Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K4P	36889	2025-04-28	2023-07-20	2.81	3.21	2.94	3.2	0.003	0.58	0.0	0.04	17.49	0.00	2.120	6.56	2.53	3.5	96.5	0.0	0.06	0.63	0.87	2.55	3.2	0.003	0.53	0.0	0.04	17.46	0.00	2.575	3.86	3.04	3.4	96.6	0.0	0.81	0.37	0.62	0.87	2.51	7231	918	4	0	0	0	0	logfile
✔	8TiF	41286	2025-04-26	2023-07-19	3.89	3.95	3.70	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.004	0.51	0.0	0.04	16.90	0.00	2.620	3.84	5.10	1.6	98.4	0.0	0.66	0.32	0.22	0.85	3.44	889	131	1	0	0	0	0	logfile
✔	8Ti8	41281	2025-04-28	2023-07-19	2.9	3.56	2.94	3.4	0.003	0.46	0.0	0.04	8.83	0.00	2.277	1.89	0.66	1.7	98.3	0.0	2.48	0.88	0.91	2.40	3.4	0.005	0.54	0.0	0.04	12.87	0.00	2.449	2.65	0.44	2.3	97.7	0.0	2.16	0.49	0.85	0.89	2.65	7887	976	4	0	0	0	0	logfile
✔	8TiB	41283	2025-04-26	2023-07-19	3.47	3.73	3.33	3.7	0.003	0.62	0.0	0.05	16.69	0.00	2.328	7.86	0.34	6.2	93.8	0.0	-1.60	0.32	0.87	1.51	3.7	0.002	0.49	0.0	0.04	16.87	0.00	2.508	5.67	5.10	4.9	94.8	0.3	-0.79	0.25	0.31	0.87	2.01	2667	393	3	0	0	0	0	logfile
✔	8PVV	17973	2025-04-28	2023-07-18	2.81	3.06	2.84	3.0	0.004	0.63	0.0	0.05	18.01	0.01	1.707	10.54	0.33	2.6	97.4	0.0	0.55	0.79	0.81	3.73	3.0	0.005	0.63	0.0	0.05	18.94	0.00	1.857	12.00	2.15	2.5	97.5	0.0	0.78	1.61	0.81	0.83	2.96	6477	656	9	50	1	36	0	logfile
✔	8K44	36872	2025-04-27	2023-07-17	3.8	4.00	3.76	3.9	0.003	0.53	0.0	0.04	10.43	0.00	2.227	14.98	0.41	1.8	98.2	0.0	0.62	0.65	0.80	2.30	3.9	0.003	0.77	0.0	0.04	14.60	0.00	2.518	11.33	6.34	1.6	98.4	0.0	0.06	0.64	0.66	0.81	1.52	6360	840	3	0	0	0	0	logfile
✔	8K3U	36861	2025-04-30	2023-07-17	3.06	3.51	3.22	3.5	0.009	1.07	0.0	0.06	16.05	0.00	2.072	18.03	0.73	5.9	94.0	0.2	-1.45	0.55	0.67	2.06	3.5	0.004	0.64	0.0	0.04	16.01	0.00	2.072	8.75	2.19	3.4	96.4	0.2	0.52	1.61	0.49	0.66	1.49	8914	1194	4	2	8	0	0	logfile
✔	8K3T	36859	2025-04-30	2023-07-17	3.57	4.21	3.74	4.1	0.009	0.93	0.0	0.05	15.00	0.00	2.225	12.40	1.12	4.5	95.5	0.0	0.41	0.60	0.77	1.00	4.1	0.004	0.59	0.0	0.04	15.67	0.00	2.093	7.64	2.57	2.8	97.2	0.0	1.75	1.20	0.59	0.76	0.53	9410	1254	4	2	6	0	0	logfile
✔	8K4B	36882	2025-04-30	2023-07-17	3.9	4.47	4.28	4.4	0.007	1.40	0.0	0.07	15.60	0.01	2.010	8.38	0.91	7.0	92.8	0.2	-3.82	0.66	0.75	1.21	4.4	0.003	0.83	0.0	0.04	16.78	0.00	1.957	12.02	3.23	6.1	93.9	0.0	-0.63	1.81	0.68	0.80	1.08	8918	1126	4	0	4	0	0	logfile
✔	8THR	41269	2025-04-26	2023-07-17	3.12	2.56	3.13	3.6	0.012	1.89	1.0	0.11	13.08	0.01	2.537	4.34	0.96	2.1	97.9	0.0	-3.14	0.77	0.75	2.62	3.6	0.004	0.89	0.0	0.05	15.22	0.01	2.427	12.37	3.83	3.6	96.4	0.0	-0.31	0.83	0.76	0.73	1.72	2937	389	2	0	1	0	0	logfile
✔	8K3Z	36869	2025-04-30	2023-07-17	2.81	2.96	2.74	2.9	0.003	0.63	0.0	0.04	17.24	0.00	2.284	7.59	3.48	4.3	95.7	0.0	0.05	0.63	0.87	3.75	2.9	0.003	0.58	0.0	0.04	17.06	0.00	2.515	4.06	2.32	4.3	95.7	0.0	0.60	1.24	0.70	0.90	3.57	9536	1217	6	0	0	0	0	logfile
✔	8K3J	36853	2025-04-30	2023-07-16	3.3	3.53	3.52	3.4	0.004	0.72	0.0	0.05	20.46	0.00	2.138	8.54	0.31	4.7	95.1	0.2	-0.34	0.80	0.79	2.17	3.4	0.004	0.76	0.0	0.05	17.65	0.00	2.328	5.93	4.24	5.2	94.7	0.2	-0.35	0.38	0.80	0.78	2.47	9108	1148	8	0	16	0	0	logfile
✔	8THi	41265	2025-04-30	2023-07-16	3.36	3.84	3.37	3.7	0.003	0.51	0.0	0.04	13.99	0.00	2.209	3.02	0.29	1.8	98.2	0.0	2.97	0.71	0.80	1.36	3.7	0.002	0.58	0.0	0.04	15.33	0.00	2.322	4.55	1.57	2.0	98.0	0.0	2.91	1.22	0.72	0.84	1.58	9519	1224	4	0	4	0	0	logfile
✔	8K3H	36851	2025-04-28	2023-07-15	2.86	2.80	2.66	2.8	0.003	0.52	0.0	0.04	15.58	0.00	2.237	4.01	0.00	2.1	97.9	0.0	0.44	0.76	0.89	3.98	2.8	0.002	0.51	0.0	0.04	15.46	0.00	2.591	3.47	0.92	2.0	98.0	0.0	1.61	0.29	0.77	0.90	3.86	7460	960	4	0	2	0	0	logfile
✔	8K3i	36852	2025-04-28	2023-07-15	2.83	2.47	2.67	2.7	0.007	0.67	0.0	0.04	13.37	0.01	2.060	6.04	0.00	2.8	97.2	0.0	0.64	0.74	0.87	4.43	2.8	0.003	0.52	0.0	0.04	15.72	0.00	2.641	4.39	1.58	2.1	97.9	0.0	1.76	0.90	0.72	0.88	3.33	7372	960	2	0	0	0	0	logfile
✔	8K34	36843	2025-04-28	2023-07-14	2.81	3.42	2.84	3.2	0.004	0.74	0.0	0.04	17.75	0.00	2.000	16.66	2.07	3.9	96.1	0.0	-0.23	0.68	0.68	1.79	3.2	0.004	0.69	0.0	0.04	18.00	0.00	1.997	13.94	3.23	4.4	95.6	0.0	-0.38	0.39	0.68	0.68	1.74	7187	863	4	4	1	0	0	logfile
✔	8K2X	36842	2025-04-30	2023-07-14	3.2	3.52	3.20	3.4	0.003	0.57	0.0	0.04	16.75	0.00	2.283	9.17	0.00	4.6	95.4	0.0	0.69	0.83	0.89	2.38	3.4	0.004	0.62	0.0	0.04	17.32	0.00	2.511	5.68	3.53	5.0	95.0	0.0	0.74	0.27	0.84	0.90	2.49	8900	1138	7	0	1	0	0	logfile
✔	8K2W	36841	2025-04-26	2023-07-14	3.0	3.14	2.97	3.2	0.007	0.90	0.0	0.04	15.07	0.02	2.294	5.99	0.00	4.2	95.8	0.0	0.73	0.56	0.80	2.41	3.2	0.003	0.59	0.0	0.04	16.50	0.00	2.611	5.04	2.57	4.5	95.5	0.0	1.00	0.47	0.55	0.81	1.73	3143	386	3	0	4	0	0	logfile
✔	8TGH	41236	2025-04-27	2023-07-12	3.5	2.39	3.44	2.2	0.007	0.81	0.0	0.05	17.21	0.01	2.269	16.16	0.98	2.5	97.5	0.0	0.62	0.79	0.82	2.22	2.2	0.003	0.66	0.0	0.04	16.28	0.01	2.614	4.42	3.58	2.9	97.1	0.0	2.20	0.73	0.78	0.79	2.24	5778	767	4	0	2	0	0	logfile
✔	8TGN	41242	2025-04-27	2023-07-12	3.3	2.50	3.28	2.9	0.005	0.97	0.0	0.05	18.68	0.01	2.195	28.85	0.49	1.3	98.5	0.1	0.16	0.71	0.73	1.69	2.9	0.005	1.12	1.0	0.05	17.40	0.01	2.205	12.75	3.92	2.1	97.9	0.0	1.40	0.36	0.72	0.73	1.28	5745	761	4	0	2	0	0	logfile

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