Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V6L	42995	2024-05-12	2023-12-01	3.68	3.99	3.86	3.9	0.004	0.63	0.0	0.04	16.49	0.00	2.001	8.76	5.12	13.4	86.6	0.0	-1.18	0.68	0.82	2.42	4.0	0.004	0.92	2.0	0.04	18.42	0.01	1.924	12.58	5.59	13.5	86.4	0.1	-1.48	4.77	0.71	0.84	1.40	22387	2612	8	0	27	0	0	logfile
✔	8RAS	19023	2024-05-14	2023-12-01	2.62	2.31	—	1.7	0.003	0.51	0.0	0.04	17.48	0.00	1.980	7.95	0.93	3.1	96.9	0.1	0.61	0.78	0.80	3.20	1.5	0.005	0.63	0.0	0.05	18.06	0.00	1.908	9.19	2.11	3.7	96.2	0.0	0.45	0.44	0.81	0.88	3.68	57315	6830	45	81	4	254	0	logfile
✔	8V6o	42998	2024-05-12	2023-12-01	2.83	3.17	2.98	3.2	0.009	1.36	0.0	0.04	20.28	0.01	2.290	4.32	0.35	5.5	94.5	0.0	-6.54	0.61	0.74	3.73	3.1	0.003	0.61	0.0	0.04	18.46	0.00	2.210	8.54	1.90	4.7	95.3	0.0	0.42	1.11	0.66	0.85	3.02	22683	2560	12	0	43	44	0	logfile
✔	8R8Q	19006	2024-05-06	2023-11-29	4.08	4.33	4.04	4.3	0.003	0.69	0.0	0.04	13.96	0.00	2.210	7.88	0.17	7.9	92.1	0.0	-1.26	0.66	0.79	—	4.3	0.003	0.69	0.0	0.04	13.83	0.00	2.156	9.10	0.00	7.9	92.1	0.0	-0.88	0.38	0.66	0.79	—	5702	732	3	0	5	0	0	logfile
✔	8R8D	18999	2024-05-07	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.67	0.0	0.05	14.75	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.005	0.73	0.0	0.05	15.12	0.01	2.151	9.07	3.03	5.1	94.9	0.0	0.15	0.31	0.68	0.82	3.22	7062	920	14	0	12	18	0	logfile
✔	8R8T	19009	2024-05-06	2023-11-29	2.9	2.36	2.72	2.8	0.002	0.53	0.0	0.04	15.73	0.00	2.207	5.29	0.00	2.6	97.4	0.0	1.06	0.60	0.83	3.21	2.8	0.003	0.59	0.0	0.04	16.12	0.00	2.261	7.56	2.26	2.4	97.6	0.0	1.88	1.20	0.59	0.83	2.25	3256	418	2	0	1	0	0	logfile
✔	8V4Y	42977	2024-05-15	2023-11-29	2.8	3.26	2.84	3.0	0.011	1.33	0.0	0.08	20.03	0.01	1.852	1.67	0.67	3.7	96.2	0.2	-1.09	0.81	0.68	4.37	3.0	0.004	0.62	0.0	0.04	24.13	0.00	1.858	3.09	0.95	4.2	95.7	0.2	1.52	2.11	0.90	0.88	3.39	29426	1219	12	294	3	0	13550	logfile
✔	8R8R	19008	2024-05-09	2023-11-29	2.79	3.75	2.74	3.2	0.002	0.50	0.0	0.04	13.00	0.00	2.275	2.10	0.00	3.3	96.7	0.0	-0.27	0.89	0.88	5.08	3.2	0.003	0.55	0.0	0.04	13.96	0.00	2.184	3.38	0.52	3.2	96.8	0.0	0.06	0.32	0.89	0.92	4.66	13089	1683	6	6	3	0	0	logfile
✔	8V3L	42949	2024-05-08	2023-11-28	4.3	3.45	4.78	4.3	0.003	0.63	0.0	0.04	12.02	0.00	2.209	12.35	0.00	2.7	97.2	0.1	1.47	0.25	0.63	—	4.2	0.003	0.61	0.0	0.04	13.08	0.00	2.180	12.75	0.00	4.2	95.7	0.1	0.97	1.58	0.25	0.65	—	11282	1359	2	0	0	0	0	logfile
✔	8X84	38135	2024-05-13	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.002	0.41	0.0	0.03	15.07	0.00	2.042	3.38	0.38	0.3	99.7	0.0	3.56	0.49	0.60	0.80	2.63	24534	1524	12	0	6	4	12444	logfile
✔	8X83	38134	2024-05-13	2023-11-27	2.8	2.86	2.94	3.0	0.005	0.60	0.0	0.03	14.83	0.00	1.974	4.85	1.22	1.3	98.7	0.0	2.34	0.59	0.79	2.50	3.0	0.003	0.43	0.0	0.03	15.41	0.00	2.033	5.26	0.99	0.9	99.1	0.0	3.42	0.50	0.58	0.79	2.76	24482	1520	12	0	6	4	12424	logfile
✔	8X82	38133	2024-05-09	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.40	0.0	0.03	16.97	0.00	2.209	5.36	1.45	1.3	98.7	0.0	3.58	0.37	0.62	0.82	2.78	12004	1520	4	0	0	0	0	logfile
✔	8V2Z	42938	2024-05-10	2023-11-25	2.72	3.50	2.78	3.2	0.005	0.78	0.0	0.05	15.42	0.01	2.186	3.79	0.51	3.1	96.9	0.0	-1.04	0.75	0.88	3.25	3.2	0.002	0.54	0.0	0.04	15.01	0.00	2.130	4.58	0.83	2.7	97.3	0.0	1.45	0.25	0.75	0.88	2.81	14635	1860	10	0	10	0	0	logfile
✔	8V30	42939	2024-05-10	2023-11-25	2.54	3.42	2.59	3.1	0.009	0.94	10.0	0.05	14.96	0.01	1.476	3.02	0.51	3.3	96.7	0.0	-1.20	0.74	0.87	3.73	3.1	0.003	0.57	0.0	0.04	14.24	0.00	2.031	5.76	0.38	2.8	97.2	0.0	1.44	0.25	0.75	0.89	3.69	14910	1890	15	0	15	0	0	logfile
✔	8X7U	38111	2024-05-14	2023-11-25	3.57	3.00	—	3.5	0.003	0.66	0.0	0.04	11.87	0.00	2.050	11.43	0.31	2.5	97.4	0.1	-3.75	0.80	0.74	1.42	3.5	0.003	0.59	0.0	0.04	14.39	0.00	1.968	10.88	2.23	3.1	96.8	0.1	-0.62	1.16	0.81	0.75	1.61	28832	3840	11	0	8	0	0	logfile
✔	8X7T	38109	2024-05-14	2023-11-25	3.26	2.44	—	3.2	0.002	0.63	0.0	0.04	10.71	0.00	2.206	16.31	0.38	3.2	96.7	0.1	-3.29	0.78	0.69	1.97	3.2	0.003	0.58	0.0	0.04	14.23	0.00	2.175	11.18	1.60	2.9	97.0	0.1	-0.29	0.64	0.82	0.75	1.85	28329	3753	6	0	0	0	0	logfile
✔	8X79	38095	2024-05-10	2023-11-23	2.41	1.62	2.61	3.0	0.003	0.56	2.0	0.04	14.62	0.00	2.218	3.41	1.30	1.6	98.4	0.0	-0.03	0.62	0.80	3.50	2.9	0.004	0.58	0.0	0.04	17.18	0.00	2.019	6.44	2.71	2.6	97.4	0.0	1.29	2.53	0.61	0.84	3.70	16148	1055	6	0	1	0	7994	logfile
✔	8V2o	42918	2024-05-10	2023-11-23	2.45	3.28	2.53	3.0	0.004	0.80	0.0	0.05	15.84	0.01	2.253	3.92	0.70	2.8	97.2	0.0	-1.34	0.76	0.89	3.74	3.0	0.004	0.88	1.0	0.05	14.42	0.00	1.672	6.57	0.89	2.8	97.1	0.1	1.07	0.27	0.76	0.89	3.95	14660	1860	10	0	10	0	0	logfile
✔	8R6Y	18969	2024-05-10	2023-11-23	3.4	3.66	3.41	3.5	0.007	0.74	0.0	0.05	16.45	0.00	2.029	5.59	3.38	4.7	95.3	0.0	-0.60	0.85	0.85	2.11	3.5	0.005	0.63	0.0	0.04	17.42	0.00	0.973	10.51	3.67	6.3	93.7	0.0	-0.04	1.02	0.86	0.86	2.01	16665	1991	6	37	3	0	0	logfile
✔	8R6U	18963	2024-05-09	2023-11-23	2.98	2.77	3.03	3.0	0.007	0.73	0.0	0.05	17.13	0.01	1.964	4.89	6.46	6.6	93.4	0.0	-1.04	0.74	0.87	3.08	3.0	0.002	0.57	0.0	0.04	17.37	0.00	2.035	6.82	2.39	4.9	95.1	0.0	-0.04	0.91	0.73	0.85	2.34	13408	1566	6	43	1	0	0	logfile

• ← previous
• Page 10 of 592
• next →