Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EUJ	28614	2025-05-14	2022-10-18	3.36	4.07	3.85	3.7	0.006	1.22	0.0	0.06	30.77	0.01	2.233	5.43	0.00	2.6	97.4	0.0	-2.60	0.71	0.76	0.82	3.7	0.004	0.79	0.0	0.04	30.01	0.01	2.484	16.95	4.89	3.0	97.0	0.0	0.27	1.31	0.71	0.78	0.62	11913	747	10	294	0	0	0	logfile
✔	8BD6	15976	2025-05-28	2022-10-18	4.1	5.46	4.04	4.2	0.009	1.37	18.0	0.09	23.55	0.01	1.062	17.28	8.81	2.2	97.8	0.0	-2.08	0.71	0.61	—	3.4	0.004	0.76	0.0	0.04	20.84	0.01	1.803	23.56	0.00	5.6	94.4	0.0	-0.73	1.60	0.74	0.63	—	29951	2900	24	313	18	0	0	logfile
✔	8BD5	15975	2025-05-26	2022-10-18	3.3	3.58	3.17	2.2	0.004	0.63	0.0	0.04	23.07	0.00	1.983	16.63	0.76	3.1	96.8	0.0	0.06	0.78	0.79	1.35	2.2	0.004	0.60	0.0	0.04	22.69	0.00	1.897	12.56	3.03	2.9	97.1	0.0	0.36	0.75	0.79	0.82	1.29	28398	2671	21	328	16	0	0	logfile
✔	8BCZ	15971	2025-05-11	2022-10-17	2.9	3.19	2.93	3.2	0.003	0.49	0.0	0.04	9.57	0.00	2.204	6.10	1.18	2.8	97.2	0.0	0.33	0.65	0.83	4.65	3.2	0.002	0.51	0.0	0.04	13.54	0.00	2.531	5.08	2.36	2.4	97.6	0.0	0.85	0.43	0.63	0.83	3.78	8505	1100	9	0	0	0	0	logfile
✔	8ETV	28600	2025-05-11	2022-10-17	3.16	3.01	3.36	2.0	0.006	0.87	0.0	0.05	28.21	0.01	2.305	2.83	0.00	2.3	97.7	0.0	-0.99	0.80	0.77	1.76	2.0	0.006	0.67	0.0	0.04	28.74	0.00	2.496	12.91	5.72	2.1	97.9	0.0	1.83	0.44	0.82	0.81	1.48	8682	524	8	220	0	0	0	logfile
✔	8ETU	28599	2025-05-26	2022-10-17	2.8	2.33	2.89	2.1	0.005	0.92	2.0	0.05	17.82	0.01	1.735	5.60	0.06	3.5	96.5	0.0	-1.69	0.73	0.79	2.09	2.0	0.004	0.67	0.0	0.04	18.35	0.01	2.456	6.09	2.97	3.6	96.4	0.0	0.39	0.56	0.83	0.85	2.26	28670	3656	16	0	6	0	0	logfile
✔	8H6F	34501	2025-05-28	2022-10-17	3.3	3.44	3.15	3.5	0.005	0.63	0.0	0.05	16.75	0.02	2.148	5.87	0.26	4.5	95.5	0.1	-1.50	0.69	0.80	1.82	3.5	0.005	0.63	0.0	0.05	17.07	0.00	2.330	4.16	2.75	4.8	95.2	0.0	-1.21	0.93	0.68	0.79	1.86	31017	3890	14	0	34	0	0	logfile
✔	8ETW	28601	2025-05-26	2022-10-17	2.64	2.14	2.83	1.8	0.006	0.91	2.0	0.05	18.08	0.01	1.435	5.62	0.09	3.7	96.3	0.0	-1.81	0.81	0.83	2.59	1.8	0.003	0.61	0.0	0.04	18.31	0.00	2.433	5.00	2.85	3.0	97.0	0.0	0.22	0.91	0.81	0.83	2.44	28666	3656	16	0	6	0	0	logfile
✔	8BCP	15967	2025-05-19	2022-10-17	3.88	3.53	3.81	3.7	0.003	0.53	0.0	0.04	17.06	0.00	2.151	10.41	0.30	3.2	96.7	0.1	-0.67	0.61	0.59	0.14	3.5	0.005	0.70	0.0	0.05	17.76	0.00	2.453	11.07	3.36	4.1	95.7	0.1	-0.98	2.09	0.76	0.81	2.04	18171	2337	9	0	0	0	0	logfile
✔	8ETS	28597	2025-05-27	2022-10-17	3.04	2.39	3.08	2.1	0.004	0.83	0.0	0.05	17.56	0.01	1.956	3.86	0.03	3.1	96.9	0.0	-1.71	0.72	0.78	1.98	2.1	0.004	0.91	1.0	0.05	17.80	0.00	2.294	6.49	3.23	3.1	96.9	0.0	0.38	0.57	0.82	0.84	2.14	28670	3656	16	0	6	0	0	logfile
✔	8H6H	34504	2025-05-28	2022-10-17	2.3	3.01	2.32	2.7	0.003	0.47	0.0	0.04	16.99	0.00	2.112	1.88	0.94	3.1	96.9	0.0	1.06	0.84	0.91	5.32	2.7	0.003	0.48	0.0	0.04	16.92	0.00	2.319	1.27	0.53	3.0	97.0	0.0	0.93	0.17	0.87	0.93	5.19	31017	1971	4	0	4	0	15181	logfile
✔	8BCM	15966	2025-05-30	2022-10-17	2.15	2.26	2.26	2.3	0.005	0.67	0.0	0.05	16.84	0.01	2.070	8.09	0.85	2.8	97.0	0.2	0.91	0.72	0.88	5.18	2.3	0.005	0.70	0.0	0.05	16.82	0.01	2.443	7.48	1.47	2.5	97.5	0.0	0.89	0.23	0.73	0.89	4.86	33520	4216	16	0	0	0	0	logfile
✔	8BCU	15968	2025-05-19	2022-10-17	4.05	3.79	3.99	3.9	0.004	0.55	0.0	0.04	16.80	0.00	1.950	12.32	0.15	6.6	93.3	0.1	-0.88	0.75	0.66	—	3.9	0.004	0.68	0.0	0.05	14.20	0.00	2.439	11.94	0.00	4.4	95.6	0.0	-1.37	2.11	0.83	0.82	—	18279	2349	9	0	0	0	0	logfile
✔	8H69	34497	2025-05-19	2022-10-16	3.7	3.79	3.26	3.7	0.009	1.12	0.0	0.06	12.85	0.01	1.917	7.93	1.52	7.5	92.4	0.2	-4.98	0.77	0.74	2.05	3.7	0.004	0.81	0.0	0.05	16.04	0.00	2.473	13.55	2.41	6.6	93.4	0.0	-1.96	1.43	0.78	0.76	1.36	18028	2153	5	37	0	0	0	logfile
✔	8ET6	28586	2025-05-11	2022-10-16	3.57	3.92	3.74	3.9	0.003	0.56	0.0	0.04	11.90	0.00	1.831	5.02	0.47	3.6	96.4	0.0	0.54	0.52	0.71	1.69	3.9	0.003	0.56	0.0	0.03	14.78	0.00	2.393	6.00	1.89	4.3	95.7	0.0	1.25	1.34	0.49	0.70	1.68	8092	532	2	0	2	0	4007	logfile
✔	8ET9	28589	2025-05-11	2022-10-16	3.61	3.97	3.82	3.9	0.005	0.61	0.0	0.04	10.84	0.01	2.058	8.46	0.52	1.8	98.2	0.0	1.38	0.46	0.67	2.05	3.9	0.004	0.60	0.0	0.04	14.74	0.00	2.417	7.29	2.88	4.5	95.5	0.0	0.95	4.55	0.48	0.69	1.78	7685	517	2	0	1	0	3796	logfile
✔	8ET7	28587	2025-05-11	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.50	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.56	0.0	0.04	15.59	0.00	2.389	6.70	2.59	4.3	95.7	0.0	2.15	1.49	0.48	0.71	1.46	8111	532	3	0	3	0	4007	logfile
✔	8H67	34495	2025-05-24	2022-10-15	3.8	4.68	3.97	4.0	0.003	0.68	0.0	0.04	16.40	0.00	1.834	19.90	0.08	9.6	90.1	0.2	-2.58	0.87	0.77	0.61	4.1	0.003	0.78	0.0	0.04	18.07	0.00	2.372	14.14	3.00	11.7	88.1	0.2	-2.51	1.46	0.88	0.81	0.56	25622	3050	15	58	0	0	0	logfile
✔	8BC4	15962	2025-05-18	2022-10-14	2.7	2.11	2.15	2.5	0.015	2.01	1.0	0.10	18.10	0.02	2.310	4.45	10.79	4.1	95.8	0.0	-4.88	0.59	0.76	3.14	2.4	0.003	0.61	0.0	0.04	16.74	0.00	2.555	4.19	2.17	1.3	98.7	0.0	1.40	0.64	0.60	0.78	3.68	16440	2167	29	0	9	270	0	logfile
✔	8BC0	15958	2025-05-13	2022-10-14	3.09	3.54	2.96	3.5	0.004	0.59	0.0	0.04	13.16	0.01	2.052	17.19	7.06	5.0	95.0	0.0	0.18	0.54	0.60	1.08	3.5	0.004	0.75	0.0	0.05	15.90	0.01	2.139	18.85	4.51	5.1	94.9	0.0	-0.08	0.76	0.54	0.60	1.11	10861	1316	4	0	6	0	0	logfile

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