Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K77	36935	2025-04-29	2023-07-26	3.11	3.30	—	3.4	0.008	1.00	0.0	0.05	16.52	0.00	2.160	9.40	0.00	3.3	96.7	0.0	0.80	0.60	0.79	2.09	3.4	0.003	0.54	0.0	0.04	16.61	0.00	2.469	4.97	2.62	3.2	96.8	0.0	1.13	0.37	0.59	0.81	2.33	8192	1012	4	0	6	0	0	logfile
✔	8TKK	41354	2025-04-26	2023-07-25	3.37	4.30	3.34	3.8	0.002	0.32	0.0	0.01	24.68	0.00	2.004	6.57	0.00	0.0	0.0	0.0	—	0.88	0.83	—	3.8	0.008	0.78	0.0	0.04	25.07	0.01	1.910	22.84	0.00	0.0	0.0	0.0	—	0.29	0.88	0.85	—	2331	0	2	107	11	0	0	logfile
✔	8K6o	36925	2025-04-30	2023-07-25	3.3	2.34	3.28	3.2	0.002	0.58	0.0	0.04	12.87	0.00	2.255	6.19	0.10	1.8	98.2	0.0	2.01	0.72	0.65	2.18	2.2	0.002	0.59	0.0	0.04	15.80	0.00	2.529	6.03	2.34	2.7	97.3	0.0	1.61	0.74	0.75	0.76	2.10	9333	1183	6	0	0	0	0	logfile
✔	8K6M	36923	2025-04-30	2023-07-25	3.3	2.42	3.36	2.2	0.005	0.72	3.0	0.05	12.80	0.01	2.085	8.51	0.29	5.4	94.2	0.3	0.45	0.75	0.75	2.41	2.2	0.003	0.60	0.0	0.04	15.63	0.00	2.437	5.76	2.83	4.3	95.7	0.0	0.74	0.39	0.76	0.77	1.98	9327	1182	6	0	0	0	0	logfile
✔	8K69	36919	2025-04-28	2023-07-25	2.33	2.41	2.30	2.4	0.007	0.98	0.0	0.06	17.64	0.01	2.040	9.84	5.85	2.9	96.9	0.2	0.30	0.57	0.77	5.61	2.4	0.003	0.57	0.0	0.04	15.86	0.00	2.269	3.77	1.53	3.1	96.9	0.0	2.51	1.12	0.74	0.90	5.44	7744	916	6	0	18	126	0	logfile
✔	8K6L	36922	2025-04-27	2023-07-25	2.92	3.27	2.97	3.2	0.008	1.19	1.0	0.09	17.75	0.02	2.297	6.71	2.17	5.0	95.0	0.0	-2.44	0.63	0.80	2.79	3.2	0.003	0.67	0.0	0.05	15.26	0.00	2.557	2.20	2.65	3.0	97.0	0.0	1.59	0.57	0.61	0.82	3.09	4155	547	3	0	4	0	0	logfile
✔	8K6J	36920	2025-04-29	2023-07-25	2.77	3.51	2.83	3.3	0.030	1.64	0.0	0.49	17.76	0.01	2.130	8.32	2.49	4.1	95.9	0.0	0.88	0.76	0.86	3.44	3.3	0.005	1.41	0.0	0.06	17.21	0.00	1.792	6.83	1.81	3.8	96.2	0.0	0.97	0.27	0.74	0.84	3.49	8580	1087	5	0	6	0	0	logfile
✔	8K6K	36921	2025-04-29	2023-07-25	2.4	3.06	2.44	2.9	0.031	1.36	0.0	0.48	17.79	0.01	2.147	7.53	2.15	4.1	95.9	0.0	0.87	0.76	0.90	4.69	2.9	0.008	1.30	0.0	0.06	17.39	0.00	1.815	7.18	1.70	4.1	95.9	0.0	0.85	0.21	0.76	0.90	4.58	8593	1088	5	0	6	0	0	logfile
✔	8K66	36918	2025-04-28	2023-07-25	2.53	2.66	2.51	2.7	0.006	1.05	0.0	0.20	19.61	0.00	1.997	8.02	3.20	1.6	98.4	0.0	-0.42	0.77	0.89	4.68	2.7	0.002	0.52	0.0	0.04	15.77	0.00	2.284	5.50	1.66	2.2	97.8	0.0	2.55	1.14	0.71	0.89	5.10	7620	886	6	0	16	130	0	logfile
✔	8K6N	36924	2025-04-30	2023-07-25	3.2	2.28	3.18	2.1	0.004	0.66	0.0	0.05	13.23	0.00	2.211	11.71	0.10	5.7	94.3	0.0	0.15	0.71	0.69	2.33	2.1	0.005	0.97	1.0	0.04	15.54	0.00	2.470	11.12	2.65	5.8	94.2	0.0	0.05	0.33	0.72	0.72	1.99	9291	1186	6	0	0	0	0	logfile
✔	8TJX	41313	2025-04-28	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.63	0.0	0.04	23.99	0.01	1.834	9.77	0.00	0.0	0.0	0.0	—	0.82	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8TJU	41311	2025-04-30	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.74	0.0	0.04	24.75	0.01	1.785	25.20	0.00	0.0	0.0	0.0	—	0.47	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8TJV	41312	2025-04-30	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.010	0.74	0.0	0.04	23.67	0.01	1.072	11.68	0.00	0.0	0.0	0.0	—	0.94	0.92	0.93	—	8778	0	2	409	32	0	0	logfile
✔	8TJQ	41308	2025-04-30	2023-07-24	3.4	4.09	3.44	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.75	0.0	0.04	24.48	0.01	1.823	19.13	0.00	0.0	0.0	0.0	—	0.15	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8PXB	18002	2025-04-28	2023-07-23	3.6	4.63	3.69	4.2	0.002	0.45	0.0	0.04	9.09	0.00	2.259	7.28	0.46	3.6	96.4	0.0	2.65	0.54	0.61	-0.50	4.3	0.003	0.95	0.0	0.05	14.17	0.00	2.448	17.40	2.20	5.8	94.2	0.0	0.26	1.45	0.55	0.74	-0.47	8102	1018	2	0	0	0	0	logfile
✔	8K5G	36905	2025-04-27	2023-07-21	3.41	3.86	3.37	3.7	0.003	0.66	0.0	0.04	13.67	0.00	2.235	6.18	0.00	8.0	91.8	0.2	-2.07	0.68	0.85	2.82	3.7	0.003	0.69	0.0	0.04	15.83	0.00	2.525	5.43	3.27	7.3	92.5	0.2	-1.69	0.55	0.65	0.86	2.66	3381	431	3	0	0	0	0	logfile
✔	8K5D	36902	2025-04-26	2023-07-21	3.74	3.93	3.64	3.9	0.007	0.76	0.0	0.04	19.08	0.00	2.203	11.34	0.40	5.9	94.1	0.0	0.46	0.52	0.79	2.10	3.9	0.004	0.66	0.0	0.04	19.49	0.01	2.471	9.84	7.69	6.9	93.1	0.0	0.47	0.26	0.52	0.79	2.07	2345	291	2	0	1	0	0	logfile
✔	8K5B	36900	2025-04-26	2023-07-21	3.43	3.67	3.30	3.6	0.004	0.73	0.0	0.05	17.22	0.00	2.213	12.54	1.18	5.5	94.5	0.0	0.37	0.48	0.77	1.68	3.6	0.004	0.72	0.0	0.05	17.78	0.00	2.329	12.12	7.48	5.9	94.1	0.0	0.68	0.29	0.48	0.78	2.09	2374	291	2	0	1	0	0	logfile
✔	8K4P	36889	2025-04-28	2023-07-20	2.81	3.21	2.94	3.2	0.003	0.58	0.0	0.04	17.49	0.00	2.120	6.56	2.53	3.5	96.5	0.0	0.06	0.63	0.87	2.55	3.2	0.003	0.53	0.0	0.04	17.46	0.00	2.575	3.86	3.04	3.4	96.6	0.0	0.81	0.37	0.62	0.87	2.51	7231	918	4	0	0	0	0	logfile
✔	8K4U	36892	2025-04-27	2023-07-20	3.2	3.44	3.23	3.4	0.005	0.64	0.0	0.04	11.92	0.01	2.101	3.72	4.92	3.1	96.9	0.0	-4.11	0.71	0.78	3.40	3.4	0.006	0.90	0.0	0.04	15.33	0.01	2.242	13.11	4.49	3.6	96.4	0.0	-0.86	1.17	0.73	0.82	2.96	6323	778	3	0	1	0	0	logfile

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