Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BC1	15959	2025-05-12	2022-10-14	2.93	3.48	2.74	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.003	0.75	0.0	0.04	15.39	0.01	2.275	12.86	1.93	2.9	97.1	0.0	0.88	0.98	0.39	0.53	1.06	8684	1054	4	0	6	0	0	logfile
✔	8BC3	15961	2025-05-18	2022-10-14	2.1	2.00	2.14	2.2	0.014	1.93	0.0	0.10	18.17	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	2.1	0.004	0.62	0.0	0.05	15.87	0.00	2.561	3.40	0.63	0.8	99.2	0.0	2.06	0.49	0.76	0.88	6.16	16880	2170	30	0	10	500	0	logfile
✔	8BC4	15962	2025-05-18	2022-10-14	2.7	2.11	2.15	2.5	0.015	2.01	1.0	0.10	18.10	0.02	2.310	4.45	10.79	4.1	95.8	0.0	-4.88	0.59	0.76	3.14	2.4	0.003	0.61	0.0	0.04	16.74	0.00	2.555	4.19	2.17	1.3	98.7	0.0	1.40	0.64	0.60	0.78	3.68	16440	2167	29	0	9	270	0	logfile
✔	8BC2	15960	2025-05-18	2022-10-14	2.6	2.43	2.67	2.8	0.012	1.66	0.0	0.10	18.31	0.03	2.311	3.08	13.21	4.2	95.8	0.0	-4.52	0.75	0.85	4.09	2.7	0.003	0.56	0.0	0.04	17.10	0.00	2.596	3.97	1.64	1.6	98.4	0.0	1.90	1.05	0.76	0.86	4.32	16770	2180	20	0	0	460	0	logfile
✔	8ES9	28572	2025-05-16	2022-10-13	3.25	3.52	3.21	3.4	0.005	0.77	0.0	0.05	14.59	0.00	2.176	6.90	0.00	5.4	94.6	0.1	0.26	0.71	0.84	2.76	3.4	0.004	0.71	0.0	0.05	15.49	0.00	2.350	5.70	2.34	5.0	94.9	0.1	0.54	0.35	0.74	0.88	2.53	11844	1459	17	0	14	0	0	logfile
✔	8ESA	28573	2025-05-09	2022-10-13	3.4	3.68	3.36	3.6	0.004	0.49	0.0	0.04	14.83	0.00	2.243	5.75	0.30	4.0	96.0	0.0	-0.99	0.65	0.84	2.85	3.6	0.002	0.49	0.0	0.04	16.39	0.00	2.476	4.60	0.90	2.7	97.3	0.0	-0.13	0.39	0.65	0.86	2.18	3140	384	3	0	0	0	0	logfile
✔	8ESB	28574	2025-05-09	2022-10-13	3.12	3.62	3.11	3.5	0.006	0.63	0.0	0.05	14.31	0.00	2.245	5.09	0.00	4.5	95.5	0.0	-2.63	0.67	0.86	3.83	3.5	0.003	0.56	0.0	0.04	16.11	0.00	2.491	2.96	1.51	2.4	97.6	0.0	0.18	0.93	0.65	0.85	3.65	3140	384	3	0	0	0	0	logfile
✔	8ES8	28571	2025-05-14	2022-10-13	2.65	2.71	2.68	2.7	0.004	0.80	0.0	0.05	14.96	0.00	2.142	6.32	0.08	3.4	96.6	0.0	0.76	0.72	0.86	3.52	2.7	0.003	0.73	0.0	0.05	15.89	0.00	2.430	5.56	1.94	3.8	96.1	0.1	0.77	0.97	0.72	0.89	3.37	11976	1464	21	0	19	0	0	logfile
✔	8ES7	28570	2025-05-12	2022-10-13	3.04	3.42	3.02	3.3	0.004	0.72	0.0	0.05	16.73	0.00	2.133	6.93	0.10	5.9	94.1	0.0	0.86	0.67	0.85	3.35	3.3	0.004	0.69	0.0	0.05	15.54	0.00	2.351	4.35	1.15	5.5	94.5	0.1	0.94	0.34	0.67	0.87	3.14	8822	1080	18	0	19	0	0	logfile
✔	8H5B	34490	2025-05-11	2022-10-12	4.03	4.23	3.99	4.1	0.005	0.74	0.0	0.04	12.98	0.01	1.882	23.17	0.00	4.5	95.5	0.0	-1.67	0.79	0.73	—	4.1	0.003	0.71	0.0	0.04	13.47	0.00	2.420	16.01	0.00	3.2	96.8	0.0	0.37	1.34	0.78	0.73	—	8570	1075	2	0	0	0	0	logfile
✔	8BB1	15953	2025-05-17	2022-10-12	2.8	3.65	2.85	3.3	0.003	0.42	0.0	0.04	10.05	0.01	2.226	3.53	0.71	2.0	98.0	0.0	0.54	0.89	0.88	4.07	3.3	0.004	0.62	0.0	0.04	12.69	0.00	2.518	5.81	0.88	2.5	97.5	0.0	0.85	2.28	0.88	0.86	3.74	16168	2100	20	0	4	24	0	logfile
✔	8ERL	28554	2025-05-10	2022-10-12	3.9	4.58	3.36	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.82	0.0	0.05	15.94	0.00	2.614	17.42	3.43	8.2	91.8	0.0	-2.64	1.04	0.87	0.79	-0.44	6600	830	2	0	0	0	0	logfile
✔	8ERT	28560	2025-05-26	2022-10-12	3.3	3.67	3.52	3.7	0.003	0.59	0.0	0.04	14.14	0.01	2.203	10.41	0.00	8.1	91.9	0.1	0.22	0.70	0.81	1.27	3.7	0.003	0.68	0.0	0.04	16.59	0.01	2.346	8.85	0.94	8.4	91.6	0.0	0.61	0.40	0.73	0.85	1.11	16359	1995	21	0	0	0	0	logfile
✔	8BBE	15954	2025-05-20	2022-10-12	3.5	4.13	3.61	3.7	0.013	1.80	8.0	0.10	13.29	0.02	2.550	0.22	0.05	4.2	95.8	0.0	-1.27	0.77	0.66	1.77	3.7	0.003	0.68	0.0	0.04	15.52	0.00	2.495	9.04	1.01	3.6	96.4	0.0	0.13	1.80	0.83	0.77	1.12	20181	2513	5	0	6	0	0	logfile
✔	8ERQ	28558	2025-05-09	2022-10-12	3.3	3.48	3.21	3.5	0.011	1.34	0.0	0.07	10.04	0.01	2.265	2.12	0.95	3.8	96.2	0.0	0.38	0.63	0.76	4.07	3.5	0.003	0.64	0.0	0.04	13.87	0.00	2.613	3.26	4.11	3.6	96.4	0.0	-0.18	1.85	0.65	0.84	3.63	3178	423	4	0	1	0	0	logfile
✔	8ERR	28559	2025-05-24	2022-10-12	3.1	3.29	3.06	3.3	0.011	1.38	2.0	0.08	9.91	0.01	2.346	2.36	0.88	3.0	96.7	0.3	0.26	0.73	0.78	4.14	3.3	0.003	0.63	0.0	0.05	12.35	0.00	2.551	2.72	1.76	2.9	97.1	0.0	0.61	1.14	0.74	0.79	3.79	25780	3742	13	0	50	0	0	logfile
✔	8ERP	28557	2025-05-10	2022-10-12	3.7	3.96	3.14	4.0	0.004	0.86	0.0	0.04	19.42	0.01	2.016	7.49	0.00	5.8	94.2	0.0	0.16	0.66	0.80	2.15	3.9	0.003	0.69	0.0	0.04	17.13	0.00	1.998	3.87	2.54	6.9	93.1	0.0	1.62	0.52	0.68	0.81	1.91	6056	728	4	0	26	0	0	logfile
✔	8ERC	28552	2025-05-09	2022-10-11	3.7	3.47	3.06	3.7	0.003	0.67	0.0	0.04	12.91	0.00	2.115	8.25	0.00	2.3	97.7	0.0	1.99	0.51	0.65	1.22	3.7	0.003	0.74	0.0	0.04	16.38	0.00	2.582	9.25	2.49	2.1	97.9	0.0	1.92	0.97	0.51	0.65	0.70	3510	441	1	0	0	0	0	logfile
✔	8H4U	34484	2025-05-11	2022-10-11	3.5	3.38	3.51	3.4	0.002	0.59	0.0	0.04	18.36	0.00	2.218	8.59	1.28	5.1	94.9	0.0	0.05	0.75	0.82	1.33	3.4	0.003	0.60	0.0	0.04	18.58	0.00	2.314	7.33	2.45	5.7	94.3	0.0	1.72	1.31	0.74	0.81	0.55	7944	959	1	0	0	0	0	logfile
✔	8ERA	28551	2025-05-27	2022-10-11	2.86	3.52	2.95	3.4	0.005	0.77	1.0	0.05	16.12	0.01	2.202	5.09	1.11	5.6	94.3	0.1	0.09	0.70	0.80	1.89	3.4	0.003	0.63	0.0	0.04	16.94	0.00	2.235	4.28	1.34	4.1	95.8	0.0	1.70	0.56	0.70	0.81	1.59	29054	3644	6	0	2	0	0	logfile

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