Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ooU	17031	2024-04-07	2023-04-06	2.9	3.00	2.93	2.9	0.021	1.03	0.0	0.04	14.49	0.00	2.203	9.12	0.00	2.4	97.6	0.0	0.71	0.80	0.85	3.26	2.9	0.003	0.53	0.0	0.04	16.46	0.00	2.207	8.60	1.69	1.5	98.5	0.0	1.68	0.37	0.82	0.87	2.81	61800	7560	22	140	0	0	0	logfile
✔	8SD3	40349	2024-04-08	2023-04-06	2.95	3.05	3.06	3.2	0.010	1.08	0.0	0.04	16.42	0.01	2.187	9.06	0.00	1.3	98.7	0.0	1.86	0.54	0.76	3.98	3.1	0.002	0.47	0.0	0.03	15.61	0.01	2.133	8.75	0.65	0.5	99.5	0.0	2.32	0.61	0.56	0.81	3.59	14656	948	8	0	28	0	6824	logfile
✔	8oP9	17045	2024-04-08	2023-04-06	3.36	3.32	3.35	3.6	0.003	0.55	0.0	0.04	8.96	0.00	2.012	3.97	0.34	0.3	99.7	0.0	2.02	0.61	0.78	2.96	3.6	0.003	0.56	0.0	0.04	14.01	0.00	2.182	4.48	2.96	2.4	97.6	0.0	1.08	1.35	0.63	0.84	3.41	13811	1660	15	0	36	10	0	logfile
✔	8iYW	35831	2024-04-06	2023-04-06	3.45	3.86	3.54	3.8	0.005	0.84	0.0	0.05	12.73	0.01	2.252	5.71	1.45	3.3	96.7	0.0	0.09	0.68	0.79	3.77	3.8	0.003	0.61	0.0	0.04	13.77	0.00	2.250	6.45	3.48	3.6	96.4	0.0	0.72	0.39	0.60	0.72	2.87	7849	1118	6	0	1	0	0	logfile
✔	8SD0	40348	2024-04-05	2023-04-06	3.8	3.94	3.78	3.9	0.004	0.86	0.0	0.05	18.36	0.01	2.276	9.69	0.52	6.8	93.2	0.0	-1.62	0.73	0.79	1.64	3.9	0.004	0.68	0.0	0.04	18.75	0.00	1.556	13.30	4.00	7.5	92.5	0.0	-0.32	0.44	0.73	0.80	1.84	5829	636	3	31	2	0	0	logfile
✔	8oP2	17038	2024-04-06	2023-04-06	2.8	2.98	2.90	3.0	0.017	1.06	0.0	0.05	16.53	0.00	2.165	8.68	5.19	3.0	97.0	0.0	0.82	0.75	0.83	2.44	3.0	0.011	0.64	0.0	0.04	17.62	0.00	2.168	7.12	2.03	2.4	97.6	0.0	1.95	0.55	0.75	0.84	2.26	60280	7380	22	140	0	0	0	logfile
✔	8SCZ	40347	2024-04-05	2023-04-06	3.4	3.48	3.27	3.5	0.004	0.82	0.0	0.04	19.41	0.01	1.836	11.63	0.35	6.2	93.6	0.2	-2.21	0.60	0.66	1.04	3.5	0.002	0.53	0.0	0.04	19.50	0.00	2.267	13.51	3.15	5.4	94.6	0.0	0.06	1.14	0.61	0.69	1.15	6411	635	3	59	2	0	0	logfile
✔	8SDA	40350	2024-04-06	2023-04-06	3.32	3.41	3.16	3.4	0.008	1.11	0.0	0.04	15.99	0.00	2.225	15.46	0.00	2.7	97.3	0.0	1.62	0.63	0.81	2.02	3.5	0.003	0.58	0.0	0.04	16.07	0.00	2.158	8.30	1.49	2.0	98.0	0.0	3.16	0.94	0.66	0.85	1.60	7414	939	8	0	19	0	0	logfile
✔	8iYX	35832	2024-04-05	2023-04-06	3.34	3.71	3.03	3.6	0.006	0.87	0.0	0.28	16.15	0.00	2.252	12.03	4.08	3.5	96.1	0.4	0.98	0.48	0.81	1.56	3.7	0.003	1.08	0.0	0.12	17.41	0.00	2.200	10.69	2.04	3.1	96.9	0.0	2.96	1.41	0.49	0.84	0.91	2207	266	2	0	1	0	0	logfile
✔	8ooY	17033	2024-04-05	2023-04-06	4.0	3.79	3.92	3.7	0.004	0.68	0.0	0.04	20.02	0.00	2.016	12.57	0.79	5.1	94.9	0.0	-0.97	0.81	0.77	—	3.7	0.003	0.62	0.0	0.04	21.35	0.00	2.143	12.31	2.76	5.3	94.7	0.0	0.12	0.40	0.81	0.77	—	5828	604	5	51	1	0	0	logfile
✔	8oP1	17035	2024-04-09	2023-04-06	3.5	3.75	3.42	3.7	0.006	0.75	0.0	0.05	15.51	0.00	2.154	12.80	0.00	6.3	93.7	0.0	-0.39	0.65	0.79	1.94	3.7	0.003	0.62	0.0	0.04	17.01	0.00	2.169	10.23	2.10	4.4	95.6	0.0	1.07	0.44	0.64	0.77	1.32	15415	1890	10	35	0	0	0	logfile
✔	8iZB	35838	2024-04-06	2023-04-06	3.06	3.27	3.20	3.2	0.002	0.54	0.0	0.05	9.63	0.00	2.235	5.16	0.68	1.6	98.4	0.0	0.89	0.67	0.81	3.32	3.2	0.003	0.54	0.0	0.04	14.17	0.00	1.499	8.43	3.61	2.2	97.8	0.0	1.64	1.67	0.69	0.83	2.78	8322	1046	6	0	3	0	0	logfile
✔	8ooF	17012	2024-04-05	2023-04-05	2.9	1.91	3.05	2.8	0.004	0.71	0.0	0.05	13.65	0.01	2.043	2.60	0.00	2.9	97.1	0.0	-0.80	0.84	0.83	4.92	2.6	0.004	0.63	0.0	0.04	16.26	0.00	1.987	7.68	2.14	3.5	96.5	0.0	0.63	1.96	0.85	0.84	4.57	4479	556	2	0	2	0	0	logfile
✔	8ooS	17027	2024-04-08	2023-04-05	3.29	1.76	3.20	3.1	0.007	1.29	0.0	0.05	24.79	0.01	1.879	4.57	0.00	3.2	96.8	0.0	-2.38	0.71	0.73	2.66	3.1	0.004	0.79	0.0	0.04	25.62	0.00	1.892	10.10	1.91	3.2	96.8	0.0	0.82	1.60	0.74	0.74	1.82	12307	966	10	217	3	0	0	logfile
✔	8ooP	17025	2024-04-16	2023-04-05	2.7	1.99	—	2.8	0.006	1.06	0.0	0.06	18.30	0.01	1.775	2.00	0.00	2.4	97.6	0.0	-1.11	0.84	0.83	3.82	2.8	0.004	0.72	0.0	0.04	20.15	0.00	1.368	7.60	1.41	2.3	97.7	0.0	1.04	1.37	0.85	0.84	2.69	40747	4677	26	217	11	0	0	logfile
✔	8ooT	17028	2024-04-05	2023-04-05	2.85	3.10	2.87	2.8	0.003	0.64	0.0	0.05	13.62	0.01	1.743	2.03	0.00	3.5	96.5	0.0	-0.61	0.89	0.87	5.43	2.8	0.003	0.63	0.0	0.04	15.05	0.00	1.985	6.78	0.86	2.2	97.8	0.0	0.56	0.77	0.89	0.87	4.29	4479	556	2	0	2	0	0	logfile
✔	8SCX	40346	2024-04-05	2023-04-05	2.7	3.26	2.76	3.1	0.006	0.70	0.0	0.04	14.97	0.00	2.240	5.56	0.18	1.9	98.1	0.0	1.27	0.69	0.85	4.05	3.1	0.003	0.53	0.0	0.04	16.36	0.00	2.214	6.88	2.69	2.4	97.6	0.0	2.09	0.39	0.65	0.84	3.54	5753	760	7	0	2	0	0	logfile
✔	8ooi	17016	2024-04-15	2023-04-05	2.61	2.14	—	1.7	0.005	0.70	0.0	0.05	15.39	0.00	1.501	10.42	0.16	4.5	95.1	0.4	-0.61	0.83	0.80	3.03	1.6	0.003	0.65	0.0	0.04	16.82	0.00	2.048	10.90	2.21	6.0	93.7	0.3	-0.10	0.92	0.84	0.83	2.88	35256	4404	18	0	36	144	0	logfile
✔	8iYK	35824	2024-04-11	2023-04-05	2.95	3.32	3.08	3.2	0.003	0.64	1.0	0.05	18.22	0.00	2.066	11.71	7.67	7.1	92.3	0.6	-1.67	0.78	0.87	2.43	3.2	0.004	0.64	0.0	0.05	17.88	0.00	2.028	11.73	4.67	7.3	92.2	0.5	-1.63	0.21	0.78	0.87	2.38	77370	10248	45	0	3	0	0	logfile
✔	8iYL	35825	2024-04-11	2023-04-05	3.0	3.35	3.11	3.2	0.004	0.66	0.0	0.05	18.10	0.01	2.040	11.95	7.11	7.1	92.3	0.6	-1.70	0.78	0.84	2.48	3.2	0.003	0.63	0.0	0.05	17.88	0.01	2.030	11.63	5.59	7.2	92.2	0.5	-1.63	0.20	0.79	0.86	2.49	77370	10248	45	0	3	0	0	logfile

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