Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NA7	24267	2025-04-30	2021-06-20	2.7	2.07	—	2.0	0.006	1.04	5.0	0.22	14.70	0.01	2.178	7.05	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.81	0.0	0.06	17.01	0.00	2.431	7.32	2.55	2.1	97.9	0.0	0.56	0.53	0.81	0.82	3.80	9036	1142	7	0	2	0	0	logfile
✔	7NA8	24268	2025-04-30	2021-06-20	2.7	3.19	—	3.1	0.007	0.93	5.0	0.06	15.00	0.00	2.112	7.91	0.31	3.1	96.9	0.0	-1.04	0.78	0.87	4.31	3.1	0.002	0.58	0.0	0.04	15.73	0.00	2.451	6.27	1.04	2.9	97.1	0.0	0.61	0.38	0.71	0.86	3.72	8888	1124	6	0	2	0	0	logfile
✔	7F4i	31453	2025-04-28	2021-06-18	3.1	3.87	—	3.5	0.009	1.21	0.0	0.06	11.96	0.01	2.169	1.75	0.00	4.3	95.7	0.0	-0.38	0.67	0.82	3.32	3.5	0.005	0.73	0.0	0.04	15.09	0.00	2.312	7.37	2.09	2.4	97.6	0.0	1.63	2.49	0.66	0.83	2.24	8031	1030	7	0	1	0	0	logfile
✔	7F4D	31448	2025-04-28	2021-06-18	3.0	3.72	—	3.4	0.009	1.07	0.0	0.06	12.50	0.01	2.011	3.93	0.00	3.5	96.5	0.0	-0.88	0.69	0.82	3.59	3.4	0.004	0.80	0.0	0.04	15.40	0.00	2.432	10.53	2.19	2.2	97.8	0.0	1.09	0.76	0.69	0.82	2.41	8047	1030	7	0	1	0	0	logfile
✔	7N9W	24263	2025-04-27	2021-06-18	4.16	4.20	—	4.2	0.005	1.08	0.0	0.06	14.64	0.01	2.258	5.10	1.40	6.7	93.2	0.1	-5.14	0.63	0.77	—	4.2	0.003	0.76	0.0	0.04	13.80	0.00	2.314	10.43	0.00	6.5	93.5	0.0	-1.22	0.62	0.65	0.78	—	6561	890	2	0	0	0	0	logfile
✔	7N9Q	24259	2025-04-28	2021-06-18	4.6	4.92	—	2.4	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.6	0.009	1.82	0.0	0.00	9.55	0.00	2.311	53.41	0.00	30.7	67.9	1.5	-4.96	2.68	0.86	0.83	—	6945	2315	1	0	0	0	0	logfile
✔	7F4F	31449	2025-04-29	2021-06-18	2.9	3.43	—	3.2	0.010	1.09	0.0	0.06	12.60	0.01	2.164	4.69	0.00	3.9	96.1	0.0	-0.89	0.73	0.82	3.96	3.2	0.005	0.71	0.0	0.04	15.38	0.00	2.310	9.10	1.25	2.9	97.1	0.0	1.41	1.30	0.71	0.85	3.44	8881	1138	8	0	2	0	0	logfile
✔	7N9Y	24264	2025-04-28	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.3	0.021	1.74	0.0	0.00	9.17	0.00	2.366	38.04	0.00	29.3	69.7	1.0	-5.15	3.39	0.53	0.32	—	7515	2505	2	0	0	0	0	logfile
✔	7F46	31444	2025-04-28	2021-06-17	4.79	5.15	—	3.3	0.006	0.85	0.0	0.05	13.32	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.005	0.88	0.0	0.05	13.20	0.01	2.515	23.65	0.00	9.1	90.9	0.0	-1.97	1.57	0.79	0.62	—	6564	842	6	0	2	0	0	logfile
✔	7N98	24252	2025-04-26	2021-06-17	3.5	3.78	3.87	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.66	0.0	0.04	16.80	0.01	2.630	6.36	2.14	7.0	93.0	0.0	-0.03	0.48	0.50	0.81	1.33	3625	473	1	0	0	0	0	logfile
✔	7N9A	24253	2025-04-26	2021-06-17	3.5	2.68	—	2.4	0.007	1.29	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.004	0.72	0.0	0.05	15.36	0.01	2.499	15.13	5.43	4.5	95.5	0.0	-0.86	0.98	0.73	0.70	1.91	2431	312	2	0	0	0	0	logfile
✔	7F3U	31441	2025-04-27	2021-06-17	4.0	4.20	—	4.1	0.006	0.89	0.0	0.05	11.59	0.00	2.275	21.93	0.00	8.6	91.4	0.0	2.22	0.60	0.78	—	4.2	0.004	0.87	0.0	0.05	15.79	0.00	2.485	14.49	7.29	6.7	93.3	0.0	3.25	1.27	0.59	0.78	—	4274	656	2	0	0	0	0	logfile
✔	7N95	24250	2025-04-28	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.0	0.004	0.96	0.0	0.00	4.73	0.00	2.518	5.23	0.00	12.8	87.0	0.2	-2.89	1.75	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	7F3Q	31434	2025-04-28	2021-06-16	3.3	3.52	—	3.4	0.006	0.81	0.0	0.06	13.82	0.01	1.848	10.11	2.14	5.6	94.3	0.1	-0.94	0.81	0.84	3.49	3.4	0.004	0.68	0.0	0.04	15.60	0.00	2.341	5.85	3.05	5.0	95.0	0.0	-0.06	1.12	0.82	0.90	3.69	8003	1050	7	0	2	0	0	logfile
✔	7N8X	24248	2025-04-27	2021-06-16	3.4	3.65	—	3.6	0.003	0.73	0.0	0.05	13.27	0.01	2.153	9.30	0.00	10.1	89.3	0.6	-1.42	0.64	0.67	2.57	3.6	0.003	0.68	0.0	0.05	16.22	0.01	2.313	6.55	2.26	8.2	91.3	0.5	-1.10	0.47	0.66	0.70	2.25	6617	831	2	0	0	0	0	logfile
✔	7N8P	24241	2025-04-27	2021-06-15	3.42	3.72	—	3.7	0.005	0.89	0.0	0.05	14.42	0.01	2.276	4.27	0.29	5.9	94.1	0.0	-5.50	0.73	0.80	1.99	3.7	0.002	0.63	0.0	0.04	15.37	0.00	2.378	6.72	1.77	4.6	95.4	0.0	-0.32	0.38	0.69	0.83	0.98	6758	900	2	0	0	0	0	logfile
✔	7oVT	13089	2025-04-27	2021-06-15	2.69	2.94	2.42	2.8	0.017	1.67	0.0	0.10	13.71	0.01	2.550	2.09	0.00	3.0	97.0	0.0	-3.46	0.53	0.82	6.84	2.8	0.004	0.63	0.0	0.04	17.61	0.00	2.617	5.55	2.26	6.3	93.7	0.0	-3.88	0.49	0.57	0.86	6.53	6588	828	12	0	0	0	0	logfile
✔	7N88	24233	2025-04-30	2021-06-14	3.7	3.90	—	3.8	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.91	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.004	0.84	0.0	0.05	16.78	0.01	1.953	14.97	3.05	13.2	86.8	0.0	-3.54	0.52	0.73	0.71	1.49	9402	1220	3	0	4	0	0	logfile
✔	7N8i	24237	2025-04-26	2021-06-14	3.0	3.22	3.02	3.2	0.011	1.24	0.0	0.07	10.64	0.01	2.309	0.71	0.26	1.6	98.4	0.0	1.04	0.75	0.87	5.46	3.2	0.004	0.64	0.0	0.05	14.35	0.00	2.595	3.54	2.32	2.1	97.9	0.0	1.08	1.29	0.74	0.91	5.35	3600	445	4	0	5	0	0	logfile
✔	7F2o	31429	2025-04-29	2021-06-11	2.9	2.20	—	2.1	0.003	0.57	0.0	0.04	12.79	0.01	2.194	5.71	0.41	3.2	96.8	0.0	-0.75	0.70	0.68	3.19	2.0	0.003	0.67	0.0	0.04	16.01	0.00	2.408	10.19	3.05	2.6	97.4	0.0	0.65	0.65	0.75	0.76	2.54	9004	1150	6	0	0	0	0	logfile

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