Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ERC	28552	2025-05-09	2022-10-11	3.7	3.47	3.06	3.7	0.003	0.67	0.0	0.04	12.91	0.00	2.115	8.25	0.00	2.3	97.7	0.0	1.99	0.51	0.65	1.22	3.7	0.003	0.74	0.0	0.04	16.38	0.00	2.582	9.25	2.49	2.1	97.9	0.0	1.92	0.97	0.51	0.65	0.70	3510	441	1	0	0	0	0	logfile
✔	8H4K	34479	2025-05-11	2022-10-10	3.1	2.32	3.10	3.1	0.006	0.73	0.0	0.05	13.57	0.00	2.061	4.14	0.00	5.5	94.5	0.0	0.17	0.77	0.81	3.47	3.1	0.002	0.52	0.0	0.04	14.91	0.00	2.548	3.08	1.65	3.7	96.3	0.0	1.27	0.30	0.77	0.82	2.61	8078	1055	6	0	1	0	0	logfile
✔	8H4L	34480	2025-05-11	2022-10-10	3.07	2.31	3.09	3.0	0.007	0.90	0.0	0.05	12.79	0.01	2.069	4.07	0.23	4.4	95.6	0.0	-0.34	0.77	0.81	3.85	3.0	0.002	0.56	0.0	0.04	14.48	0.00	2.508	2.71	1.38	3.3	96.7	0.0	1.27	0.35	0.78	0.82	3.04	8171	1059	6	0	1	0	0	logfile
✔	8H4i	34478	2025-05-11	2022-10-10	3.06	2.31	3.08	3.0	0.016	1.05	0.0	0.06	13.70	0.01	2.147	4.38	0.00	5.3	94.7	0.0	-0.34	0.77	0.83	3.22	3.0	0.003	0.58	0.0	0.04	15.06	0.00	2.489	2.67	0.83	2.8	97.2	0.0	1.17	0.35	0.77	0.84	2.38	7965	1035	6	0	1	0	0	logfile
✔	8EQV	28547	2025-05-16	2022-10-09	3.64	4.53	3.76	4.0	0.003	0.78	0.0	0.04	16.23	0.00	2.188	12.26	0.13	8.3	91.5	0.2	-1.97	0.88	0.83	1.37	4.0	0.003	0.61	0.0	0.04	16.35	0.00	2.512	6.95	1.46	6.4	93.4	0.2	-0.46	0.60	0.88	0.83	1.54	13974	1765	5	0	0	0	0	logfile
✔	8EQT	28545	2025-05-09	2022-10-09	3.4	3.89	3.32	3.7	0.006	0.89	0.0	0.05	17.01	0.00	2.213	11.78	0.00	2.1	97.9	0.0	0.61	0.62	0.82	3.25	3.7	0.004	0.54	0.0	0.04	19.22	0.00	2.509	8.48	5.20	1.1	98.9	0.0	1.70	1.17	0.65	0.87	2.55	3206	382	4	0	4	0	0	logfile
✔	8H3U	32828	2025-05-10	2022-10-09	4.7	3.74	—	2.6	0.002	0.56	0.0	0.04	7.77	0.00	2.279	8.94	1.98	5.8	94.1	0.1	-3.28	0.52	0.42	—	2.4	0.003	0.66	0.0	0.04	9.62	0.00	2.488	13.05	0.00	9.2	90.8	0.0	-1.70	0.85	0.56	0.48	—	6383	818	2	0	0	0	0	logfile
✔	8H3M	34469	2025-05-21	2022-10-09	2.48	2.22	2.25	2.2	0.004	0.68	0.0	0.05	16.22	0.00	2.218	5.84	2.03	3.6	96.1	0.3	-0.03	0.72	0.87	4.26	2.2	0.004	0.63	0.0	0.05	16.04	0.00	2.498	4.77	2.82	4.2	95.6	0.2	0.25	1.10	0.72	0.87	4.39	20936	2662	8	0	22	0	0	logfile
✔	8H3Q	34473	2025-05-17	2022-10-09	3.76	2.75	3.78	2.8	0.007	1.14	5.0	0.06	20.58	0.01	2.017	18.05	10.27	11.0	88.1	0.9	-1.84	0.70	0.65	0.62	2.8	0.005	1.00	1.0	0.05	19.06	0.01	1.997	17.89	4.28	9.2	90.5	0.3	-0.23	1.24	0.70	0.70	0.58	15511	1956	4	0	3	0	0	logfile
✔	8H3N	34470	2025-05-25	2022-10-09	2.73	2.40	2.51	2.5	0.009	0.90	0.0	0.05	17.75	0.01	1.912	6.51	4.45	7.2	92.6	0.2	-1.36	0.73	0.85	4.07	2.5	0.005	0.70	0.0	0.05	17.17	0.00	2.403	5.85	3.92	5.8	94.0	0.1	-0.48	1.12	0.73	0.86	3.76	26338	3347	10	0	28	0	0	logfile
✔	8EQU	28546	2025-05-10	2022-10-09	2.8	3.03	2.79	3.0	0.004	0.79	0.0	0.04	14.51	0.00	2.025	8.25	0.00	1.9	98.1	0.0	-0.12	0.64	0.76	2.12	3.0	0.003	0.59	0.0	0.03	14.95	0.00	2.584	4.86	1.40	1.5	98.5	0.0	0.96	1.04	0.68	0.82	1.83	5764	542	10	0	318	0	0	logfile
✔	8EQS	28544	2025-05-09	2022-10-09	3.1	3.53	3.09	3.4	0.005	0.74	0.0	0.04	19.17	0.00	2.219	12.31	0.00	2.8	97.2	0.0	0.01	0.66	0.82	2.72	3.4	0.003	0.55	0.0	0.04	18.68	0.00	2.586	5.12	2.32	1.9	98.1	0.0	1.88	1.15	0.69	0.87	2.22	3654	438	6	0	2	0	0	logfile
✔	8H36	34452	2025-05-29	2022-10-08	4.6	3.34	4.56	3.3	0.009	1.08	15.0	0.07	17.13	0.00	2.201	13.04	14.08	8.8	89.7	1.5	-3.21	0.53	0.50	—	1.9	0.004	0.81	0.0	0.05	13.25	0.00	2.357	17.10	0.03	8.8	90.9	0.3	-1.42	1.09	0.58	0.65	—	28650	3507	10	0	6	0	0	logfile
✔	8H3D	34464	2025-05-23	2022-10-08	3.27	3.75	3.38	3.6	0.004	0.61	3.0	0.05	16.86	0.00	2.173	3.86	0.26	6.4	93.6	0.0	-3.11	0.77	0.85	1.54	3.6	0.003	0.85	2.0	0.05	17.16	0.00	2.340	3.37	4.36	6.3	93.7	0.0	-2.88	0.29	0.78	0.87	1.55	24448	3103	6	0	13	0	0	logfile
✔	8H3H	34468	2025-05-24	2022-10-08	3.15	3.23	3.12	3.2	0.007	0.92	1.0	0.05	16.37	0.01	1.854	12.44	3.65	9.2	90.3	0.4	-4.15	0.80	0.87	3.32	3.2	0.003	0.67	0.0	0.04	16.82	0.00	2.280	5.07	1.86	6.6	93.2	0.2	-0.60	0.44	0.81	0.89	2.69	25408	3174	10	0	6	0	0	logfile
✔	8H3E	34465	2025-05-24	2022-10-08	3.06	3.44	3.39	3.3	0.005	0.53	0.0	0.04	16.70	0.00	1.960	8.20	0.22	5.4	94.6	0.0	-2.27	0.81	0.89	2.90	3.3	0.005	0.68	0.0	0.05	17.04	0.00	2.570	1.25	4.15	6.0	94.0	0.0	-2.09	0.89	0.81	0.89	2.67	24957	3159	6	0	18	0	0	logfile
✔	8EQF	28537	2025-05-09	2022-10-07	3.16	2.26	3.10	2.1	0.005	0.60	0.0	0.04	14.57	0.00	1.998	5.82	0.00	5.5	94.5	0.0	-0.38	0.75	0.81	3.52	2.1	0.003	0.58	0.0	0.04	14.03	0.00	2.421	5.36	1.38	3.8	96.2	0.0	0.12	0.87	0.76	0.81	3.87	3348	422	4	0	2	0	0	logfile
✔	8EQJ	28538	2025-05-09	2022-10-07	3.0	3.22	2.93	3.2	0.005	0.94	0.0	0.04	24.65	0.01	2.219	9.35	0.00	2.7	97.3	0.0	-0.19	0.47	0.74	2.78	3.2	0.003	0.57	0.0	0.04	18.49	0.00	2.592	7.32	0.86	0.5	99.5	0.0	1.68	1.16	0.63	0.88	2.92	3232	384	4	0	4	0	0	logfile
✔	8H2T	34443	2025-05-16	2022-10-07	2.59	3.14	2.68	3.0	0.003	0.60	0.0	0.04	16.32	0.00	2.043	5.51	1.52	3.0	96.9	0.1	0.43	0.76	0.86	4.68	3.0	0.003	0.59	0.0	0.04	16.64	0.00	2.051	3.95	0.86	3.7	96.1	0.2	0.88	0.20	0.76	0.86	4.12	14370	1776	9	0	9	0	0	logfile
✔	8EPP	28532	2025-05-23	2022-10-06	3.1	3.64	3.22	2.9	0.004	0.64	0.0	0.05	16.17	0.00	2.217	7.58	0.35	3.6	96.2	0.1	0.11	0.84	0.84	2.03	2.9	0.003	0.64	0.0	0.05	14.85	0.00	2.426	6.74	2.65	4.0	95.9	0.1	0.02	0.39	0.85	0.85	2.03	23913	2939	21	0	66	0	0	logfile

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