Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XBH	38218	2024-05-07	2023-12-06	2.83	2.95	2.88	3.0	0.004	0.70	0.0	0.04	13.23	0.00	2.151	10.57	0.00	3.8	96.1	0.1	0.30	0.49	0.70	2.33	3.1	0.003	0.68	0.0	0.04	16.57	0.00	2.174	11.87	2.36	3.7	96.2	0.1	0.38	0.51	0.52	0.74	1.75	8947	1137	6	0	1	0	0	logfile
✔	8V88	43030	2024-05-16	2023-12-05	2.3	2.36	2.26	2.3	0.033	0.98	0.0	0.06	18.17	0.01	2.299	3.68	0.00	3.6	96.4	0.0	-0.70	0.73	0.84	4.91	2.3	0.003	0.65	0.0	0.04	18.27	0.00	2.128	5.22	0.34	1.6	98.4	0.0	0.89	0.38	0.73	0.86	4.86	33190	1970	25	0	60	100	15865	logfile
✔	8RBX	19038	2024-05-16	2023-12-05	4.1	4.04	3.99	7.7	0.007	0.91	2.0	0.07	18.74	0.01	2.138	5.09	0.56	4.8	95.2	0.0	-0.02	0.71	0.32	—	3.0	0.010	1.06	1.0	0.05	16.40	0.01	1.822	33.06	0.00	6.7	93.1	0.2	-0.59	1.81	0.77	0.55	—	129226	16906	56	326	76	0	0	logfile
✔	8V8D	43035	2024-05-15	2023-12-05	3.31	2.50	3.43	3.4	0.012	1.07	0.0	0.06	13.25	0.01	2.196	4.47	0.12	3.4	96.6	0.0	-1.57	0.66	0.72	3.33	3.3	0.003	0.55	0.0	0.04	14.04	0.00	2.057	7.36	0.82	3.3	96.7	0.0	0.26	0.69	0.70	0.77	3.02	30774	1886	15	0	33	0	15085	logfile
✔	8V8C	43034	2024-05-15	2023-12-05	3.29	2.54	3.42	3.3	0.012	1.09	1.0	0.06	13.74	0.01	2.198	6.39	0.06	4.0	96.0	0.0	-1.75	0.69	0.75	3.32	3.3	0.004	0.57	0.0	0.04	14.36	0.00	2.047	8.36	0.65	3.0	97.0	0.0	0.19	0.60	0.70	0.79	3.52	30630	1879	15	0	33	0	15011	logfile
✔	8V89	43031	2024-05-16	2023-12-05	2.53	2.23	2.64	2.3	0.008	0.98	0.0	0.06	15.42	0.01	2.287	4.68	0.56	4.1	95.9	0.0	-1.75	0.63	0.80	5.26	2.3	0.004	0.61	0.0	0.04	15.68	0.00	1.974	7.50	1.73	1.6	98.4	0.0	1.14	0.46	0.65	0.83	5.08	32725	1970	25	0	40	70	15855	logfile
✔	8V8A	43032	2024-05-17	2023-12-05	2.19	1.99	2.21	2.0	0.012	1.16	0.0	0.06	19.81	0.01	2.220	4.07	0.56	2.1	97.9	0.0	-0.64	0.67	0.80	6.21	2.0	0.003	0.56	0.0	0.04	15.93	0.00	2.035	8.48	0.67	1.5	98.5	0.0	1.10	1.90	0.68	0.82	5.81	33560	1970	25	0	65	155	15935	logfile
✔	8V86	43025	2024-05-16	2023-12-04	2.47	2.51	2.39	2.5	0.031	0.95	0.0	0.06	18.45	0.01	2.384	4.87	0.00	3.6	96.4	0.0	-1.05	0.67	0.81	4.37	2.5	0.003	0.64	0.0	0.04	17.80	0.00	2.120	5.63	0.95	1.9	98.1	0.0	0.72	0.34	0.72	0.85	4.25	33020	1970	25	0	50	65	15835	logfile
✔	8XAJ	38200	2024-05-09	2023-12-04	3.29	3.52	4.38	3.4	0.009	1.09	0.0	0.05	16.78	0.01	1.547	16.03	0.00	11.3	88.7	0.0	-1.52	0.68	0.76	2.25	3.4	0.003	0.70	0.0	0.04	17.32	0.01	2.217	12.76	2.18	9.9	90.1	0.0	-0.71	1.13	0.64	0.74	2.01	11668	1410	3	0	7	0	0	logfile
✔	8V80	43012	2024-05-16	2023-12-04	2.34	2.34	2.25	2.3	0.014	1.16	0.0	0.07	17.79	0.01	2.331	3.29	0.00	2.8	97.2	0.0	-1.28	0.69	0.79	5.40	2.3	0.003	0.60	0.0	0.04	14.54	0.00	2.127	6.92	0.62	1.7	98.3	0.0	0.73	1.59	0.69	0.80	5.19	33080	1970	25	0	60	55	15835	logfile
✔	8V7L	43003	2024-05-13	2023-12-04	2.9	3.39	2.93	3.1	0.010	1.36	0.0	0.08	21.51	0.01	2.316	1.99	2.32	3.6	96.2	0.3	-1.48	0.76	0.57	3.23	3.1	0.003	0.56	0.0	0.03	25.37	0.00	1.865	14.36	1.16	3.7	96.2	0.1	0.65	1.56	0.86	0.80	2.73	25545	1203	12	280	2	0	10096	logfile
✔	8V82	43015	2024-05-16	2023-12-04	2.61	2.68	2.57	2.7	0.012	1.10	0.0	0.06	19.23	0.01	2.199	2.18	0.00	3.1	96.9	0.0	-1.47	0.67	0.79	4.20	2.7	0.003	0.55	0.0	0.04	15.26	0.00	1.995	8.87	0.62	2.3	97.7	0.0	0.16	1.18	0.69	0.81	4.37	33265	1970	25	0	65	45	15825	logfile
✔	8RBo	19033	2024-05-14	2023-12-04	3.02	4.07	3.43	3.8	0.003	0.56	0.0	0.04	17.24	0.00	2.081	9.33	0.07	2.2	97.8	0.0	0.49	0.60	0.44	0.47	3.7	0.006	0.80	0.0	0.05	17.69	0.01	2.025	17.62	2.10	3.6	96.4	0.0	0.09	1.42	0.87	0.83	2.01	26368	3290	15	0	6	0	0	logfile
✔	8V85	43023	2024-05-06	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.7	0.004	0.91	0.0	0.05	14.10	0.00	2.188	40.22	1.16	5.1	94.9	0.0	-1.38	3.71	0.33	0.26	0.83	1539	197	1	0	0	0	0	logfile
✔	8V83	43017	2024-05-13	2023-12-04	2.53	2.26	2.50	2.5	0.004	0.54	0.0	0.04	19.88	0.01	2.155	6.60	0.91	2.4	97.6	0.0	1.34	0.54	0.75	3.58	2.4	0.005	0.63	0.0	0.04	21.10	0.01	2.024	9.10	2.17	2.8	97.2	0.0	1.07	1.19	0.56	0.78	3.17	119224	8913	50	2223	2	0	0	logfile
✔	8V84	43021	2024-05-14	2023-12-04	2.7	2.27	2.68	2.7	0.003	0.47	0.0	0.04	19.22	0.00	2.053	6.12	0.30	2.2	97.8	0.0	1.54	0.49	0.71	2.89	2.6	0.005	0.71	0.0	0.04	20.95	0.01	1.835	9.04	2.23	3.3	96.7	0.0	0.57	1.64	0.52	0.76	2.80	121244	9275	53	2179	3	0	0	logfile
✔	8RB7	19027	2024-05-06	2023-12-03	3.2	3.80	3.05	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.56	0.0	0.03	17.84	0.01	2.007	8.72	0.96	2.5	97.5	0.0	2.16	2.08	0.28	0.76	1.47	5848	360	2	0	0	0	2948	logfile
✔	8RB5	19026	2024-05-07	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.002	0.55	0.0	0.03	17.49	0.00	2.233	8.44	1.71	2.4	97.6	0.0	2.04	1.43	0.30	0.80	2.10	8772	540	3	0	0	0	4422	logfile
✔	8RB4	19025	2024-05-10	2023-12-02	3.2	3.79	3.35	3.7	0.014	1.83	0.0	0.10	14.38	0.02	2.509	0.68	0.51	3.4	96.6	0.0	-1.19	0.47	0.73	1.91	3.7	0.004	0.63	0.0	0.04	17.49	0.00	1.923	12.45	2.95	2.5	97.3	0.2	1.21	2.24	0.49	0.79	1.49	14620	900	5	0	0	0	7370	logfile
✔	8RAS	19023	2024-05-14	2023-12-01	2.62	2.31	—	1.7	0.003	0.51	0.0	0.04	17.48	0.00	1.980	7.95	0.93	3.1	96.9	0.1	0.61	0.78	0.80	3.20	1.5	0.005	0.63	0.0	0.05	18.06	0.00	1.908	9.19	2.11	3.7	96.2	0.0	0.45	0.44	0.81	0.88	3.68	57315	6830	45	81	4	254	0	logfile

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