Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EW0	28639	2025-05-15	2022-10-21	2.7	2.71	2.65	2.7	0.003	0.57	0.0	0.04	18.44	0.00	2.224	7.02	2.82	1.9	98.0	0.1	1.98	0.68	0.90	3.71	2.7	0.002	0.48	0.0	0.04	18.36	0.00	2.498	5.14	3.79	1.3	98.6	0.1	2.92	0.87	0.69	0.91	3.47	13636	1747	6	0	0	0	0	logfile
✔	8EW2	28640	2025-05-13	2022-10-21	3.1	3.17	3.26	3.1	0.004	0.63	0.0	0.04	17.05	0.00	2.188	13.54	0.46	3.4	96.6	0.0	0.64	0.78	0.88	2.37	3.1	0.003	0.55	0.0	0.04	17.71	0.00	2.564	9.17	3.19	2.5	97.5	0.0	1.03	0.34	0.78	0.88	2.33	10340	1356	4	0	0	0	0	logfile
✔	8BEJ	16005	2025-05-25	2022-10-21	3.24	3.94	3.38	3.7	0.002	0.37	0.0	0.04	6.96	0.00	2.170	2.39	0.00	2.1	97.9	0.0	1.70	0.73	0.84	4.62	3.7	0.004	0.51	0.0	0.04	11.67	0.00	2.450	2.87	0.13	2.6	97.4	0.0	1.32	0.94	0.73	0.85	4.08	27065	1680	10	0	5	0	13415	logfile
✔	8EVG	28628	2025-05-17	2022-10-20	2.75	3.37	2.90	3.1	0.020	2.03	0.0	0.13	28.95	0.01	1.794	13.48	0.29	2.8	97.2	0.0	1.12	0.84	0.83	2.42	3.1	0.003	0.60	0.0	0.04	27.37	0.00	2.094	8.07	2.04	2.9	97.1	0.0	1.66	1.26	0.82	0.85	2.70	15577	1212	12	294	0	0	0	logfile
✔	8EVJ	28631	2025-05-17	2022-10-20	4.1	4.84	4.24	3.9	0.005	0.94	0.0	0.05	26.05	0.01	2.284	6.05	0.09	4.0	96.0	0.0	-1.52	0.92	0.86	—	3.9	0.003	0.65	0.0	0.04	25.57	0.00	2.057	12.37	0.09	3.6	96.4	0.0	0.52	0.47	0.92	0.86	—	15951	1301	13	276	0	0	0	logfile
✔	8EVi	28630	2025-05-17	2022-10-20	2.64	3.19	2.79	3.1	0.005	0.68	3.0	0.05	26.59	0.00	2.045	8.89	0.09	3.2	96.8	0.0	1.34	0.71	0.79	3.10	3.1	0.004	0.62	0.0	0.04	26.56	0.00	2.407	6.22	2.44	3.1	96.9	0.0	1.30	0.39	0.64	0.74	3.13	16157	1301	13	286	0	0	0	logfile
✔	8H7Q	34524	2025-05-22	2022-10-20	3.8	4.38	3.64	3.9	0.004	0.84	3.0	0.05	17.42	0.01	1.442	25.24	0.72	9.7	90.2	0.2	-2.36	0.81	0.75	0.69	3.9	0.005	0.86	0.0	0.05	18.82	0.01	2.431	16.91	2.65	12.2	87.4	0.3	-2.35	1.53	0.82	0.79	0.74	22884	2652	15	82	0	0	0	logfile
✔	8EVH	28629	2025-05-17	2022-10-20	2.85	3.12	2.96	3.0	0.005	0.72	3.0	0.05	26.46	0.00	1.975	8.93	0.09	3.3	96.7	0.0	1.34	0.78	0.83	2.63	3.0	0.004	0.61	0.0	0.04	26.61	0.00	2.409	7.29	2.80	3.0	97.0	0.0	1.40	1.60	0.78	0.86	3.09	16077	1301	13	282	0	0	0	logfile
✔	8EVU	28637	2025-05-14	2022-10-20	2.5804	3.19	2.51	2.9	0.003	0.45	0.0	0.04	8.86	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.002	0.54	0.0	0.04	12.80	0.00	1.532	3.96	0.56	2.4	97.6	0.0	1.54	0.42	0.75	0.90	3.82	11902	1540	9	0	5	0	0	logfile
✔	8BDZ	15995	2025-05-09	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.003	0.63	0.0	0.04	14.42	0.00	2.509	6.39	1.64	2.0	98.0	0.0	2.99	0.44	0.49	0.86	2.77	3309	414	3	0	0	0	0	logfile
✔	8EUV	28618	2025-05-20	2022-10-19	2.6	2.88	2.60	2.8	0.017	1.15	0.0	0.05	16.36	0.01	2.127	2.67	0.62	2.5	97.5	0.0	0.16	0.69	0.85	4.42	2.8	0.003	0.64	0.0	0.04	14.66	0.00	2.402	4.35	2.49	1.8	98.2	0.0	0.76	0.34	0.67	0.85	3.92	20138	2400	54	0	87	200	0	logfile
✔	8EUU	28617	2025-05-20	2022-10-19	2.7	2.84	2.65	2.9	0.005	0.69	0.0	0.05	17.09	0.00	2.012	2.16	0.48	2.4	97.6	0.0	1.20	0.70	0.82	3.37	2.9	0.004	0.65	0.0	0.04	15.43	0.00	2.517	4.58	2.01	2.1	97.9	0.0	0.81	0.34	0.71	0.87	3.94	19926	2400	45	0	87	0	0	logfile
✔	8BDC	15981	2025-05-28	2022-10-19	2.65	2.01	—	2.7	0.003	0.41	0.0	0.04	16.76	0.00	2.285	5.26	2.15	2.7	97.3	0.0	2.17	0.85	0.85	2.97	2.7	0.004	0.57	0.0	0.04	17.16	0.00	2.523	7.10	3.52	2.4	97.6	0.0	1.65	0.39	0.83	0.85	2.97	30132	3852	8	0	24	0	0	logfile
✔	8H77	34519	2025-05-17	2022-10-19	3.2	2.74	3.17	3.1	0.012	0.84	0.0	0.05	15.36	0.00	1.365	13.57	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.003	0.66	0.0	0.04	17.62	0.00	0.890	7.93	2.66	4.3	95.7	0.0	-0.54	0.69	0.69	0.77	2.05	15726	1930	8	0	4	0	0	logfile
✔	8EUW	28619	2025-05-20	2022-10-19	2.7	2.85	2.67	2.8	0.009	0.91	1.0	0.05	16.63	0.00	2.072	1.86	0.48	1.6	98.4	0.0	0.65	0.70	0.82	3.35	2.8	0.003	0.63	0.0	0.04	14.75	0.00	2.363	4.62	2.78	2.6	97.4	0.0	0.77	0.89	0.68	0.86	3.47	20040	2400	46	0	81	180	0	logfile
✔	8BD5	15975	2025-05-26	2022-10-18	3.3	3.58	3.17	2.2	0.004	0.63	0.0	0.04	23.07	0.00	1.983	16.63	0.76	3.1	96.8	0.0	0.06	0.78	0.79	1.35	2.2	0.004	0.60	0.0	0.04	22.69	0.00	1.897	12.56	3.03	2.9	97.1	0.0	0.36	0.75	0.79	0.82	1.29	28398	2671	21	328	16	0	0	logfile
✔	8EUE	28612	2025-05-14	2022-10-18	3.48	4.06	3.85	3.7	0.007	1.33	0.0	0.06	31.23	0.01	2.242	6.41	0.00	3.8	96.2	0.0	-2.48	0.78	0.80	0.90	3.7	0.004	0.96	0.0	0.04	30.20	0.01	2.309	18.06	4.74	3.8	96.2	0.0	0.65	0.45	0.78	0.80	0.72	11926	751	10	294	0	0	0	logfile
✔	8EU2	28602	2025-05-11	2022-10-18	2.93	2.77	3.14	2.1	0.005	0.82	0.0	0.05	28.13	0.01	2.381	2.44	0.00	2.5	97.5	0.0	-0.81	0.82	0.81	2.88	2.0	0.004	0.65	0.0	0.04	28.43	0.01	2.497	9.31	4.35	2.1	97.9	0.0	2.71	0.41	0.84	0.85	2.03	8682	524	8	220	0	0	0	logfile
✔	8EU8	28608	2025-05-16	2022-10-18	3.73	2.48	3.70	2.2	0.014	1.89	0.0	0.10	12.70	0.01	1.755	3.29	0.47	5.4	94.6	0.0	-0.91	0.73	0.74	3.31	2.3	0.004	0.78	0.0	0.05	15.42	0.00	2.396	7.54	3.27	3.4	96.6	0.0	-0.23	0.65	0.75	0.75	1.92	14181	1692	24	0	63	0	0	logfile
✔	8BD6	15976	2025-05-28	2022-10-18	4.1	5.46	4.04	4.2	0.009	1.37	18.0	0.09	23.55	0.01	1.062	17.28	8.81	2.2	97.8	0.0	-2.08	0.71	0.61	—	3.4	0.004	0.76	0.0	0.04	20.84	0.01	1.803	23.56	0.00	5.6	94.4	0.0	-0.73	1.60	0.74	0.63	—	29951	2900	24	313	18	0	0	logfile

• ← previous
• Page 296 of 642
• next →