Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SB4	40290	2024-04-10	2023-04-02	3.6	3.84	3.60	3.8	0.006	0.93	0.0	0.05	16.32	0.01	2.071	2.69	0.00	4.8	94.8	0.3	-1.55	0.69	0.76	2.46	3.8	0.004	0.84	1.0	0.04	15.31	0.00	2.145	9.64	2.97	4.7	95.0	0.3	-0.71	1.37	0.73	0.80	2.25	20041	2490	24	0	56	0	0	logfile
✔	8SB2	40288	2024-04-10	2023-04-02	3.5	3.70	3.44	3.6	0.006	1.10	2.0	0.06	16.75	0.01	2.266	3.86	0.00	5.4	94.5	0.2	-2.09	0.74	0.77	2.54	3.6	0.006	0.81	0.0	0.06	15.19	0.00	1.996	10.15	3.05	7.2	92.5	0.3	-1.63	1.17	0.75	0.79	2.36	20186	2478	27	0	82	0	0	logfile
✔	8SB1	40287	2024-04-10	2023-04-02	4.3	4.23	4.16	4.2	0.007	1.00	0.0	0.05	16.34	0.01	2.035	3.18	0.00	7.1	92.7	0.2	-2.33	0.70	0.76	—	4.2	0.004	0.74	0.0	0.05	13.56	0.00	2.158	11.03	0.00	6.3	93.4	0.4	-1.79	0.53	0.70	0.76	—	19979	2466	24	0	67	0	0	logfile
✔	8SB0	40286	2024-04-10	2023-04-02	4.2	4.27	3.94	4.2	0.006	0.95	0.0	0.05	15.00	0.01	2.050	2.37	0.05	6.4	93.3	0.2	-1.76	0.73	0.77	—	4.2	0.006	0.79	0.0	0.05	13.85	0.01	2.179	9.84	0.00	7.6	92.1	0.2	-1.72	0.66	0.76	0.81	—	19741	2445	24	0	57	0	0	logfile
✔	8SAZ	40285	2024-04-10	2023-04-02	3.9	4.14	3.89	4.1	0.006	0.98	0.0	0.05	17.30	0.01	2.168	2.47	0.14	5.4	94.5	0.1	-1.89	0.72	0.76	2.12	4.1	0.003	0.76	0.0	0.04	15.44	0.00	2.056	8.48	2.30	4.7	95.1	0.2	-0.81	1.42	0.76	0.81	2.37	19960	2466	24	0	65	0	0	logfile
✔	8SAV	40281	2024-04-10	2023-04-02	4.0	4.33	3.51	4.2	0.005	0.92	0.0	0.05	17.30	0.00	2.003	3.04	0.14	6.6	93.2	0.2	-1.54	0.77	0.78	—	4.2	0.005	0.78	0.0	0.05	15.96	0.00	2.050	10.79	2.62	8.6	91.1	0.2	-1.44	0.48	0.77	0.80	—	20451	2514	30	0	54	0	0	logfile
✔	8SAU	40280	2024-04-10	2023-04-02	3.3	3.58	3.36	3.5	0.006	0.99	0.0	0.05	16.97	0.01	2.063	3.23	0.05	7.2	92.5	0.3	-2.22	0.69	0.74	2.37	3.6	0.003	0.71	0.0	0.04	16.05	0.00	2.158	7.20	3.38	5.0	94.8	0.2	-1.08	0.83	0.72	0.79	2.02	19884	2466	24	0	57	0	0	logfile
✔	8SB5	40291	2024-04-10	2023-04-02	3.9	4.10	3.92	4.1	0.006	1.00	1.0	0.05	17.06	0.01	2.103	2.80	0.00	5.2	94.4	0.4	-1.51	0.69	0.74	2.61	4.1	0.003	0.73	0.0	0.05	15.51	0.00	2.099	12.00	2.61	6.0	93.7	0.2	-0.72	1.17	0.70	0.76	2.08	20205	2489	24	0	74	0	0	logfile
✔	8SB3	40289	2024-04-16	2023-04-02	4.1	4.41	4.14	4.2	0.007	1.04	0.0	0.05	17.07	0.01	2.138	2.68	0.00	7.6	91.9	0.5	-2.11	0.74	0.73	—	4.2	0.004	0.69	0.0	0.04	13.11	0.00	1.940	14.21	0.00	9.5	90.0	0.5	-2.20	1.34	0.76	0.78	—	38690	2460	24	0	79	0	18600	logfile
✔	8SAi	40270	2024-04-06	2023-04-01	3.27	2.43	—	3.2	0.003	0.57	0.0	0.04	13.99	0.00	2.199	6.68	0.10	3.0	97.0	0.0	0.99	0.78	0.78	2.17	3.2	0.003	0.55	0.0	0.04	15.35	0.00	2.033	5.30	1.81	4.0	96.0	0.0	0.94	0.50	0.80	0.83	2.41	9062	1148	6	0	0	0	0	logfile
✔	8SAL	40273	2024-04-10	2023-04-01	4.9	5.54	4.74	5.0	0.005	0.89	0.0	0.05	13.67	0.01	2.065	4.56	0.00	8.4	91.4	0.1	-2.31	0.76	0.70	—	4.9	0.006	0.97	0.0	0.05	13.56	0.01	1.992	37.35	0.00	11.1	88.7	0.2	-2.29	2.71	0.80	0.79	—	18435	2343	12	0	0	0	0	logfile
✔	8iXK	35794	2024-04-08	2023-04-01	3.3	3.43	3.25	3.4	0.005	0.71	0.0	0.04	12.45	0.00	2.310	4.15	0.65	2.9	97.1	0.0	4.29	0.77	0.86	2.56	3.4	0.003	0.48	0.0	0.03	14.98	0.00	2.232	6.09	1.43	1.3	98.7	0.0	4.69	0.37	0.76	0.87	2.16	14790	1950	25	0	0	0	0	logfile
✔	8iXJ	35793	2024-04-08	2023-04-01	3.1	3.03	3.07	3.1	0.012	1.45	0.0	0.09	10.47	0.00	2.412	3.04	0.00	0.0	100.0	0.0	3.48	0.67	0.86	2.90	3.1	0.002	0.32	0.0	0.03	13.99	0.00	2.218	2.29	0.88	0.0	100.0	0.0	7.14	1.01	0.65	0.85	0.93	13760	1840	40	0	0	0	0	logfile
✔	8SAQ	40275	2024-04-10	2023-04-01	3.9	4.17	3.91	4.1	0.005	0.88	0.0	0.05	14.84	0.01	1.985	5.03	0.05	7.7	92.0	0.2	-1.78	0.73	0.77	2.26	4.1	0.005	0.91	1.0	0.05	15.31	0.00	1.460	13.17	3.08	7.9	91.9	0.1	-1.35	1.16	0.75	0.80	1.85	18946	2364	21	0	36	0	0	logfile
✔	8SAK	40272	2024-04-13	2023-04-01	3.0	2.08	—	1.9	0.004	0.51	0.0	0.04	13.23	0.01	2.167	4.54	2.03	2.4	97.6	0.0	-0.27	0.73	0.76	4.12	1.7	0.004	0.65	1.0	0.05	14.78	0.00	2.115	6.40	3.78	2.5	97.5	0.0	0.30	1.76	0.74	0.78	3.65	28522	3598	24	0	56	0	0	logfile
✔	8oNA	16984	2024-04-08	2023-04-01	3.0	2.29	2.92	2.1	0.004	0.74	0.0	0.05	13.10	0.00	2.322	3.79	0.43	2.5	97.5	0.0	0.59	0.71	0.75	4.09	2.1	0.004	0.68	0.0	0.04	15.76	0.00	2.131	7.82	1.86	3.0	97.0	0.0	1.23	1.55	0.79	0.81	3.77	12900	1581	9	0	18	0	0	logfile
✔	8oN7	16981	2024-04-08	2023-04-01	2.5	2.19	2.49	2.0	0.004	0.71	0.0	0.05	13.29	0.00	2.122	3.60	0.21	2.3	97.7	0.0	1.48	0.74	0.78	4.93	2.0	0.002	0.58	0.0	0.04	15.81	0.00	2.269	5.55	1.71	3.0	97.0	0.0	1.57	1.13	0.83	0.83	3.97	13032	1587	15	0	24	0	0	logfile
✔	8oN8	16982	2024-04-08	2023-04-01	2.7	2.28	2.63	2.1	0.003	0.65	0.0	0.04	12.58	0.00	2.295	3.01	0.00	1.9	98.1	0.0	1.34	0.72	0.76	4.15	2.1	0.003	0.62	0.0	0.04	15.46	0.00	2.202	6.88	2.23	2.6	97.4	0.0	1.35	0.48	0.81	0.82	3.81	12891	1572	12	0	21	0	0	logfile
✔	8SAN	40274	2024-04-10	2023-04-01	4.6	4.80	4.46	4.7	0.006	0.97	0.0	0.06	16.78	0.01	2.064	5.03	0.09	9.9	89.9	0.2	-2.24	0.68	0.75	—	4.7	0.003	0.76	0.0	0.05	13.98	0.00	2.097	13.36	0.05	8.2	91.6	0.2	-1.82	0.55	0.69	0.77	—	19908	2454	21	0	48	0	0	logfile
✔	8oN9	16983	2024-04-08	2023-04-01	2.4	2.27	2.36	2.0	0.005	0.74	0.0	0.05	12.86	0.01	2.175	3.29	0.00	1.4	98.6	0.0	1.48	0.74	0.78	4.34	2.0	0.003	0.65	0.0	0.04	15.51	0.00	2.206	5.83	2.92	2.7	97.3	0.0	1.24	0.52	0.83	0.84	4.08	13014	1587	15	0	24	0	0	logfile

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