Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Uo1	42424	2024-05-07	2023-10-19	3.6	3.92	3.71	3.9	0.006	0.92	0.0	0.06	13.48	0.00	2.233	5.01	0.18	2.1	97.9	0.0	0.78	0.65	0.83	2.48	3.9	0.002	0.50	0.0	0.04	14.83	0.00	2.179	4.31	2.76	1.6	98.4	0.0	1.12	0.40	0.66	0.83	2.52	6915	1006	6	0	3	0	0	logfile
✔	8UNT	42416	2024-05-07	2023-10-19	3.4	3.76	3.55	3.7	0.005	0.81	0.0	0.05	14.50	0.00	2.232	5.13	0.32	1.4	98.6	0.0	1.29	0.64	0.84	2.66	3.7	0.003	0.50	0.0	0.04	14.99	0.00	2.132	3.65	1.46	1.6	98.4	0.0	1.42	0.37	0.65	0.85	2.65	6712	913	6	0	2	1	0	logfile
✔	8UNX	42420	2024-05-07	2023-10-19	3.6	3.87	3.64	3.9	0.006	0.96	0.0	0.06	13.81	0.01	2.177	5.50	0.00	2.3	97.7	0.0	1.34	0.63	0.82	2.78	3.9	0.002	0.52	0.0	0.04	14.66	0.00	2.265	4.56	1.51	1.6	98.4	0.0	1.67	0.40	0.65	0.83	2.09	6688	923	6	0	2	0	0	logfile
✔	8UNW	42419	2024-05-07	2023-10-19	3.4	3.74	3.49	3.7	0.005	0.92	0.0	0.06	15.25	0.00	2.214	4.77	0.16	1.7	98.3	0.0	0.86	0.63	0.84	3.25	3.7	0.002	0.50	0.0	0.04	15.33	0.00	2.166	3.44	2.43	1.4	98.6	0.0	1.08	0.32	0.64	0.86	2.54	6647	900	6	0	2	1	0	logfile
✔	8Uo0	42423	2024-05-07	2023-10-19	3.5	4.01	3.77	4.0	0.006	0.93	0.0	0.06	13.94	0.01	2.268	5.98	0.21	2.5	97.5	0.0	1.21	0.61	0.80	1.82	4.0	0.002	0.47	0.0	0.04	14.54	0.00	2.278	3.98	2.46	1.9	98.1	0.0	1.79	0.35	0.63	0.81	1.59	6222	902	6	0	2	0	0	logfile
✔	8WTZ	37847	2024-05-10	2023-10-19	3.1	3.40	3.16	3.4	0.006	0.85	2.0	0.06	18.20	0.01	1.650	12.99	2.15	1.5	98.0	0.6	0.13	0.59	0.77	1.87	3.4	0.004	0.63	0.0	0.04	17.50	0.00	2.142	9.64	2.02	2.2	97.7	0.1	1.33	1.38	0.56	0.78	1.71	14930	1778	8	0	15	0	0	logfile
✔	8UNU	42417	2024-05-07	2023-10-19	3.5	3.84	3.62	3.8	0.005	0.83	0.0	0.05	14.14	0.00	2.227	6.74	0.50	1.5	98.5	0.0	1.67	0.63	0.83	2.91	3.8	0.003	0.50	0.0	0.04	15.22	0.00	2.282	4.01	2.52	1.6	98.4	0.0	1.51	0.38	0.64	0.84	2.62	6514	890	6	0	2	0	0	logfile
✔	8UNQ	42413	2024-05-07	2023-10-19	3.3	3.68	3.44	3.7	0.004	0.77	0.0	0.05	13.49	0.00	2.218	3.68	0.33	1.4	98.6	0.0	1.09	0.61	0.83	2.97	3.7	0.002	0.46	0.0	0.04	14.66	0.00	2.260	3.83	1.15	1.2	98.8	0.0	1.54	0.33	0.64	0.86	2.67	6687	915	6	0	2	1	0	logfile
✔	8UNZ	42422	2024-05-07	2023-10-19	3.8	4.17	3.92	4.1	0.005	0.81	0.0	0.06	13.67	0.00	2.238	4.96	0.00	2.4	97.6	0.0	1.00	0.61	0.78	1.40	4.1	0.002	0.50	0.0	0.04	14.40	0.00	2.185	4.29	0.93	1.8	98.2	0.0	0.90	0.34	0.66	0.82	1.23	6329	898	6	0	2	0	0	logfile
✔	8UMP	42381	2024-05-12	2023-10-18	2.92	3.27	3.11	3.3	0.007	0.74	0.0	0.04	19.06	0.01	2.226	7.20	0.69	0.4	99.6	0.0	1.18	0.67	0.87	4.31	3.3	0.003	0.49	0.0	0.04	18.83	0.00	2.243	8.01	2.66	1.0	99.0	0.0	3.61	0.37	0.69	0.88	3.87	21432	2724	24	0	0	0	0	logfile
✔	8QVW	18674	2024-05-06	2023-10-18	3.0	3.25	3.07	3.2	0.003	0.60	0.0	0.04	18.02	0.00	2.155	14.69	0.23	4.3	95.7	0.0	1.25	0.75	0.76	1.70	3.2	0.003	0.69	0.0	0.04	18.59	0.00	2.180	13.80	3.00	5.0	95.0	0.0	1.13	1.22	0.73	0.76	2.13	3918	492	2	0	0	0	0	logfile
✔	8UMX	42387	2024-05-07	2023-10-18	4.0	5.63	3.86	4.0	0.003	0.77	0.0	0.04	17.12	0.00	2.173	17.66	0.50	5.0	94.9	0.1	-0.01	0.52	0.81	—	4.0	0.002	0.73	0.0	0.04	17.36	0.00	2.157	16.08	2.39	4.1	95.7	0.1	0.58	1.74	0.54	0.85	—	7166	906	6	0	0	0	0	logfile
✔	8WTD	37832	2024-05-07	2023-10-18	3.06	3.33	3.05	3.4	0.005	0.90	7.0	0.05	18.48	0.00	2.232	8.87	0.72	5.3	93.9	0.8	-0.02	0.53	0.80	1.75	3.4	0.004	0.58	0.0	0.04	17.94	0.00	2.133	8.40	2.31	5.2	94.7	0.1	0.42	0.97	0.60	0.85	2.30	6456	790	3	0	4	0	0	logfile
✔	8UMR	42382	2024-05-11	2023-10-18	4.42	5.02	4.78	4.6	0.004	0.82	0.0	0.05	12.52	0.01	2.052	27.72	0.00	2.7	97.3	0.0	-0.03	0.83	0.77	—	4.6	0.003	0.77	0.0	0.04	13.35	0.01	2.027	24.85	0.00	4.0	96.0	0.0	-0.02	1.13	0.84	0.82	—	18615	2364	21	0	0	0	0	logfile
✔	8UN1	42390	2024-05-12	2023-10-18	3.9	4.40	4.25	4.3	0.014	1.17	0.0	0.05	16.24	0.01	2.085	21.08	0.47	5.1	94.9	0.0	-0.76	0.71	0.65	0.23	4.3	0.004	0.82	0.0	0.05	17.18	0.01	2.091	18.02	4.30	4.6	95.4	0.0	-0.11	2.91	0.75	0.75	0.54	22091	2904	21	0	0	0	0	logfile
✔	8WTJ	37835	2024-05-15	2023-10-18	4.64	6.17	5.24	4.7	0.003	0.85	0.0	0.05	14.83	0.01	2.239	9.97	0.03	8.6	91.3	0.0	-2.46	0.84	0.80	—	4.7	0.010	0.74	0.0	0.04	14.47	0.01	2.088	28.62	0.03	11.0	88.9	0.0	-2.07	0.45	0.83	0.60	—	29931	3793	4	0	0	0	0	logfile
✔	8UMD	42376	2024-05-07	2023-10-17	3.6	4.61	3.60	3.7	0.003	0.72	0.0	0.04	16.78	0.01	2.098	13.27	0.50	4.9	94.8	0.3	0.54	0.50	0.80	0.85	3.7	0.003	0.76	0.0	0.04	17.13	0.00	2.101	16.96	3.26	4.9	94.8	0.3	0.75	1.76	0.51	0.85	0.71	7201	911	6	0	0	0	0	logfile
✔	8WRZ	37795	2024-05-07	2023-10-16	3.6	3.01	3.76	2.2	0.010	0.95	0.0	0.05	12.85	0.01	2.192	18.51	0.13	5.7	94.3	0.0	-0.57	0.68	0.68	0.98	2.2	0.003	0.81	0.0	0.05	16.29	0.00	2.139	18.15	5.01	4.8	95.2	0.0	-0.26	1.60	0.69	0.69	1.11	6914	874	6	0	1	0	0	logfile
✔	8ULG	42358	2024-05-10	2023-10-16	3.2	4.33	3.21	3.6	0.003	0.56	0.0	0.04	18.17	0.00	2.079	5.55	0.06	3.7	96.3	0.1	1.30	0.93	0.87	2.23	3.6	0.002	0.55	0.0	0.04	18.03	0.00	2.066	7.47	1.13	3.5	96.5	0.0	1.54	1.42	0.94	0.89	1.87	14635	1789	6	0	8	0	0	logfile
✔	8WRM	37781	2024-05-15	2023-10-15	4.34	4.58	4.54	4.2	0.004	0.89	0.0	0.05	14.47	0.01	2.196	7.52	0.03	8.4	91.5	0.1	-2.50	0.80	0.76	—	4.2	0.003	0.66	0.0	0.04	14.26	0.00	2.093	17.10	0.12	9.4	90.5	0.1	-1.48	0.71	0.81	0.78	—	29931	3793	4	0	0	0	0	logfile

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