Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B9G	15931	2025-05-16	2022-10-06	2.86	3.74	2.90	3.4	0.005	1.20	0.0	0.04	17.07	0.00	1.632	9.22	1.43	2.4	97.4	0.2	1.29	0.85	0.82	3.17	3.3	0.002	0.59	0.0	0.04	16.84	0.00	2.486	5.03	0.72	1.7	98.2	0.1	1.94	0.98	0.86	0.86	2.50	7782	953	3	10	2	5	0	logfile
✔	8EPQ	28533	2025-05-23	2022-10-06	3.3	3.96	3.41	3.0	0.004	0.76	0.0	0.05	14.31	0.00	2.117	7.20	0.12	3.2	96.8	0.0	0.04	0.85	0.83	2.38	3.0	0.004	0.69	0.0	0.05	13.78	0.00	2.410	5.51	1.38	4.2	95.8	0.0	0.09	0.43	0.86	0.84	2.06	24287	2984	21	0	66	0	0	logfile
✔	8EPM	28530	2025-05-17	2022-10-06	3.1	3.22	3.12	3.2	0.004	0.57	0.0	0.04	18.04	0.00	2.203	7.74	0.55	5.8	94.1	0.1	-0.05	0.62	0.84	2.62	3.2	0.003	0.60	0.0	0.04	17.16	0.00	2.352	6.01	3.37	5.6	94.3	0.1	0.40	1.17	0.60	0.84	2.65	15458	1939	9	0	17	0	0	logfile
✔	8EPN	28531	2025-05-24	2022-10-06	2.8	3.18	2.88	2.9	0.005	0.79	0.0	0.05	18.17	0.00	2.214	6.72	0.84	2.7	97.3	0.0	-0.10	0.84	0.87	2.78	2.9	0.003	0.64	0.0	0.05	14.56	0.00	2.437	5.00	1.30	2.3	97.7	0.0	0.23	1.02	0.84	0.87	2.10	25077	2991	39	0	126	0	0	logfile
✔	8B9J	15933	2025-05-15	2022-10-06	3.45	4.21	3.54	3.9	0.005	1.37	0.0	0.05	17.47	0.02	2.019	13.74	1.18	7.2	92.1	0.7	-0.47	0.83	0.73	1.65	3.9	0.003	0.68	0.0	0.04	17.20	0.00	1.730	9.04	1.70	6.8	92.9	0.4	0.83	0.97	0.87	0.82	1.26	6879	864	2	0	3	0	0	logfile
✔	8B9i	15932	2025-05-16	2022-10-06	2.95	3.92	2.99	3.5	0.011	1.24	0.0	0.05	19.48	0.01	1.963	11.55	2.31	3.6	96.3	0.1	0.95	0.84	0.75	2.31	3.6	0.003	0.68	0.0	0.04	18.21	0.00	1.997	7.87	1.85	4.0	95.9	0.1	1.17	1.78	0.83	0.85	2.14	8026	984	4	11	3	5	0	logfile
✔	8H2G	34437	2025-05-12	2022-10-06	3.01	3.20	3.01	3.2	0.004	0.57	0.0	0.04	16.85	0.00	2.123	9.49	0.61	3.8	96.2	0.0	0.07	0.64	0.76	1.58	3.2	0.003	0.60	0.0	0.04	17.26	0.00	2.505	6.59	6.22	3.7	96.2	0.1	0.13	0.45	0.63	0.76	1.72	9023	1145	6	0	1	0	0	logfile
✔	8EPP	28532	2025-05-23	2022-10-06	3.1	3.64	3.22	2.9	0.004	0.64	0.0	0.05	16.17	0.00	2.217	7.58	0.35	3.6	96.2	0.1	0.11	0.84	0.84	2.03	2.9	0.003	0.64	0.0	0.05	14.85	0.00	2.426	6.74	2.65	4.0	95.9	0.1	0.02	0.39	0.85	0.85	2.03	23913	2939	21	0	66	0	0	logfile
✔	8B9L	15935	2025-05-14	2022-10-06	3.45	4.42	3.49	3.9	0.004	0.78	1.0	0.05	17.52	0.02	2.155	14.92	1.18	8.4	90.8	0.8	-0.21	0.77	0.59	0.69	3.9	0.003	0.84	0.0	0.05	17.40	0.01	2.512	15.66	3.02	7.9	91.2	0.8	-0.11	1.81	0.85	0.78	1.03	6826	862	1	0	0	0	0	logfile
✔	8B8T	15921	2025-05-11	2022-10-05	4.2	3.64	4.08	4.1	0.011	1.78	2.0	0.09	14.33	0.01	2.558	0.50	1.78	3.9	95.8	0.3	-1.08	0.73	0.77	—	4.0	0.004	0.73	0.0	0.04	13.62	0.00	2.405	6.05	0.00	3.9	96.1	0.0	0.59	0.52	0.73	0.76	—	7180	989	4	0	0	0	0	logfile
✔	8B9F	15930	2025-05-11	2022-10-05	3.93	4.21	3.89	4.1	0.006	0.76	1.0	0.06	13.30	0.01	2.185	8.71	1.45	2.3	97.4	0.3	-1.28	0.46	0.63	1.86	4.1	0.005	1.19	1.0	0.05	15.93	0.00	2.275	16.41	3.23	2.0	98.0	0.0	-0.80	0.89	0.49	0.71	1.81	5533	709	5	0	1	0	0	logfile
✔	8EPA	28523	2025-05-10	2022-10-05	3.4	4.08	3.32	3.8	0.004	0.70	0.0	0.05	15.76	0.00	2.184	14.18	0.18	9.3	90.4	0.3	-2.16	0.75	0.75	1.53	3.8	0.005	0.81	0.0	0.05	15.97	0.00	2.368	13.58	2.87	10.4	89.3	0.3	-2.16	0.41	0.76	0.77	1.27	5045	637	6	0	2	0	0	logfile
✔	8H1T	34431	2025-05-18	2022-10-04	3.0	3.40	1.60	3.2	0.003	0.53	0.0	0.04	24.61	0.00	2.164	10.82	0.00	2.2	97.8	0.0	2.26	0.72	0.67	1.40	3.2	0.005	0.69	0.0	0.04	26.45	0.00	1.079	10.42	3.65	3.8	96.2	0.0	1.33	0.67	0.76	0.74	1.41	17365	1323	14	334	0	0	0	logfile
✔	8B8M	15917	2025-05-14	2022-10-04	3.49	3.89	3.35	3.7	0.003	0.53	0.0	0.04	12.08	0.00	2.148	9.98	4.46	3.7	96.3	0.0	1.08	0.63	0.76	1.75	3.8	0.005	0.88	1.0	0.04	14.91	0.00	2.165	11.94	2.50	3.0	96.9	0.1	0.97	1.50	0.62	0.75	1.22	11758	1423	4	0	6	0	0	logfile
✔	8EoP	28451	2025-05-15	2022-10-04	3.7	3.39	3.68	3.8	0.003	0.63	0.0	0.04	15.22	0.00	2.001	6.86	0.00	5.6	94.3	0.1	0.22	0.60	0.77	1.59	3.8	0.003	0.63	0.0	0.04	15.55	0.00	1.974	5.66	1.87	5.5	94.5	0.0	0.68	1.39	0.63	0.78	1.32	13265	1687	4	0	15	0	0	logfile
✔	8B8K	15916	2025-05-15	2022-10-04	3.01	3.58	2.86	3.4	0.003	0.50	0.0	0.04	11.83	0.00	2.111	6.75	2.92	2.6	97.4	0.0	1.53	0.63	0.81	3.01	3.4	0.003	0.57	0.0	0.04	14.48	0.00	2.280	6.10	2.92	2.7	97.3	0.0	1.58	0.63	0.61	0.80	2.87	12324	1482	4	0	8	0	0	logfile
✔	8EoW	28487	2025-05-23	2022-10-04	3.9	4.29	3.96	4.2	0.003	0.57	0.0	0.04	16.05	0.00	2.211	8.15	0.35	4.0	96.0	0.0	1.45	0.65	0.72	1.03	4.2	0.003	0.62	0.0	0.04	16.52	0.00	2.512	6.76	3.54	3.9	96.1	0.0	1.57	0.31	0.65	0.74	1.03	24628	3372	8	0	0	0	0	logfile
✔	8EP0	28494	2025-05-23	2022-10-04	4.9	6.49	5.03	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.79	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	5.3	0.003	0.66	0.0	0.05	12.52	0.00	2.510	14.03	0.00	3.9	96.1	0.0	0.34	0.56	0.70	0.75	—	24408	3372	8	0	0	0	0	logfile
✔	8B8J	15914	2025-05-14	2022-10-04	2.96	3.60	2.92	3.4	0.003	0.46	0.0	0.04	9.83	0.00	2.211	6.94	1.25	2.4	97.6	0.0	2.21	0.60	0.76	1.84	3.4	0.003	0.63	0.0	0.04	13.43	0.00	2.219	7.54	2.51	2.3	97.7	0.0	1.65	1.47	0.63	0.80	2.26	11686	1418	4	0	6	0	0	logfile
✔	8EoT	28467	2025-05-24	2022-10-04	3.3	4.07	3.37	3.6	0.004	0.63	0.0	0.05	15.75	0.00	2.009	5.09	6.03	5.5	94.4	0.1	-1.47	0.85	0.84	2.24	3.6	0.005	0.75	1.0	0.04	16.57	0.00	1.994	4.59	2.50	5.6	94.3	0.1	-0.32	0.44	0.90	0.91	1.98	25299	3061	10	77	3	0	0	logfile

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