Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EZ7	28729	2025-05-10	2022-10-31	2.6	2.82	2.63	2.8	0.004	0.73	0.0	0.05	18.25	0.00	2.185	8.01	1.32	3.4	96.6	0.0	-0.10	0.51	0.85	3.91	2.8	0.003	0.61	0.0	0.04	15.60	0.00	2.489	7.28	2.07	3.7	96.3	0.0	-0.12	0.25	0.49	0.84	3.85	4927	624	5	0	9	0	0	logfile
✔	8BHM	16060	2025-05-26	2022-10-31	2.95	3.91	2.95	3.5	0.002	0.37	0.0	0.04	8.67	0.00	2.258	1.80	0.00	0.9	99.1	0.0	2.44	0.76	0.84	4.06	3.5	0.004	0.56	0.0	0.04	10.43	0.00	2.378	3.52	0.67	2.6	97.4	0.0	2.12	0.72	0.74	0.82	4.09	27180	1680	10	0	10	0	13415	logfile
✔	8BHB	16051	2025-05-25	2022-10-30	2.54	3.17	2.70	3.0	0.003	0.42	0.0	0.04	7.20	0.02	2.149	2.09	0.00	0.9	99.1	0.0	2.13	0.73	0.88	5.71	3.0	0.002	0.48	0.0	0.04	12.88	0.00	2.410	2.38	1.34	2.3	97.7	0.0	2.07	0.65	0.72	0.88	5.04	27250	1680	15	0	10	65	13415	logfile
✔	8HBN	34638	2025-05-09	2022-10-29	3.81	4.36	3.77	4.0	0.007	1.24	5.0	0.06	18.57	0.01	2.254	13.99	6.10	7.4	90.0	2.7	-1.66	0.66	0.81	1.11	4.0	0.003	0.78	0.0	0.04	18.04	0.00	2.501	7.11	3.92	6.2	93.4	0.4	-0.44	1.54	0.66	0.83	1.51	4189	536	2	0	0	0	0	logfile
✔	8EYY	28724	2025-05-20	2022-10-29	4.9	6.21	5.37	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.05	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.003	0.61	0.0	0.04	13.31	0.00	2.394	15.72	0.00	6.8	93.1	0.1	-1.15	1.15	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	8EZ0	28725	2025-05-18	2022-10-29	3.7	4.09	3.79	3.9	0.004	0.63	0.0	0.04	15.91	0.00	2.130	13.69	0.12	7.3	92.7	0.0	-1.65	0.85	0.82	2.02	3.9	0.003	0.62	0.0	0.04	16.56	0.00	2.513	8.69	2.30	6.3	93.7	0.0	-1.46	1.16	0.84	0.81	1.95	14640	1815	6	0	0	0	0	logfile
✔	8BGU	16036	2025-05-10	2022-10-28	4.1	5.77	3.96	4.0	0.003	0.84	0.0	0.04	23.47	0.00	2.235	4.09	0.00	5.0	95.0	0.0	-2.58	0.92	0.86	—	4.0	0.008	0.88	0.0	0.05	24.49	0.00	1.980	36.56	0.00	14.5	85.5	0.0	-2.29	2.46	0.93	0.88	—	4779	447	5	121	1	0	0	logfile
✔	8BGW	16041	2025-05-15	2022-10-28	2.2	1.96	2.23	2.2	0.016	2.06	2.0	0.09	19.30	0.02	1.923	16.69	3.84	6.1	93.4	0.5	-3.60	0.68	0.80	5.25	2.2	0.008	0.79	0.0	0.04	16.33	0.00	1.859	14.85	1.11	4.2	95.8	0.0	1.06	0.43	0.76	0.84	4.70	12927	1500	6	0	25	449	0	logfile
✔	8BGV	16039	2025-05-09	2022-10-28	3.27	3.26	3.17	3.4	0.009	1.72	0.0	0.10	12.41	0.01	2.452	0.84	1.49	6.7	93.3	0.0	-3.78	0.46	0.89	5.03	3.3	0.005	0.74	0.0	0.05	13.92	0.00	2.533	3.23	1.92	6.1	93.9	0.0	-2.78	1.30	0.41	0.87	3.57	4109	539	7	0	0	0	0	logfile
✔	8HBH	34632	2025-05-12	2022-10-28	3.1	3.30	—	3.3	0.009	0.84	0.0	0.05	15.29	0.01	2.007	10.23	0.90	3.2	96.8	0.0	-0.10	0.68	0.78	2.79	3.3	0.005	0.58	0.0	0.04	15.66	0.00	1.135	6.92	3.25	2.1	97.9	0.0	0.90	0.30	0.72	0.82	2.52	8502	1099	4	0	5	0	0	logfile
✔	8BGS	16035	2025-05-09	2022-10-28	3.16	3.15	2.98	3.3	0.009	1.64	0.0	0.10	13.08	0.01	2.368	1.46	0.00	6.8	93.2	0.0	-3.72	0.43	0.86	5.04	3.3	0.003	0.68	0.0	0.05	15.23	0.00	2.614	3.54	1.73	1.2	98.8	0.0	-2.80	1.31	0.36	0.80	3.01	4018	525	7	0	0	0	0	logfile
✔	8HBF	34627	2025-05-12	2022-10-28	3.1	3.32	—	3.3	0.011	0.84	1.0	0.05	15.94	0.01	1.951	9.76	0.46	3.2	96.6	0.2	-0.23	0.73	0.82	2.61	3.3	0.004	0.60	0.0	0.04	16.24	0.00	2.002	7.60	1.93	2.6	97.4	0.0	1.21	0.30	0.73	0.82	2.69	8448	1095	4	0	6	0	0	logfile
✔	8EYR	28693	2025-05-15	2022-10-28	4.0	4.25	4.09	4.0	0.005	0.76	0.0	0.05	17.46	0.01	2.099	23.63	0.27	11.5	88.3	0.2	-2.62	0.86	0.82	—	4.0	0.003	0.69	0.0	0.05	17.77	0.00	2.528	12.82	5.09	8.3	91.5	0.2	-2.10	0.43	0.86	0.82	—	13635	1705	4	0	0	0	0	logfile
✔	8HBE	34623	2025-05-12	2022-10-28	3.2	3.29	—	3.4	0.008	0.73	0.0	0.05	15.14	0.00	2.217	8.96	0.00	3.5	96.5	0.0	-0.20	0.65	0.79	2.27	3.3	0.003	0.57	0.0	0.04	15.79	0.00	2.607	6.79	1.53	2.4	97.6	0.0	1.12	1.07	0.65	0.80	2.02	8610	1114	3	0	1	0	0	logfile
✔	8HBD	34619	2025-05-12	2022-10-28	2.99	2.40	2.80	3.0	0.003	0.71	0.0	0.04	16.47	0.00	1.912	13.34	1.85	3.8	96.0	0.2	0.26	0.74	0.76	1.67	2.2	0.004	0.73	0.0	0.04	17.45	0.00	2.470	12.65	4.58	4.0	96.0	0.0	0.19	0.61	0.77	0.80	2.04	8803	1158	6	0	0	0	0	logfile
✔	8EYK	28691	2025-05-17	2022-10-27	2.7	3.20	2.66	3.0	0.013	1.00	0.0	0.05	16.76	0.00	2.171	10.91	1.25	2.1	97.9	0.0	0.16	0.76	0.82	3.29	3.0	0.005	0.63	0.0	0.04	16.57	0.00	2.386	9.71	1.71	1.9	98.1	0.0	0.20	0.30	0.76	0.82	3.21	15386	2036	4	0	6	0	0	logfile
✔	8BG9	16027	2025-05-09	2022-10-27	3.5	3.74	2.07	4.0	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.0	0.003	0.66	0.0	0.05	16.03	0.00	2.612	4.87	3.57	3.8	96.2	0.0	-3.95	1.00	0.39	0.81	5.05	1692	222	6	0	0	0	0	logfile
✔	8EYH	28688	2025-05-25	2022-10-27	3.75	3.73	—	3.7	0.006	0.75	0.0	0.06	15.75	0.00	2.055	50.94	2.85	9.5	89.6	0.9	-2.52	0.50	0.67	1.71	3.7	0.005	0.78	0.0	0.05	14.60	0.00	2.375	14.03	3.57	10.2	89.5	0.3	-2.50	0.56	0.51	0.69	1.20	26575	3342	12	0	34	0	0	logfile
✔	8EYG	28686	2025-05-26	2022-10-27	3.73	3.64	—	3.6	0.004	0.63	0.0	0.05	15.16	0.01	2.112	12.55	0.63	8.6	90.9	0.6	-1.88	0.54	0.73	2.36	3.6	0.005	0.71	0.0	0.05	14.17	0.00	2.302	11.06	3.50	9.7	90.0	0.3	-1.77	0.47	0.54	0.71	2.09	27485	3460	14	0	37	0	0	logfile
✔	8EYi	28690	2025-05-18	2022-10-27	2.7	3.30	2.69	3.1	0.017	0.98	0.0	0.05	16.32	0.01	2.204	10.69	2.06	2.0	98.0	0.0	0.27	0.80	0.81	2.89	3.1	0.005	0.60	0.0	0.04	16.29	0.00	2.401	9.43	2.12	2.0	98.0	0.0	0.53	0.25	0.80	0.82	3.02	16252	2172	4	0	4	0	0	logfile

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