Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TGN	41242	2025-04-27	2023-07-12	3.3	2.50	3.28	2.9	0.005	0.97	0.0	0.05	18.68	0.01	2.195	28.85	0.49	1.3	98.5	0.1	0.16	0.71	0.73	1.69	2.9	0.005	1.12	1.0	0.05	17.40	0.01	2.205	12.75	3.92	2.1	97.9	0.0	1.40	0.36	0.72	0.73	1.28	5745	761	4	0	2	0	0	logfile
✔	8TGJ	41238	2025-04-27	2023-07-12	3.5	2.56	3.51	2.9	0.004	0.78	0.0	0.05	18.01	0.01	2.292	25.32	0.66	1.6	98.4	0.0	0.58	0.71	0.72	1.85	2.9	0.004	0.76	0.0	0.04	17.13	0.01	2.558	10.47	4.75	2.3	97.7	0.0	1.33	0.38	0.72	0.72	1.40	5720	761	3	0	1	0	0	logfile
✔	8TGG	41235	2025-04-27	2023-07-12	3.6	2.40	3.57	2.2	0.006	0.86	0.0	0.05	18.10	0.01	2.212	22.24	0.49	2.0	97.9	0.1	0.53	0.72	0.72	1.84	2.2	0.005	0.67	0.0	0.04	16.89	0.00	2.553	6.72	4.77	2.7	97.3	0.0	1.75	0.96	0.73	0.73	1.71	5717	758	4	0	2	0	0	logfile
✔	8TGK	41239	2025-04-27	2023-07-12	3.7	2.41	3.63	2.2	0.005	0.87	1.0	0.05	17.76	0.01	2.204	20.27	0.81	1.7	97.6	0.7	0.74	0.76	0.78	1.52	2.9	0.004	0.72	0.0	0.04	16.56	0.01	2.471	6.39	4.07	2.9	97.1	0.0	1.55	0.44	0.76	0.77	2.10	5772	766	4	0	2	0	0	logfile
✔	8PR4	17834	2025-04-30	2023-07-12	3.5	4.03	3.51	3.8	0.008	1.35	0.0	0.07	17.21	0.01	2.309	4.25	1.00	7.5	92.4	0.2	-3.40	0.81	0.80	1.91	3.8	0.003	0.65	0.0	0.04	16.43	0.00	2.371	7.57	3.57	5.4	94.6	0.0	0.46	0.39	0.82	0.82	1.76	9494	1322	8	0	4	0	0	logfile
✔	8K1o	36797	2025-04-28	2023-07-11	2.9	3.14	2.87	3.2	0.007	1.00	0.0	0.05	17.98	0.01	1.945	3.29	0.42	6.0	94.0	0.0	-1.93	0.62	0.85	3.48	3.2	0.003	0.59	0.0	0.04	17.05	0.00	1.987	2.27	2.12	4.6	95.4	0.0	0.12	0.96	0.66	0.88	2.63	7163	937	6	0	6	0	0	logfile
✔	8K1V	36805	2025-04-27	2023-07-11	3.48	3.80	3.22	3.9	0.001	0.31	0.0	0.03	13.71	0.00	2.283	2.43	0.00	0.6	99.4	0.0	5.96	0.54	0.76	1.54	3.9	0.003	0.60	0.0	0.04	14.72	0.00	2.490	4.50	2.70	1.7	98.3	0.0	4.89	0.74	0.53	0.79	2.25	4059	484	6	0	11	2	0	logfile
✔	8K1J	36793	2025-04-27	2023-07-11	3.0	3.30	3.04	3.4	0.001	0.34	0.0	0.03	13.84	0.00	2.296	2.67	0.00	0.4	99.6	0.0	5.90	0.58	0.77	0.99	3.3	0.003	0.51	0.0	0.04	14.80	0.00	2.514	2.55	1.47	1.7	98.3	0.0	4.77	0.58	0.61	0.83	1.11	4069	484	6	0	11	12	0	logfile
✔	8K1N	36796	2025-04-28	2023-07-11	3.0	3.28	2.95	3.3	0.008	1.24	6.0	0.07	15.25	0.01	2.218	9.86	0.70	8.5	91.5	0.0	-1.83	0.59	0.82	2.51	3.3	0.004	0.64	0.0	0.04	16.72	0.00	2.410	8.08	2.78	5.6	94.4	0.0	-0.07	1.75	0.62	0.86	2.49	7175	952	4	0	2	0	0	logfile
✔	8K1M	36795	2025-04-28	2023-07-11	2.9	3.42	2.90	3.3	0.007	1.08	3.0	0.06	14.61	0.01	2.303	4.19	0.42	8.3	91.7	0.0	-1.85	0.62	0.86	3.57	3.3	0.002	0.54	0.0	0.04	15.83	0.00	2.479	4.12	1.81	5.2	94.8	0.0	-0.18	0.48	0.55	0.82	2.54	7148	951	4	0	2	0	0	logfile
✔	8K1P	36798	2025-04-28	2023-07-11	3.4	3.64	3.32	3.6	0.007	0.86	0.0	0.05	16.58	0.01	2.062	5.37	0.14	7.6	92.4	0.0	-1.68	0.73	0.88	2.91	3.6	0.003	0.60	0.0	0.04	16.31	0.00	1.964	3.92	0.57	6.4	93.6	0.0	-0.14	0.39	0.67	0.88	2.67	7139	934	6	0	7	0	0	logfile
✔	8K20	36808	2025-04-30	2023-07-11	3.7	4.39	3.56	3.7	0.003	0.60	0.0	0.04	14.08	0.00	2.100	14.06	0.00	2.8	97.2	0.0	0.88	0.82	0.64	0.83	3.8	0.003	0.62	0.0	0.04	15.87	0.00	2.164	12.41	1.94	3.2	96.8	0.0	0.35	0.95	0.82	0.66	1.02	9356	1209	7	0	1	0	0	logfile
✔	8K1Z	36806	2025-04-27	2023-07-11	3.41	3.55	2.95	3.6	0.002	0.42	0.0	0.03	13.66	0.00	2.241	4.01	0.00	1.1	98.9	0.0	5.04	0.60	0.77	1.90	3.6	0.003	0.62	0.0	0.04	15.45	0.00	2.546	4.62	3.43	1.9	98.1	0.0	4.96	1.33	0.62	0.82	1.41	4059	484	6	0	11	2	0	logfile
✔	8K1Q	36799	2025-04-27	2023-07-11	3.68	3.98	3.57	3.9	0.004	0.50	0.0	0.03	14.13	0.00	2.337	4.50	0.25	1.3	98.7	0.0	4.91	0.59	0.76	1.71	3.9	0.003	0.54	0.0	0.04	15.85	0.00	2.546	1.95	2.70	2.1	97.9	0.0	4.81	2.32	0.61	0.81	1.63	4058	484	6	0	8	4	0	logfile
✔	8K0Z	36781	2025-04-29	2023-07-10	3.7	3.89	3.60	3.9	0.010	1.06	0.0	0.06	9.69	0.01	2.364	1.80	0.00	7.8	92.0	0.2	-6.16	0.68	0.83	2.81	3.9	0.003	0.73	0.0	0.04	14.54	0.00	2.550	3.83	1.30	5.6	94.4	0.0	-0.55	1.39	0.67	0.84	1.96	8484	1092	2	0	0	0	0	logfile
✔	8K11	36783	2025-04-27	2023-07-10	3.3	3.50	3.13	3.6	0.004	0.72	0.0	0.06	15.60	0.00	2.215	11.41	0.42	1.5	98.5	0.0	0.27	0.66	0.76	3.40	3.5	0.003	0.60	0.0	0.05	15.27	0.00	2.616	6.57	3.39	2.7	97.3	0.0	0.39	1.79	0.67	0.82	2.95	4402	526	8	0	16	0	0	logfile
✔	8K1B	36791	2025-04-27	2023-07-10	3.47	3.90	3.45	3.8	0.005	0.72	0.0	0.05	16.50	0.01	2.357	10.66	0.85	2.8	97.2	0.0	-1.31	0.65	0.71	2.02	3.9	0.007	0.83	0.0	0.05	17.14	0.00	2.481	14.05	5.13	4.6	95.4	0.0	-0.85	2.44	0.61	0.73	1.58	4176	508	4	0	6	0	0	logfile
✔	8PQ2	17819	2025-04-27	2023-07-10	3.85	4.01	3.64	3.9	0.002	0.51	0.0	0.04	10.37	0.00	2.133	5.53	2.73	8.3	91.7	0.0	-2.04	0.60	0.79	3.14	3.9	0.003	0.60	0.0	0.04	13.37	0.00	2.278	6.03	3.03	10.7	89.1	0.3	-2.31	0.57	0.60	0.80	3.04	5956	390	4	0	1	0	2891	logfile
✔	8K15	36786	2025-04-30	2023-07-10	2.58	2.79	2.59	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.009	0.92	0.0	0.05	24.71	0.01	1.744	4.48	0.00	0.0	0.0	0.0	—	0.29	0.68	0.82	—	10093	0	2	470	2	0	0	logfile
✔	8K17	36787	2025-04-30	2023-07-10	3.18	3.04	3.14	3.2	0.008	0.75	1.0	0.05	16.98	0.01	1.978	5.31	0.29	4.9	95.1	0.0	0.57	0.71	0.84	2.39	3.2	0.003	0.52	0.0	0.04	17.23	0.00	2.071	3.02	1.27	3.7	96.3	0.0	1.71	0.34	0.67	0.82	2.24	9748	1203	6	0	5	0	0	logfile

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