Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WRL	37779	2024-05-07	2023-10-15	3.36	3.59	3.33	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.7	0.003	0.51	0.0	0.04	17.32	0.00	2.222	8.85	4.18	3.7	96.3	0.0	0.43	0.34	0.52	0.77	1.34	6472	790	4	0	5	0	0	logfile
✔	8WRM	37781	2024-05-15	2023-10-15	4.34	4.58	4.54	4.2	0.004	0.89	0.0	0.05	14.47	0.01	2.196	7.52	0.03	8.4	91.5	0.1	-2.50	0.80	0.76	—	4.2	0.003	0.66	0.0	0.04	14.26	0.00	2.093	17.10	0.12	9.4	90.5	0.1	-1.48	0.71	0.81	0.78	—	29931	3793	4	0	0	0	0	logfile
✔	8WRH	37776	2024-05-07	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.52	0.0	0.04	17.71	0.00	2.098	7.68	1.30	5.0	95.0	0.0	0.95	0.88	0.59	0.82	1.94	6459	790	3	0	4	0	0	logfile
✔	8UKM	42355	2024-05-13	2023-10-14	4.2	4.65	4.50	4.5	0.004	0.75	0.0	0.05	13.15	0.01	2.220	21.35	0.00	4.5	95.5	0.0	0.17	0.81	0.81	—	4.5	0.003	0.72	0.0	0.05	13.20	0.01	2.230	19.03	0.00	4.9	95.1	0.0	0.28	0.57	0.82	0.82	—	26184	3528	24	0	0	0	0	logfile
✔	8WRB	37771	2024-05-07	2023-10-13	2.91	3.14	3.03	3.2	0.002	0.49	0.0	0.04	9.42	0.00	2.218	4.00	1.06	1.3	98.7	0.0	1.02	0.57	0.80	3.66	3.2	0.003	0.51	0.0	0.04	13.39	0.00	2.063	6.52	3.27	1.7	98.3	0.0	1.85	1.16	0.57	0.81	2.90	8842	1135	6	0	2	0	0	logfile
✔	8WQR	37752	2024-05-08	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.004	0.69	0.0	0.05	14.11	0.00	2.144	15.84	2.60	8.4	91.4	0.1	-2.82	0.45	0.82	0.69	1.46	9681	1415	2	0	0	0	0	logfile
✔	8WQF	37743	2024-05-15	2023-10-11	3.27	3.60	3.33	3.6	0.004	0.60	0.0	0.04	14.92	0.00	2.199	8.04	0.00	6.4	93.6	0.0	-0.93	0.60	0.57	2.34	3.6	0.003	0.58	0.0	0.04	16.85	0.00	2.172	12.33	1.77	6.0	94.0	0.0	-0.12	0.98	0.73	0.82	1.84	23404	2901	13	0	6	0	0	logfile
✔	8WQG	37744	2024-05-16	2023-10-11	4.09	4.33	4.11	4.2	0.003	0.60	0.0	0.04	14.75	0.00	2.082	10.99	0.03	6.6	93.4	0.0	-0.87	0.79	0.74	—	4.2	0.007	0.81	0.0	0.05	14.58	0.00	1.925	24.20	0.00	7.8	92.0	0.1	-0.96	1.38	0.80	0.74	—	26832	3393	14	0	6	0	0	logfile
✔	8WQi	37746	2024-05-06	2023-10-11	3.5	3.71	3.53	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.004	0.67	0.0	0.04	16.80	0.00	2.077	14.72	2.37	10.5	89.5	0.0	-0.75	0.52	0.66	0.82	0.91	5074	644	2	0	0	0	0	logfile
✔	8WQC	37739	2024-05-16	2023-10-11	3.54	3.77	3.57	3.7	0.003	0.58	0.0	0.04	14.71	0.00	2.135	9.58	0.07	5.6	94.4	0.0	-1.33	0.78	0.76	1.75	3.7	0.004	0.66	0.0	0.04	16.39	0.00	2.033	15.54	1.81	6.3	93.7	0.0	-0.47	0.96	0.79	0.79	1.55	26832	3393	14	0	6	0	0	logfile
✔	8WQE	37742	2024-05-16	2023-10-11	3.38	3.75	3.42	3.7	0.003	0.56	0.0	0.04	14.84	0.00	2.173	8.55	0.07	5.1	94.9	0.0	-0.73	0.72	0.71	2.00	3.7	0.004	0.59	0.0	0.04	16.59	0.00	1.472	13.24	2.45	5.6	94.4	0.0	0.01	1.00	0.77	0.82	1.79	26301	3275	14	0	6	0	0	logfile
✔	8WQB	37737	2024-05-16	2023-10-11	3.37	3.62	3.41	3.6	0.003	0.64	0.0	0.04	14.73	0.00	2.043	7.37	0.00	5.9	94.1	0.0	-1.53	0.74	0.74	2.31	3.6	0.004	0.60	0.0	0.04	16.48	0.00	2.049	13.10	2.07	6.1	93.8	0.0	0.09	0.52	0.78	0.84	1.92	26255	3265	13	0	6	0	0	logfile
✔	8WQH	37745	2024-05-16	2023-10-11	3.44	3.76	3.60	3.7	0.003	0.54	0.0	0.04	14.59	0.00	2.051	8.46	0.00	5.1	94.9	0.0	-0.88	0.78	0.81	2.08	3.7	0.003	0.57	0.0	0.04	16.23	0.00	2.055	12.37	1.50	5.3	94.7	0.0	0.30	0.66	0.80	0.84	1.87	24811	3091	14	0	6	0	0	logfile
✔	8WQD	37740	2024-05-06	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.004	1.08	1.0	0.05	16.68	0.00	2.237	11.99	2.55	7.1	92.9	0.0	0.58	0.30	0.67	0.83	1.88	5046	641	2	0	0	0	0	logfile
✔	8WQA	37736	2024-05-16	2023-10-11	3.39	3.69	3.48	3.6	0.003	0.64	0.0	0.04	14.89	0.00	2.059	9.55	0.14	4.9	95.1	0.0	-0.70	0.79	0.79	2.00	3.6	0.003	0.57	0.0	0.04	16.20	0.00	2.041	12.32	1.54	5.0	95.0	0.0	0.38	0.34	0.78	0.76	1.77	26479	3301	14	0	6	0	0	logfile
✔	8QSK	18634	2024-05-07	2023-10-10	3.3	3.77	3.34	3.6	0.003	0.63	0.0	0.04	12.96	0.01	2.235	7.41	1.59	6.9	92.9	0.2	1.79	0.77	0.75	0.74	3.6	0.003	0.62	0.0	0.04	14.51	0.00	2.185	7.87	3.41	7.2	92.8	0.0	2.18	0.86	0.79	0.79	1.62	8506	1046	4	0	16	0	0	logfile
✔	8WPP	37722	2024-05-10	2023-10-10	3.1	3.23	3.06	3.2	0.005	0.84	0.0	0.05	17.00	0.01	2.245	5.50	0.06	3.0	97.0	0.0	-1.85	0.70	0.74	2.73	3.2	0.003	0.60	1.0	0.04	18.31	0.00	2.171	14.18	1.77	3.4	96.6	0.0	0.16	0.51	0.72	0.82	2.82	16826	1909	9	69	0	0	0	logfile
✔	8QSL	18635	2024-05-07	2023-10-10	2.81	3.65	2.98	3.5	0.004	0.67	0.0	0.04	15.58	0.00	1.968	13.05	0.12	8.7	91.3	0.0	1.51	0.61	0.78	1.49	3.5	0.004	0.91	0.0	0.05	15.65	0.00	2.186	12.59	3.17	7.1	92.9	0.0	1.06	1.17	0.58	0.77	1.09	8506	1046	4	0	16	0	0	logfile
✔	8UiP	42301	2024-05-06	2023-10-10	4.3	2.81	4.26	5.6	0.004	0.79	0.0	0.04	16.55	0.01	2.087	25.91	0.00	13.1	86.9	0.0	-2.49	0.41	0.55	—	6.5	0.003	0.75	0.0	0.04	14.27	0.00	2.242	21.73	0.00	9.1	90.9	0.0	-2.42	2.11	0.41	0.51	—	2316	303	3	0	0	0	0	logfile
✔	8WPG	37716	2024-05-09	2023-10-10	2.7	2.92	—	3.0	0.004	0.60	0.0	0.04	16.88	0.00	2.163	9.08	0.08	4.2	95.8	0.0	-0.13	0.64	0.80	3.33	2.9	0.004	0.58	0.0	0.04	16.82	0.00	2.156	8.41	3.82	4.6	95.4	0.0	-0.08	0.27	0.65	0.81	3.25	12443	1608	10	0	21	0	0	logfile

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