Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oTi	13060	2025-04-30	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.004	0.86	0.0	0.05	14.37	0.01	2.429	17.55	0.00	7.6	91.9	0.4	-1.65	1.74	0.52	0.52	—	9171	1182	1	0	0	0	0	logfile
✔	7F29	31428	2025-04-26	2021-06-10	3.1	3.08	—	3.2	0.014	1.07	0.0	0.06	14.68	0.00	2.305	11.88	0.00	14.3	85.7	0.0	-3.96	0.42	0.83	5.02	3.2	0.002	0.61	0.0	0.05	14.60	0.00	2.628	3.68	0.00	11.4	88.6	0.0	-2.05	1.55	0.42	0.84	5.51	1794	222	18	0	18	0	0	logfile
✔	7F24	31427	2025-04-30	2021-06-10	4.16	4.05	—	4.0	0.009	1.05	0.0	0.06	15.53	0.01	2.076	24.77	0.65	5.1	94.8	0.1	-2.40	0.69	0.76	—	4.0	0.004	0.73	0.0	0.05	14.69	0.00	2.433	15.33	0.13	4.0	96.0	0.0	0.18	1.36	0.69	0.76	—	7165	900	6	0	2	0	0	logfile
✔	7N72	24217	2025-04-29	2021-06-09	2.5	3.08	2.56	2.9	0.010	1.35	0.0	0.06	13.13	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.003	0.85	0.0	0.04	14.17	0.00	1.633	5.47	0.80	1.8	98.2	0.0	2.16	0.42	0.68	0.84	2.89	7705	1030	2	0	11	5	0	logfile
✔	7N70	24214	2025-04-29	2021-06-09	2.8	3.43	2.92	3.3	0.011	0.73	0.0	0.05	13.22	0.01	2.109	7.93	0.00	1.6	98.4	0.0	0.27	0.74	0.85	2.88	3.3	0.003	0.56	0.0	0.04	15.00	0.00	1.466	5.88	1.85	1.8	98.2	0.0	1.89	0.44	0.63	0.77	2.06	7953	1032	2	0	4	0	0	logfile
✔	7F1Q	31422	2025-04-29	2021-06-09	2.9	3.05	—	3.1	0.002	0.55	0.0	0.04	12.03	0.00	2.264	10.21	0.27	2.6	97.4	0.0	-1.52	0.58	0.72	2.25	3.1	0.004	0.63	0.0	0.04	15.45	0.00	2.570	9.64	3.39	4.1	95.9	0.0	0.47	0.65	0.61	0.80	3.64	7123	938	4	0	0	0	0	logfile
✔	7oT9	13057	2025-04-29	2021-06-09	2.8	3.63	2.71	3.3	0.005	0.67	0.0	0.04	14.51	0.00	2.138	10.05	0.00	5.6	94.4	0.0	2.47	0.60	0.81	2.16	3.3	0.003	0.67	0.0	0.04	16.80	0.00	2.622	7.14	1.14	7.0	93.0	0.0	3.17	1.18	0.58	0.80	1.87	8410	1105	5	0	0	0	0	logfile
✔	7N78	24223	2025-04-29	2021-06-09	3.0	3.81	3.00	3.5	0.013	0.96	0.0	0.06	13.02	0.01	1.930	8.14	0.00	2.6	97.4	0.0	-1.34	0.71	0.83	3.03	3.5	0.002	0.57	0.0	0.04	13.55	0.00	2.028	5.06	1.23	1.4	98.6	0.0	2.24	0.43	0.64	0.76	1.90	7669	1030	2	0	11	3	0	logfile
✔	7N74	24219	2025-04-29	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	13.21	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.003	0.58	0.0	0.04	14.51	0.00	2.469	3.92	2.18	1.7	98.3	0.0	2.31	0.54	0.68	0.83	2.43	7859	1036	2	0	4	3	0	logfile
✔	7F1S	31424	2025-04-28	2021-06-09	2.8	3.44	—	3.2	0.002	0.55	0.0	0.04	10.91	0.00	2.228	9.48	0.00	3.5	96.5	0.0	-1.65	0.69	0.76	1.35	3.2	0.003	0.72	0.0	0.04	15.01	0.00	2.486	10.90	3.02	3.4	96.6	0.0	-0.16	1.18	0.70	0.81	2.16	6209	847	4	0	0	0	0	logfile
✔	7N73	24218	2025-04-29	2021-06-09	2.9	3.46	2.99	3.3	0.007	1.27	0.0	0.06	13.00	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.003	0.86	0.0	0.04	14.24	0.00	1.255	4.48	1.21	2.2	97.8	0.0	2.28	0.33	0.69	0.84	2.14	7866	1036	2	0	6	3	0	logfile
✔	7N75	24220	2025-04-28	2021-06-09	2.9	3.58	2.95	3.3	0.007	0.69	0.0	0.05	12.89	0.01	2.157	7.91	0.00	3.0	97.0	0.0	0.75	0.69	0.82	3.17	3.3	0.003	0.58	0.0	0.04	14.34	0.00	2.616	5.55	0.71	2.1	97.9	0.0	2.38	0.39	0.66	0.81	1.92	7381	1036	2	0	0	3	0	logfile
✔	7N77	24222	2025-04-28	2021-06-09	3.2	4.05	3.31	3.7	0.007	1.31	0.0	0.06	13.19	0.01	1.692	9.63	0.14	3.5	96.5	0.0	-1.56	0.64	0.74	1.92	3.7	0.002	0.89	0.0	0.04	13.74	0.00	1.120	4.85	1.69	1.7	98.3	0.0	2.07	1.62	0.68	0.82	0.99	7470	1036	2	0	4	2	0	logfile
✔	7F1R	31423	2025-04-28	2021-06-09	3.0	3.21	—	3.2	0.002	0.49	0.0	0.04	11.21	0.00	2.224	8.07	0.46	1.5	98.5	0.0	-2.21	0.59	0.70	1.80	3.2	0.003	0.69	0.0	0.04	15.28	0.00	2.552	9.70	3.36	3.8	96.2	0.0	0.51	1.23	0.62	0.79	2.42	6621	894	4	0	0	0	0	logfile
✔	7N62	24192	2025-04-27	2021-06-07	4.0	3.42	—	3.9	0.006	0.85	0.0	0.05	13.90	0.01	2.203	21.20	0.00	14.9	85.1	0.0	-2.74	0.73	0.81	—	3.9	0.004	0.82	0.0	0.05	15.93	0.01	2.411	13.05	2.76	10.6	89.4	0.0	-2.06	0.55	0.71	0.80	—	5613	712	4	0	5	0	0	logfile
✔	7N5A	24184	2025-04-30	2021-06-05	3.95	4.30	3.91	4.1	0.003	0.61	0.0	0.04	14.01	0.00	2.045	11.83	0.20	2.1	97.9	0.0	0.92	0.69	0.77	0.50	4.1	0.003	0.73	0.0	0.04	15.74	0.00	1.946	13.33	0.70	3.3	96.7	0.0	1.23	0.50	0.69	0.77	0.68	9254	1178	4	0	6	0	0	logfile
✔	7N58	24182	2025-04-30	2021-06-05	3.4	3.79	3.58	3.8	0.004	0.84	0.0	0.05	13.09	0.01	2.146	14.80	0.00	2.8	97.2	0.0	-0.83	0.61	0.67	1.16	3.8	0.003	0.62	0.0	0.04	16.04	0.00	2.573	8.52	1.69	3.9	96.1	0.0	0.91	0.54	0.64	0.71	0.96	9326	1200	2	0	0	0	0	logfile
✔	7N5G	24189	2025-04-26	2021-06-05	2.4	2.16	2.43	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.002	0.52	0.0	0.04	16.34	0.00	2.561	2.90	3.58	1.4	98.6	0.0	3.39	0.56	0.39	0.80	3.04	2926	371	2	0	1	0	0	logfile
✔	7N59	24183	2025-04-30	2021-06-05	3.6	4.16	3.74	4.1	0.004	0.62	0.0	0.04	14.74	0.00	2.221	7.04	0.10	2.1	97.9	0.0	1.69	0.69	0.81	1.10	4.1	0.003	0.53	0.0	0.04	16.11	0.00	2.510	5.97	1.41	2.2	97.8	0.0	2.54	0.36	0.70	0.81	0.83	9238	1180	3	0	1	0	0	logfile
✔	7N5B	24185	2025-04-30	2021-06-05	3.8	4.41	3.96	4.3	0.002	0.48	0.0	0.04	14.24	0.00	1.903	6.38	0.20	2.3	97.7	0.0	2.06	0.70	0.77	1.53	4.3	0.003	0.60	0.0	0.04	16.54	0.00	1.932	7.31	1.74	2.9	97.1	0.0	2.55	0.96	0.66	0.79	1.89	9122	1160	4	0	6	0	0	logfile

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