
✔	8SDZ	40355	2024-04-05	2023-04-07	2.86	3.25	2.87	3.2	0.003	0.51	0.0	0.04	16.15	0.00	2.135	4.33	1.43	0.8	99.2	0.0	0.91	0.56	0.82	2.83	3.2	0.002	0.50	0.0	0.04	16.37	0.00	2.123	5.48	3.33	0.8	99.2	0.0	1.49	0.43	0.58	0.83	2.52	3913	500	2	0	1	22	0	logfile
✔	8iZD	35862	2024-04-06	2023-04-07	3.09	3.45	3.12	3.4	0.053	3.29	134.0	0.28	22.40	0.02	1.908	43.97	22.08	10.3	87.2	2.5	-4.20	0.63	0.81	2.43	3.4	0.003	0.67	0.0	0.04	19.28	0.00	2.115	7.31	5.96	6.2	93.8	0.0	0.29	0.70	0.58	0.79	2.81	7806	894	8	0	8	0	0	logfile
✔	8oPJ	17062	2024-04-08	2023-04-07	2.99	2.30	3.25	2.1	0.007	0.84	24.0	0.05	16.83	0.01	2.342	7.12	0.72	4.8	95.2	0.0	-1.75	0.78	0.77	2.69	2.0	0.003	0.75	0.0	0.04	18.43	0.01	2.064	10.23	3.26	4.1	95.9	0.0	-0.10	1.58	0.76	0.79	2.38	65352	8112	48	0	0	0	0	logfile
✔	8oPF	17051	2024-04-11	2023-04-07	2.83	3.10	3.08	3.1	0.004	0.59	0.0	0.04	17.43	0.01	2.443	7.89	0.53	2.1	97.9	0.0	-1.34	0.53	0.84	3.17	3.1	0.003	0.60	0.0	0.04	18.36	0.00	2.087	8.97	3.81	4.8	95.2	0.0	0.37	0.52	0.53	0.85	3.14	22401	2793	19	0	0	0	0	logfile
✔	8SDU	40352	2024-04-05	2023-04-07	2.05	2.16	2.08	2.1	0.002	0.49	0.0	0.04	14.85	0.00	2.231	4.34	0.71	1.0	99.0	0.0	2.05	0.74	0.85	5.13	2.1	0.002	0.53	0.0	0.04	15.10	0.00	2.223	3.70	1.19	1.0	99.0	0.0	2.93	0.23	0.73	0.85	4.81	3942	500	2	0	0	70	0	logfile
✔	8oPB	17047	2024-04-11	2023-04-07	3.58	3.97	3.72	3.9	0.004	0.89	0.0	0.04	15.41	0.01	2.325	9.17	0.63	5.0	94.4	0.6	-1.65	0.53	0.83	2.42	3.9	0.003	0.79	0.0	0.04	16.06	0.01	2.144	11.52	2.65	4.6	95.4	0.0	-0.06	0.54	0.56	0.83	2.13	23328	2896	16	0	0	0	0	logfile
✔	8oPA	17046	2024-04-15	2023-04-07	3.34	3.71	3.54	3.7	0.006	0.86	0.0	0.05	16.75	0.00	2.391	7.55	0.00	5.0	95.0	0.0	-2.04	0.66	0.84	2.44	3.7	0.003	0.70	0.0	0.04	18.16	0.00	2.124	7.24	2.48	4.6	95.4	0.0	-0.63	0.57	0.66	0.83	2.10	34992	4344	24	0	0	0	0	logfile

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