Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H96	34556	2025-05-13	2022-10-24	2.78	3.40	2.90	3.3	0.004	0.69	1.0	0.05	16.70	0.01	2.225	5.12	1.52	5.3	94.7	0.0	-0.55	0.75	0.82	2.38	3.3	0.004	0.65	0.0	0.04	17.61	0.00	2.449	3.77	1.92	5.7	94.3	0.0	-0.39	0.31	0.73	0.80	1.97	11098	1405	3	0	0	0	0	logfile
✔	8EX7	28653	2025-05-09	2022-10-24	3.53	3.77	3.46	3.8	0.004	0.69	0.0	0.04	13.31	0.01	2.211	6.36	0.00	4.2	95.8	0.0	0.68	0.59	0.76	2.20	3.8	0.003	0.61	0.0	0.04	15.38	0.00	2.577	6.98	2.99	2.5	97.5	0.0	2.02	0.37	0.59	0.75	1.39	3177	414	1	0	0	0	0	logfile
✔	8H94	34554	2025-05-13	2022-10-24	2.9	3.18	3.01	3.1	0.005	0.74	0.0	0.05	17.62	0.00	2.127	9.12	2.08	5.4	94.6	0.0	-0.56	0.73	0.84	2.28	3.1	0.003	0.60	0.0	0.04	17.85	0.00	2.395	5.48	3.28	4.9	95.1	0.0	-0.03	0.43	0.71	0.82	2.13	11098	1405	3	0	0	0	0	logfile
✔	8BFA	16018	2025-05-09	2022-10-24	3.0	3.05	2.97	3.3	0.002	0.39	0.0	0.05	13.94	0.00	2.592	6.46	0.00	0.0	100.0	0.0	-3.13	0.47	0.82	5.29	3.2	0.005	0.52	0.0	0.05	17.06	0.00	2.590	6.28	1.79	3.1	96.9	0.0	-2.30	1.02	0.52	0.88	6.77	2860	380	10	0	0	0	0	logfile
✔	8BFB	16019	2025-05-09	2022-10-24	3.2	3.13	2.99	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.005	0.53	0.0	0.05	17.31	0.00	2.629	5.21	1.43	1.4	98.6	0.0	-2.95	1.02	0.51	0.86	6.78	2860	380	10	0	0	0	0	logfile
✔	8H95	34555	2025-05-13	2022-10-24	3.38	4.02	3.51	4.0	0.004	0.81	1.0	0.05	17.99	0.01	2.171	9.12	0.32	5.9	94.1	0.0	-0.70	0.70	0.74	1.18	4.0	0.003	0.64	0.0	0.04	18.58	0.00	2.438	6.34	3.84	5.2	94.8	0.0	-0.48	1.18	0.65	0.69	0.97	11098	1405	3	0	0	0	0	logfile
✔	8H8X	34551	2025-05-15	2022-10-24	3.92	4.03	3.85	3.9	0.011	0.89	0.0	0.05	9.89	0.01	2.101	4.03	0.00	8.2	91.8	0.0	-3.57	0.79	0.76	2.31	3.9	0.002	0.57	0.0	0.04	13.13	0.00	2.304	4.32	0.53	5.6	94.4	0.0	0.14	1.95	0.78	0.76	1.88	13418	850	1	0	0	0	6667	logfile
✔	8H93	34552	2025-05-22	2022-10-24	3.01	3.53	3.18	3.4	0.003	0.68	0.0	0.04	16.45	0.01	2.143	12.88	1.08	3.8	96.2	0.0	0.19	0.70	0.66	1.14	3.4	0.005	0.77	0.0	0.04	17.41	0.00	2.339	10.86	3.20	5.6	94.4	0.0	-0.53	1.63	0.73	0.71	1.01	22191	2810	6	0	0	0	0	logfile
✔	8H8J	34549	2025-05-12	2022-10-23	3.2	2.26	3.29	2.1	0.003	0.66	0.0	0.04	10.44	0.00	1.939	9.85	2.59	2.3	97.6	0.1	-0.78	0.71	0.72	2.45	2.0	0.003	0.62	0.0	0.04	13.89	0.00	2.533	10.36	3.24	3.3	96.7	0.0	0.84	0.53	0.74	0.77	2.27	8842	1139	6	0	5	0	0	logfile
✔	8H8C	34542	2025-05-18	2022-10-22	3.36	3.50	3.41	3.5	0.002	0.47	0.0	0.04	13.15	0.00	2.223	7.53	1.83	9.1	90.9	0.0	-4.07	0.67	0.73	2.31	3.5	0.004	0.70	0.0	0.04	16.26	0.00	2.245	6.50	4.10	14.0	86.0	0.0	-3.44	0.68	0.71	0.82	2.83	16940	2078	4	0	0	0	0	logfile
✔	8H8A	34540	2025-05-11	2022-10-22	3.25	3.39	3.26	3.4	0.002	0.50	0.0	0.04	12.99	0.00	2.298	6.57	1.55	8.7	91.2	0.1	-3.31	0.71	0.79	2.16	3.4	0.006	0.79	0.0	0.05	16.02	0.00	2.363	5.54	3.11	14.2	85.7	0.1	-2.74	1.16	0.77	0.90	4.18	8454	1039	2	0	0	0	0	logfile
✔	8H8D	34543	2025-05-11	2022-10-22	4.26	4.56	4.16	4.3	0.004	0.87	0.0	0.05	18.37	0.02	2.155	18.68	4.97	4.6	95.4	0.0	-0.02	0.62	0.79	—	4.3	0.003	0.67	0.0	0.04	14.52	0.00	2.556	11.58	0.00	5.5	94.5	0.0	0.03	1.72	0.64	0.81	—	7054	856	3	0	0	0	0	logfile
✔	8H8E	34544	2025-05-17	2022-10-22	3.81	4.25	3.95	4.1	0.003	0.65	0.0	0.04	17.90	0.00	2.210	15.16	0.06	9.2	90.8	0.0	-2.48	0.64	0.68	2.02	4.1	0.004	0.68	0.0	0.04	19.24	0.00	2.508	13.47	2.97	9.1	90.9	0.0	-2.08	0.95	0.68	0.79	1.70	15818	1723	7	75	0	0	0	logfile
✔	8H8F	34545	2025-05-10	2022-10-22	3.48	4.08	3.84	4.0	0.003	0.69	0.0	0.05	17.03	0.01	2.140	13.54	1.02	3.3	96.7	0.0	-0.20	0.47	0.67	0.99	4.0	0.005	0.74	0.0	0.05	18.01	0.01	2.526	12.64	3.64	5.1	94.9	0.0	-0.51	0.48	0.48	0.69	0.74	6168	753	3	0	0	0	0	logfile
✔	8H8B	34541	2025-05-11	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.69	0.0	0.05	15.40	0.00	2.457	5.62	2.70	11.1	88.9	0.0	-1.90	0.62	0.74	0.85	3.83	8344	1027	1	0	0	0	0	logfile
✔	8BEW	16011	2025-05-21	2022-10-22	3.49	3.73	3.58	3.7	0.004	1.17	0.0	0.05	14.40	0.00	2.171	4.97	0.09	4.1	95.7	0.2	-1.10	0.73	0.74	1.44	3.7	0.008	1.19	0.0	0.04	16.23	0.00	2.434	6.01	1.74	4.1	95.8	0.1	-0.12	0.48	0.73	0.83	1.06	21004	2704	12	0	24	0	0	logfile
✔	8EW2	28640	2025-05-13	2022-10-21	3.1	3.17	3.26	3.1	0.004	0.63	0.0	0.04	17.05	0.00	2.188	13.54	0.46	3.4	96.6	0.0	0.64	0.78	0.88	2.37	3.1	0.003	0.55	0.0	0.04	17.71	0.00	2.564	9.17	3.19	2.5	97.5	0.0	1.03	0.34	0.78	0.88	2.33	10340	1356	4	0	0	0	0	logfile
✔	8BEi	16004	2025-05-18	2022-10-21	3.06	3.11	3.00	3.2	0.003	0.55	0.0	0.04	16.06	0.01	2.240	5.95	1.38	2.9	97.1	0.0	1.04	0.70	0.83	2.57	3.2	0.002	0.52	0.0	0.04	16.30	0.00	2.609	4.65	2.41	2.6	97.4	0.0	1.63	0.37	0.64	0.82	2.25	16578	2100	6	0	0	0	0	logfile
✔	8EW0	28639	2025-05-15	2022-10-21	2.7	2.71	2.65	2.7	0.003	0.57	0.0	0.04	18.44	0.00	2.224	7.02	2.82	1.9	98.0	0.1	1.98	0.68	0.90	3.71	2.7	0.002	0.48	0.0	0.04	18.36	0.00	2.498	5.14	3.79	1.3	98.6	0.1	2.92	0.87	0.69	0.91	3.47	13636	1747	6	0	0	0	0	logfile
✔	8BEJ	16005	2025-05-25	2022-10-21	3.24	3.94	3.38	3.7	0.002	0.37	0.0	0.04	6.96	0.00	2.170	2.39	0.00	2.1	97.9	0.0	1.70	0.73	0.84	4.62	3.7	0.004	0.51	0.0	0.04	11.67	0.00	2.450	2.87	0.13	2.6	97.4	0.0	1.32	0.94	0.73	0.85	4.08	27065	1680	10	0	5	0	13415	logfile

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