Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BG9	16027	2025-05-09	2022-10-27	3.5	3.74	2.07	4.0	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.0	0.003	0.66	0.0	0.05	16.03	0.00	2.612	4.87	3.57	3.8	96.2	0.0	-3.95	1.00	0.39	0.81	5.05	1692	222	6	0	0	0	0	logfile
✔	8HB0	34610	2025-05-10	2022-10-27	2.9	2.62	2.76	2.7	0.017	2.31	4.0	0.09	13.36	0.00	2.153	6.66	0.80	3.9	95.9	0.2	-2.30	0.57	0.82	3.78	2.7	0.004	0.72	0.0	0.04	14.84	0.00	2.211	8.33	1.40	1.8	98.2	0.0	2.10	0.54	0.61	0.83	3.95	4778	615	3	0	3	4	0	logfile
✔	8HAF	34587	2025-05-13	2022-10-26	3.25	2.28	3.09	2.2	0.003	0.82	0.0	0.07	16.06	0.00	1.671	7.15	0.40	2.8	97.2	0.0	0.83	0.70	0.74	2.25	2.1	0.004	0.81	0.0	0.07	16.39	0.00	1.679	6.48	3.39	3.5	96.5	0.0	0.99	0.52	0.77	0.80	2.86	9681	1167	7	0	17	0	0	logfile
✔	8EY2	28666	2025-05-10	2022-10-26	3.5	3.71	3.54	3.8	0.003	0.60	0.0	0.04	13.04	0.00	2.149	14.08	0.00	5.8	94.2	0.0	-0.29	0.78	0.80	2.62	3.7	0.006	0.79	0.0	0.05	16.06	0.00	2.371	15.62	2.20	8.1	91.9	0.0	-1.24	1.12	0.80	0.82	1.91	4908	634	4	0	0	0	0	logfile
✔	8HAM	34596	2025-05-18	2022-10-26	4.5	4.52	4.31	3.7	0.003	0.56	0.0	0.03	25.16	0.00	2.260	9.62	0.00	1.4	98.6	0.0	2.08	0.84	0.77	—	3.7	0.003	0.59	0.0	0.03	26.34	0.00	2.391	10.82	0.00	2.0	98.0	0.0	2.36	1.63	0.87	0.83	—	17177	1288	11	330	0	0	0	logfile
✔	8HAE	34586	2025-05-25	2022-10-26	4.55	4.75	4.65	4.6	0.009	1.04	0.0	0.07	10.84	0.01	1.994	6.14	0.27	8.3	91.7	0.0	-3.55	0.81	0.75	—	4.6	0.002	0.71	2.0	0.12	11.72	0.00	2.337	4.72	0.00	6.4	93.6	0.0	-1.60	1.30	0.80	0.74	—	26698	1690	2	0	0	0	13272	logfile
✔	8HAK	34594	2025-05-17	2022-10-26	4.5	4.61	4.45	3.6	0.003	0.65	0.0	0.04	24.74	0.00	2.214	12.85	0.00	2.2	97.8	0.0	0.55	0.87	0.75	—	3.6	0.004	0.66	0.0	0.04	26.00	0.00	2.322	14.11	0.00	2.5	97.5	0.0	0.86	0.77	0.89	0.81	—	16342	1285	11	292	0	0	0	logfile
✔	8HAN	34597	2025-05-17	2022-10-26	4.2	4.31	4.14	3.3	0.003	0.54	0.0	0.03	24.99	0.00	2.219	8.41	0.00	1.1	98.9	0.0	2.88	0.83	0.72	—	2.9	0.006	0.68	0.0	0.04	26.70	0.00	2.470	17.70	0.00	3.3	96.7	0.0	1.88	0.82	0.86	0.80	—	16180	1261	11	294	0	0	0	logfile
✔	8HAT	34608	2025-05-18	2022-10-26	3.03	3.41	3.20	3.4	0.009	1.51	21.0	0.08	19.56	0.01	1.173	39.65	5.43	16.5	79.2	4.3	-4.89	0.53	0.58	0.77	3.4	0.003	0.90	0.0	0.05	18.85	0.01	2.437	14.45	5.75	14.3	85.0	0.7	-3.67	1.66	0.57	0.65	0.85	16967	2206	6	0	0	0	0	logfile
✔	8HAS	34607	2025-05-18	2022-10-26	2.89	3.13	2.97	3.1	0.009	1.23	5.0	0.06	20.79	0.01	2.141	9.91	6.98	3.9	95.7	0.4	-1.95	0.67	0.78	1.50	3.1	0.002	0.63	0.0	0.05	19.06	0.00	2.471	5.42	4.58	4.6	95.3	0.1	-1.71	0.44	0.64	0.78	2.47	16640	2141	12	0	6	0	0	logfile
✔	8HA0	34585	2025-05-13	2022-10-26	2.62	2.14	2.52	2.0	0.009	0.79	2.0	0.05	13.58	0.01	1.689	11.43	4.53	2.2	97.2	0.6	-0.68	0.76	0.78	2.69	2.0	0.004	0.61	0.0	0.04	15.61	0.00	2.537	4.11	3.42	3.4	96.4	0.3	1.53	1.30	0.79	0.83	3.88	9385	1155	7	0	7	0	0	logfile
✔	8HAG	34588	2025-05-17	2022-10-26	3.2	3.77	3.22	2.6	0.003	0.56	0.0	0.03	24.83	0.00	2.220	10.62	0.00	1.7	98.3	0.0	2.13	0.85	0.78	0.67	2.3	0.005	0.62	0.0	0.04	26.38	0.00	2.410	10.49	1.27	2.2	97.8	0.0	1.92	1.45	0.89	0.87	1.80	16367	1284	11	294	0	0	0	logfile
✔	8HAJ	34592	2025-05-18	2022-10-26	4.8	4.66	4.64	3.6	0.003	0.60	0.0	0.03	24.86	0.00	2.213	11.34	0.00	2.3	97.7	0.0	1.21	0.88	0.76	—	3.6	0.004	0.61	0.0	0.04	26.00	0.00	2.342	13.37	0.00	2.7	97.3	0.0	1.80	0.71	0.89	0.79	—	17214	1305	11	326	0	0	0	logfile
✔	8HAH	34589	2025-05-18	2022-10-26	3.9	5.19	3.80	2.8	0.003	0.55	0.0	0.03	24.02	0.00	2.274	8.74	0.00	2.6	97.4	0.0	1.59	0.83	0.62	0.32	2.8	0.003	0.66	0.0	0.04	26.57	0.00	2.440	11.83	1.35	2.6	97.4	0.0	1.30	2.48	0.91	0.80	0.78	17096	1287	11	328	0	0	0	logfile
✔	8EXY	28665	2025-05-25	2022-10-26	3.2	4.03	3.40	3.5	0.005	0.62	0.0	0.04	22.95	0.01	2.020	5.39	20.94	9.4	89.8	0.8	-3.15	0.87	0.84	1.62	3.5	0.004	0.62	0.0	0.04	19.91	0.00	1.931	4.79	3.35	4.8	95.1	0.1	-0.46	0.70	0.90	0.89	1.64	25711	3033	10	105	4	0	0	logfile
✔	8HAL	34595	2025-05-18	2022-10-26	4.4	3.43	4.31	3.4	0.003	0.63	0.0	0.04	24.76	0.00	2.187	12.41	0.00	1.7	98.3	0.0	1.26	0.85	0.73	—	2.9	0.005	0.72	0.0	0.04	27.00	0.01	2.300	17.94	0.00	3.4	96.6	0.0	0.28	2.71	0.87	0.80	—	16585	1292	11	302	0	0	0	logfile
✔	8HAo	34598	2025-05-19	2022-10-26	3.76	3.06	3.49	3.8	0.003	0.51	0.0	0.04	15.90	0.00	1.785	5.73	0.40	2.9	96.9	0.2	1.91	0.58	0.52	-0.03	3.8	0.004	0.87	0.0	0.05	17.50	0.01	2.376	15.61	4.57	4.8	95.2	0.0	0.54	1.22	0.64	0.70	1.04	18479	2314	12	0	0	0	0	logfile
✔	8HAi	34591	2025-05-18	2022-10-26	4.7	4.54	4.59	4.0	0.003	0.58	0.0	0.03	24.52	0.00	2.249	10.79	0.00	1.5	98.5	0.0	1.74	0.83	0.72	—	4.0	0.005	0.68	0.0	0.04	26.03	0.00	2.435	15.63	0.00	2.3	97.7	0.0	1.63	1.65	0.86	0.80	—	16547	1310	11	294	0	0	0	logfile
✔	8BFN	16020	2025-05-30	2022-10-26	3.52	3.09	3.52	3.3	0.005	0.67	0.0	0.04	19.10	0.00	1.921	45.20	0.48	5.6	94.2	0.2	0.87	0.67	0.79	1.58	3.3	0.004	0.77	0.0	0.04	19.39	0.00	2.317	13.61	4.33	5.7	94.2	0.1	0.39	0.56	0.65	0.79	1.42	33400	4164	14	0	4	0	0	logfile
✔	8HAU	34609	2025-05-17	2022-10-26	3.02	3.24	3.04	3.3	0.006	0.62	8.0	0.05	17.46	0.01	1.876	23.57	0.46	2.0	98.0	0.0	0.97	0.58	0.65	0.40	3.3	0.003	0.60	0.0	0.04	17.40	0.00	2.522	4.76	3.45	3.2	96.8	0.0	-0.30	1.65	0.63	0.76	1.74	16157	2080	12	0	6	0	0	logfile

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