Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X79	38095	2024-05-10	2023-11-23	2.41	1.62	2.61	3.0	0.003	0.56	2.0	0.04	14.62	0.00	2.218	3.41	1.30	1.6	98.4	0.0	-0.03	0.62	0.80	3.50	2.9	0.004	0.58	0.0	0.04	17.18	0.00	2.019	6.44	2.71	2.6	97.4	0.0	1.29	2.53	0.61	0.84	3.70	16148	1055	6	0	1	0	7994	logfile
✔	8R6W	18967	2024-05-10	2023-11-23	3.35	3.41	3.33	2.9	0.005	0.79	0.0	0.04	18.61	0.00	2.217	6.64	9.45	7.9	92.0	0.2	-1.57	0.89	0.81	1.79	3.1	0.003	0.61	0.0	0.04	18.18	0.00	1.082	11.48	3.25	7.6	92.3	0.1	-0.53	1.13	0.90	0.83	1.87	16539	1974	5	40	1	0	0	logfile
✔	8V24	42897	2024-05-11	2023-11-21	3.6	3.75	3.54	3.8	0.004	0.63	1.0	0.04	20.51	0.00	1.879	8.74	0.48	5.7	94.1	0.2	0.06	0.62	0.77	2.14	3.8	0.003	0.46	0.0	0.04	17.74	0.00	1.887	9.84	1.62	5.5	94.3	0.2	0.59	0.32	0.64	0.78	2.00	19652	1253	8	0	8	0	9601	logfile
✔	8X64	38079	2024-05-06	2023-11-20	3.4	4.16	3.79	4.1	0.005	0.90	1.0	0.05	17.36	0.01	2.290	13.75	0.42	7.5	92.5	0.0	-0.76	0.45	0.61	2.20	4.1	0.005	0.84	0.0	0.04	18.19	0.01	2.112	13.30	5.44	8.6	91.4	0.0	-1.11	1.15	0.41	0.61	1.33	2189	263	2	0	1	0	0	logfile
✔	8R65	18947	2024-05-17	2023-11-20	4.23	6.20	4.47	4.4	0.005	0.62	1.0	0.05	14.38	0.01	1.637	11.45	1.85	6.7	92.8	0.5	-1.03	0.85	0.66	—	4.5	0.004	0.62	1.0	0.04	13.72	0.00	1.899	18.32	0.00	6.4	93.5	0.1	-1.10	1.87	0.88	0.74	—	35541	2196	6	23	0	0	17462	logfile
✔	8X5Y	38075	2024-05-06	2023-11-20	3.0	3.88	3.52	3.9	0.013	0.90	0.0	0.05	14.80	0.01	2.346	8.21	0.40	7.5	92.5	0.0	-0.78	0.38	0.58	2.00	3.9	0.005	0.79	0.0	0.04	17.13	0.00	2.177	9.94	2.81	7.8	92.2	0.0	-0.11	0.31	0.32	0.53	1.42	2292	274	2	0	1	0	0	logfile
✔	8X63	38078	2024-05-06	2023-11-20	3.2	4.09	3.72	4.5	0.005	0.74	1.0	0.05	15.26	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.004	0.74	0.0	0.04	17.26	0.01	2.293	9.87	2.85	7.6	92.4	0.0	-0.32	1.25	0.29	0.45	0.26	2252	270	2	0	1	0	0	logfile
✔	8X5X	38074	2024-05-06	2023-11-20	3.5	3.67	4.06	3.8	0.004	0.77	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.76	0.0	0.04	17.57	0.00	2.257	12.40	4.31	4.9	95.1	0.0	1.16	0.80	0.44	0.57	0.33	2105	256	1	0	0	0	0	logfile
✔	8X5D	38066	2024-05-11	2023-11-17	3.1	3.23	3.05	3.2	0.004	0.65	0.0	0.04	15.44	0.01	2.263	3.62	5.46	4.0	96.0	0.0	-5.02	0.78	0.87	3.03	3.2	0.002	0.57	0.0	0.04	16.48	0.00	2.075	6.63	3.54	4.1	95.9	0.0	-0.88	0.48	0.80	0.89	1.99	18477	2225	13	47	0	0	0	logfile
✔	8R5o	18935	2024-05-13	2023-11-17	2.49	2.13	—	1.4	0.002	0.45	0.0	0.04	11.77	0.00	2.042	4.11	0.44	2.7	97.2	0.0	0.35	0.83	0.86	5.83	1.4	0.005	0.60	0.0	0.05	15.23	0.01	1.988	5.46	1.32	3.2	96.8	0.0	0.79	0.68	0.84	0.87	5.50	54473	6680	41	0	3	255	0	logfile
✔	8X5i	38070	2024-05-10	2023-11-17	3.01	3.31	3.19	3.2	0.007	1.05	0.0	0.06	15.26	0.01	2.113	3.05	0.64	4.8	95.2	0.0	-3.57	0.69	0.85	3.46	3.2	0.005	0.62	0.0	0.04	16.21	0.00	2.007	5.75	2.22	4.7	95.3	0.0	-0.02	0.52	0.71	0.87	3.45	17006	2063	8	0	8	0	0	logfile
✔	8X51	38058	2024-05-07	2023-11-16	2.92	3.16	2.94	3.2	0.008	1.27	0.0	0.07	18.47	0.01	2.328	1.89	0.00	7.3	92.3	0.3	-3.65	0.56	0.76	3.45	3.2	0.003	0.68	0.0	0.04	20.66	0.00	2.178	6.73	2.58	6.5	93.1	0.3	-0.69	1.56	0.61	0.79	2.83	8095	885	6	42	2	0	0	logfile
✔	8R5H	18915	2024-05-08	2023-11-16	3.44	2.38	3.38	2.2	0.007	0.77	0.0	0.04	14.29	0.01	1.705	6.78	0.00	8.4	91.6	0.0	-0.55	0.74	0.71	2.34	2.2	0.003	0.63	0.0	0.04	16.22	0.00	2.203	7.56	2.18	8.1	91.9	0.0	-0.17	0.34	0.76	0.74	1.94	11277	1437	11	0	21	0	0	logfile
✔	8R57	18903	2024-05-13	2023-11-16	2.55	2.73	2.64	2.7	0.009	1.01	0.0	0.05	21.81	0.03	1.799	17.27	1.11	7.2	92.8	0.0	-1.66	0.79	0.81	2.29	2.7	0.004	0.81	0.0	0.04	21.67	0.01	1.789	12.08	3.14	5.3	94.7	0.0	-0.54	2.61	0.82	0.84	2.43	25048	1878	29	458	28	357	0	logfile
✔	8UZW	42845	2024-05-14	2023-11-16	2.69	3.11	2.90	3.1	0.012	0.86	0.0	0.04	15.67	0.01	2.141	9.07	0.71	2.8	97.2	0.0	0.78	0.65	0.81	2.60	3.1	0.002	0.50	0.0	0.04	16.25	0.00	2.138	9.72	1.78	2.3	97.7	0.0	0.94	0.24	0.60	0.78	2.50	28258	3713	10	0	0	0	0	logfile
✔	8UZJ	42841	2024-05-16	2023-11-15	2.3	2.36	2.20	2.3	0.012	1.11	0.0	0.06	17.82	0.01	2.237	2.18	0.00	1.8	98.2	0.0	-0.11	0.69	0.80	5.60	2.3	0.002	0.53	0.0	0.04	14.11	0.00	2.033	6.85	0.17	1.5	98.5	0.0	1.51	0.43	0.70	0.81	5.53	33030	1970	25	0	55	35	15835	logfile
✔	8X43	38041	2024-05-15	2023-11-15	3.0	3.27	3.12	3.3	0.005	0.92	0.0	0.03	17.02	0.00	1.965	12.43	0.38	3.8	96.2	0.0	2.23	0.54	0.70	2.13	3.3	0.004	0.65	0.0	0.03	17.72	0.00	2.045	9.91	2.71	3.4	96.6	0.0	2.67	0.80	0.60	0.76	2.07	30164	1880	12	0	4	0	14984	logfile
✔	8R4D	18886	2024-05-06	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.69	0.0	0.04	17.16	0.00	2.279	15.15	4.17	11.1	88.3	0.7	-2.52	0.39	0.52	0.59	2.35	3573	478	3	0	1	0	0	logfile
✔	8UYi	42807	2024-05-06	2023-11-13	3.13	3.34	3.23	3.4	0.004	0.67	0.0	0.04	12.68	0.00	2.057	4.03	1.08	2.1	97.9	0.0	-0.84	0.52	0.74	3.12	3.4	0.003	0.61	0.0	0.04	15.34	0.00	1.939	9.32	3.85	2.7	97.3	0.0	1.25	1.90	0.66	0.82	2.58	5980	738	4	0	6	0	0	logfile
✔	8R4B	18884	2024-05-07	2023-11-13	3.88	2.61	—	2.9	0.003	0.69	0.0	0.04	16.62	0.00	2.206	12.29	0.52	9.5	90.2	0.3	-2.78	0.76	0.69	1.44	2.9	0.004	0.77	0.0	0.05	17.17	0.00	2.181	14.26	6.66	8.6	91.0	0.4	-2.52	1.58	0.77	0.71	1.41	7600	1031	4	0	1	0	0	logfile

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