Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iYK	35824	2024-04-11	2023-04-05	2.95	3.32	3.08	3.2	0.003	0.64	1.0	0.05	18.22	0.00	2.066	11.71	7.67	7.1	92.3	0.6	-1.67	0.78	0.87	2.43	3.2	0.004	0.64	0.0	0.05	17.88	0.00	2.028	11.73	4.67	7.3	92.2	0.5	-1.63	0.21	0.78	0.87	2.38	77370	10248	45	0	3	0	0	logfile
✔	8iYL	35825	2024-04-11	2023-04-05	3.0	3.35	3.11	3.2	0.004	0.66	0.0	0.05	18.10	0.01	2.040	11.95	7.11	7.1	92.3	0.6	-1.70	0.78	0.84	2.48	3.2	0.003	0.63	0.0	0.05	17.88	0.01	2.030	11.63	5.59	7.2	92.2	0.5	-1.63	0.20	0.79	0.86	2.49	77370	10248	45	0	3	0	0	logfile
✔	8SC4	40337	2024-04-05	2023-04-04	3.46	3.65	3.43	3.6	0.004	0.68	0.0	0.04	10.98	0.03	2.296	2.80	0.00	2.9	97.1	0.0	-0.96	0.57	0.77	2.57	3.6	0.003	0.80	0.0	0.04	15.54	0.00	2.168	11.75	2.63	2.2	97.8	0.0	2.52	1.21	0.57	0.79	2.72	3544	456	2	0	1	0	0	logfile
✔	8iY9	35817	2024-04-06	2023-04-04	3.37	3.65	3.39	3.7	0.005	0.90	1.0	0.05	12.94	0.01	2.123	3.88	1.07	3.1	96.9	0.0	-0.48	0.70	0.79	3.58	3.7	0.002	0.56	0.0	0.04	14.03	0.00	2.177	5.43	3.06	1.9	98.1	0.0	0.86	0.44	0.70	0.81	2.93	8121	1130	6	0	1	0	0	logfile
✔	8SC2	40335	2024-04-05	2023-04-04	3.36	3.56	3.32	3.5	0.003	0.55	0.0	0.04	8.52	0.00	2.258	3.93	0.00	1.3	98.7	0.0	2.79	0.58	0.81	1.97	3.5	0.003	0.63	0.0	0.04	13.34	0.00	2.098	7.86	2.92	2.2	97.8	0.0	1.74	1.03	0.58	0.82	1.93	3534	453	2	0	1	0	0	logfile
✔	8SC1	40334	2024-04-05	2023-04-04	2.92	3.14	2.89	3.2	0.003	0.68	0.0	0.04	10.47	0.01	2.266	1.15	0.00	2.5	97.5	0.0	-0.78	0.58	0.81	2.42	3.2	0.003	0.61	0.0	0.04	13.73	0.00	2.195	2.73	1.89	1.4	98.6	0.0	1.94	1.99	0.61	0.83	1.25	3447	446	1	0	0	0	0	logfile
✔	8iYH	35822	2024-04-06	2023-04-04	3.3	3.51	3.29	3.5	0.004	0.72	0.0	0.05	13.48	0.01	2.204	5.25	1.08	2.3	97.7	0.0	0.53	0.69	0.80	3.40	3.5	0.004	0.57	0.0	0.04	14.61	0.00	2.193	6.04	5.14	2.7	97.3	0.0	0.27	0.39	0.69	0.83	3.12	8035	1119	6	0	1	0	0	logfile
✔	8iY6	35815	2024-04-05	2023-04-04	3.13	3.04	3.19	3.1	0.003	0.55	0.0	0.04	12.05	0.00	2.168	6.91	0.00	2.3	97.7	0.0	1.84	0.42	0.61	2.08	3.1	0.003	0.65	0.0	0.04	14.68	0.00	2.188	11.45	2.84	1.6	98.4	0.0	2.38	1.27	0.42	0.63	1.39	2495	314	2	0	0	0	0	logfile
✔	8oo7	17006	2024-04-16	2023-04-04	2.8	1.96	—	2.8	0.004	0.95	0.0	0.05	18.24	0.01	1.779	3.33	0.00	2.3	97.7	0.0	-1.13	0.82	0.81	3.75	2.8	0.003	0.66	0.0	0.04	20.38	0.00	1.628	7.90	1.73	1.9	98.1	0.0	0.98	1.38	0.84	0.82	2.90	41024	4693	26	226	11	0	0	logfile
✔	8SC3	40336	2024-04-05	2023-04-04	3.24	3.44	3.19	3.4	0.004	0.71	0.0	0.04	11.48	0.01	2.206	2.15	0.00	1.6	98.4	0.0	-0.54	0.59	0.78	2.69	3.4	0.003	0.71	0.0	0.04	15.08	0.00	2.131	11.06	2.17	2.3	97.7	0.0	2.24	2.22	0.58	0.80	2.17	3463	445	2	0	1	0	0	logfile
✔	8oo9	17007	2024-04-05	2023-04-04	3.2	2.32	3.17	3.1	0.010	1.70	0.0	0.06	20.61	0.01	1.879	4.84	0.00	2.3	97.7	0.0	-2.21	0.81	0.78	3.72	3.1	0.004	0.62	0.0	0.04	21.94	0.00	1.615	10.38	2.27	2.1	97.9	0.0	-0.46	1.38	0.83	0.81	2.81	4516	439	4	42	3	0	0	logfile
✔	8SC6	40339	2024-04-05	2023-04-04	3.13	3.36	3.12	3.4	0.003	0.50	0.0	0.03	8.71	0.00	2.273	3.28	0.81	0.9	99.1	0.0	2.80	0.58	0.82	2.08	3.4	0.002	0.48	0.0	0.03	12.71	0.00	2.229	4.99	1.62	1.6	98.4	0.0	2.54	0.48	0.54	0.81	1.84	3479	447	2	0	1	0	0	logfile
✔	8iY5	35814	2024-04-07	2023-04-04	2.8	2.81	2.81	3.0	0.003	0.68	0.0	0.04	13.17	0.00	2.166	11.68	0.00	3.9	95.9	0.3	-0.34	0.47	0.57	1.96	3.0	0.003	0.68	0.0	0.04	15.52	0.00	2.163	12.29	1.59	4.4	95.3	0.3	0.25	0.51	0.45	0.65	1.43	9176	1177	6	0	0	0	0	logfile
✔	8oo6	17005	2024-04-05	2023-04-04	4.3	4.37	4.20	4.1	0.003	0.67	0.0	0.04	20.16	0.00	2.225	10.88	0.00	4.2	95.8	0.0	-0.09	0.88	0.81	—	4.1	0.003	0.60	0.0	0.04	20.10	0.00	2.228	10.43	0.00	5.3	94.7	0.0	0.25	1.58	0.89	0.83	—	5890	604	5	54	1	0	0	logfile
✔	8ooA	17008	2024-04-06	2023-04-04	3.18	1.83	3.09	2.8	0.008	1.08	0.0	0.06	27.96	0.01	2.299	5.05	0.00	1.5	98.5	0.0	-2.10	0.75	0.76	3.22	2.8	0.004	0.59	0.0	0.04	28.25	0.00	2.142	8.18	2.71	1.5	98.5	0.0	2.17	1.02	0.77	0.76	2.43	8405	529	8	204	0	0	0	logfile
✔	8oNT	17000	2024-04-05	2023-04-03	3.66	3.95	3.45	3.9	0.006	0.67	0.0	0.04	16.92	0.01	1.908	33.89	0.87	6.7	93.3	0.0	1.63	0.63	0.79	0.81	3.9	0.003	0.54	0.0	0.04	16.01	0.00	2.078	8.10	2.83	5.8	94.2	0.0	1.86	0.32	0.63	0.78	0.72	4316	558	3	0	1	1	0	logfile
✔	8SBB	40303	2024-04-05	2023-04-03	3.59	4.04	3.46	3.9	0.016	1.33	0.0	0.07	15.68	0.01	2.146	19.11	3.99	14.9	85.1	0.0	-5.32	0.64	0.80	2.32	3.9	0.003	0.71	0.0	0.04	16.31	0.01	2.167	7.20	3.52	5.9	94.1	0.0	-2.12	0.82	0.66	0.82	2.20	4049	499	3	0	3	0	0	logfile
✔	8SBD	40305	2024-04-06	2023-04-03	3.2	3.26	4.77	3.7	0.003	0.73	0.0	0.04	12.98	0.00	2.203	18.83	5.97	6.2	93.8	0.0	-4.19	0.70	0.71	2.96	3.7	0.004	0.70	0.0	0.05	15.82	0.00	1.893	26.32	4.66	13.3	86.7	0.0	-4.19	1.07	0.72	0.74	3.13	8864	584	32	0	0	0	4280	logfile
✔	8SB3	40289	2024-04-16	2023-04-02	4.1	4.41	4.14	4.2	0.007	1.04	0.0	0.05	17.07	0.01	2.138	2.68	0.00	7.6	91.9	0.5	-2.11	0.74	0.73	—	4.2	0.004	0.69	0.0	0.04	13.11	0.00	1.940	14.21	0.00	9.5	90.0	0.5	-2.20	1.34	0.76	0.78	—	38690	2460	24	0	79	0	18600	logfile
✔	8SB0	40286	2024-04-10	2023-04-02	4.2	4.27	3.94	4.2	0.006	0.95	0.0	0.05	15.00	0.01	2.050	2.37	0.05	6.4	93.3	0.2	-1.76	0.73	0.77	—	4.2	0.006	0.79	0.0	0.05	13.85	0.01	2.179	9.84	0.00	7.6	92.1	0.2	-1.72	0.66	0.76	0.81	—	19741	2445	24	0	57	0	0	logfile

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