Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EXQ	28659	2025-05-12	2022-10-25	4.9	5.40	5.62	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.73	0.0	0.04	12.88	0.00	2.544	15.16	0.00	3.7	96.3	0.0	-0.63	2.50	0.57	0.62	—	9304	1108	4	0	2	0	0	logfile
✔	8EXP	28658	2025-05-12	2022-10-25	4.2	4.47	4.30	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.69	0.0	0.04	13.46	0.00	2.350	12.36	0.00	4.3	95.7	0.0	0.64	1.09	0.64	0.70	—	9024	1078	4	0	2	0	0	logfile
✔	8H9G	34566	2025-05-09	2022-10-25	2.95	3.31	3.17	3.3	0.008	0.77	0.0	0.05	14.93	0.01	2.278	10.74	0.00	5.8	94.2	0.0	-2.39	0.34	0.81	2.01	3.3	0.003	0.61	0.0	0.04	17.65	0.00	2.568	5.37	3.66	3.9	96.1	0.0	2.55	0.91	0.33	0.81	2.02	3381	421	3	0	0	0	0	logfile
✔	8H9N	34574	2025-05-09	2022-10-25	3.56	3.82	3.61	3.7	0.007	0.88	0.0	0.05	15.25	0.01	2.178	14.62	0.00	5.6	94.4	0.0	-2.28	0.36	0.77	1.69	3.7	0.003	0.73	0.0	0.04	17.92	0.01	2.440	11.34	2.82	3.9	96.1	0.0	2.42	1.11	0.36	0.77	1.69	3381	421	3	0	0	0	0	logfile
✔	8H9P	34576	2025-05-23	2022-10-25	3.02	3.32	3.11	3.3	0.006	0.79	0.0	0.05	14.27	0.01	1.976	9.01	0.12	3.0	97.0	0.1	-2.96	0.71	0.86	3.44	3.3	0.003	0.60	0.0	0.04	15.89	0.00	2.007	6.80	1.49	2.1	97.9	0.0	0.41	1.55	0.70	0.87	2.51	23418	3057	13	0	10	0	0	logfile
✔	8H9E	34564	2025-05-23	2022-10-25	2.53	2.86	2.56	2.9	0.008	0.80	0.0	0.05	14.54	0.01	1.956	5.74	0.00	2.7	97.2	0.1	-1.86	0.75	0.89	4.37	2.9	0.004	0.58	0.0	0.04	16.56	0.00	1.935	4.97	1.64	1.9	98.1	0.0	0.97	0.82	0.65	0.88	3.59	24214	3162	14	0	10	0	0	logfile
✔	8EX9	28655	2025-05-10	2022-10-25	2.96	3.27	2.99	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.004	0.59	0.0	0.03	23.86	0.00	2.499	11.21	3.97	5.6	94.4	0.0	-0.74	0.24	0.62	0.72	4.25	4199	166	4	139	0	0	0	logfile
✔	8H9R	34578	2025-05-09	2022-10-25	3.97	4.28	4.04	4.0	0.006	0.79	0.0	0.05	15.25	0.00	2.244	16.26	0.00	6.1	93.9	0.0	-1.99	0.38	0.80	0.71	4.0	0.003	0.73	0.0	0.04	17.98	0.00	2.538	10.44	1.41	3.6	96.4	0.0	2.30	1.06	0.38	0.79	0.51	3381	421	3	0	0	0	0	logfile
✔	8H9J	34569	2025-05-14	2022-10-25	3.26	3.64	3.37	3.6	0.010	0.85	0.0	0.05	13.20	0.01	2.233	13.39	0.00	3.8	96.2	0.0	-3.26	0.64	0.81	2.37	3.6	0.003	0.65	0.0	0.04	16.02	0.00	2.523	9.32	3.03	1.9	98.1	0.0	1.87	0.98	0.59	0.80	1.67	12082	1596	19	0	0	0	0	logfile
✔	8H9F	34565	2025-05-15	2022-10-25	2.69	3.04	2.84	3.1	0.005	0.69	0.0	0.04	14.64	0.01	2.198	7.68	0.16	2.4	97.6	0.0	-2.36	0.66	0.86	3.41	3.1	0.003	0.58	0.0	0.04	16.53	0.00	2.536	7.12	2.39	1.7	98.3	0.0	2.23	1.12	0.55	0.83	2.73	12265	1596	22	0	3	0	0	logfile
✔	8H9L	34572	2025-05-23	2022-10-25	2.61	2.91	2.74	2.9	0.011	0.87	0.0	0.05	14.63	0.01	1.782	7.41	0.00	3.5	96.5	0.0	-2.29	0.75	0.89	4.47	2.9	0.003	0.55	0.0	0.04	16.28	0.00	1.992	5.33	1.14	1.9	98.1	0.0	1.16	0.83	0.69	0.89	3.80	23963	3128	14	0	10	0	0	logfile
✔	8H9Q	34577	2025-05-14	2022-10-25	3.47	3.93	3.64	3.9	0.005	0.73	0.0	0.05	13.53	0.01	2.203	12.33	0.00	3.2	96.8	0.0	-3.02	0.62	0.80	2.13	3.9	0.004	0.82	0.0	0.05	16.55	0.00	2.461	11.59	2.79	1.5	98.5	0.0	1.54	1.35	0.64	0.82	1.29	12083	1596	19	0	0	0	0	logfile
✔	8EXT	28662	2025-05-12	2022-10-25	4.6	4.06	4.50	7.3	0.026	2.04	0.0	0.12	10.97	0.01	2.014	14.28	2.03	5.3	93.9	0.8	-0.66	0.53	0.45	—	7.2	0.003	0.73	0.0	0.04	12.63	0.00	2.354	12.16	0.00	6.9	93.1	0.0	-0.76	1.13	0.61	0.62	—	8846	1062	4	0	2	0	0	logfile
✔	8EXA	28656	2025-05-10	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.53	0.00	2.450	12.88	2.83	2.7	97.3	0.0	0.92	1.14	0.60	0.68	3.97	5539	341	4	139	0	0	0	logfile
✔	8EXR	28660	2025-05-10	2022-10-25	3.8	4.08	3.94	4.1	0.026	1.94	0.0	0.11	12.16	0.01	2.016	3.98	0.00	2.8	96.9	0.3	-0.66	0.58	0.68	1.29	4.1	0.003	0.68	0.0	0.04	16.30	0.00	2.048	12.22	2.30	4.5	95.5	0.0	1.09	0.96	0.54	0.67	0.51	5111	590	5	0	7	0	0	logfile
✔	8EXS	28661	2025-05-12	2022-10-25	4.3	3.73	4.19	3.8	0.020	1.72	0.0	0.10	10.18	0.01	1.722	4.78	0.58	3.4	96.6	0.0	0.10	0.55	0.48	—	3.7	0.010	0.67	0.0	0.04	13.12	0.00	2.144	11.52	0.00	4.3	95.7	0.0	0.71	2.11	0.63	0.64	—	9320	1112	4	0	2	0	0	logfile
✔	8H9M	34573	2025-05-14	2022-10-25	3.0	3.41	3.17	3.4	0.004	0.60	0.0	0.04	13.76	0.01	2.218	9.32	0.00	4.0	96.0	0.0	-2.47	0.64	0.83	2.41	3.4	0.003	0.62	0.0	0.04	16.38	0.00	2.456	7.40	2.15	1.8	98.2	0.0	2.07	0.55	0.62	0.85	2.04	12083	1596	19	0	0	0	0	logfile
✔	8H9i	34568	2025-05-23	2022-10-25	2.77	3.11	2.92	3.1	0.007	0.80	0.0	0.05	14.44	0.00	1.946	8.69	0.00	4.3	95.7	0.1	-2.77	0.71	0.87	3.68	3.1	0.003	0.61	0.0	0.04	16.72	0.00	1.947	7.12	1.22	2.6	97.3	0.0	0.48	0.44	0.67	0.86	3.07	23961	3131	13	0	10	0	0	logfile
✔	8BFB	16019	2025-05-09	2022-10-24	3.2	3.13	2.99	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.005	0.53	0.0	0.05	17.31	0.00	2.629	5.21	1.43	1.4	98.6	0.0	-2.95	1.02	0.51	0.86	6.78	2860	380	10	0	0	0	0	logfile
✔	8EX8	28654	2025-05-09	2022-10-24	4.17	4.37	4.01	4.3	0.007	0.96	0.0	0.05	14.00	0.01	2.138	20.49	0.00	5.1	94.9	0.0	-0.72	0.56	0.74	—	4.4	0.003	0.64	0.0	0.04	13.99	0.00	2.582	11.33	0.00	1.7	98.3	0.0	1.33	0.63	0.52	0.70	—	3177	414	1	0	0	0	0	logfile

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