Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B8K	15916	2025-05-15	2022-10-04	3.01	3.58	2.86	3.4	0.003	0.50	0.0	0.04	11.83	0.00	2.111	6.75	2.92	2.6	97.4	0.0	1.53	0.63	0.81	3.01	3.4	0.003	0.57	0.0	0.04	14.48	0.00	2.280	6.10	2.92	2.7	97.3	0.0	1.58	0.63	0.61	0.80	2.87	12324	1482	4	0	8	0	0	logfile
✔	8EoP	28451	2025-05-15	2022-10-04	3.7	3.39	3.68	3.8	0.003	0.63	0.0	0.04	15.22	0.00	2.001	6.86	0.00	5.6	94.3	0.1	0.22	0.60	0.77	1.59	3.8	0.003	0.63	0.0	0.04	15.55	0.00	1.974	5.66	1.87	5.5	94.5	0.0	0.68	1.39	0.63	0.78	1.32	13265	1687	4	0	15	0	0	logfile
✔	8B8Q	15919	2025-05-14	2022-10-04	2.94	3.52	2.88	3.4	0.004	0.54	0.0	0.04	12.63	0.00	2.126	11.28	7.93	4.8	95.2	0.0	0.94	0.66	0.80	2.92	3.4	0.003	0.67	0.0	0.04	15.11	0.00	2.294	10.66	2.91	3.6	96.4	0.0	0.85	1.02	0.67	0.80	2.65	11370	1382	4	0	6	0	0	logfile
✔	8EoK	28378	2025-05-22	2022-10-03	3.53	3.92	3.87	3.8	0.003	0.61	0.0	0.05	14.89	0.00	2.102	7.18	0.04	5.7	94.3	0.0	-1.09	0.80	0.81	2.06	3.8	0.003	0.60	0.0	0.04	15.95	0.00	2.040	5.35	1.55	5.0	95.0	0.0	-0.87	0.31	0.80	0.82	1.98	22233	2792	9	0	6	0	0	logfile
✔	8EoJ	28377	2025-05-12	2022-10-03	3.07	3.47	3.19	3.2	0.002	0.55	0.0	0.04	11.26	0.00	2.216	7.60	3.76	4.1	95.9	0.0	-1.48	0.69	0.60	0.95	3.2	0.003	0.68	0.0	0.04	14.59	0.00	2.452	15.04	2.34	4.9	95.1	0.0	-0.22	1.72	0.70	0.61	0.93	9327	1219	2	0	0	0	0	logfile
✔	8B7V	15903	2025-05-13	2022-10-03	3.0	3.71	3.00	3.4	0.015	1.80	8.0	0.11	15.92	0.02	2.409	0.05	1.76	2.6	96.7	0.6	-0.16	0.76	0.73	6.06	3.4	0.004	0.64	0.0	0.04	16.24	0.00	2.517	4.00	0.69	1.8	98.2	0.1	-0.54	0.60	0.84	0.91	5.58	10050	1263	3	0	0	0	0	logfile
✔	8H1J	34428	2025-05-10	2022-10-03	3.1	3.36	3.21	3.3	0.005	0.89	0.0	0.03	22.06	0.00	2.232	8.41	5.19	1.7	98.3	0.0	2.19	0.62	0.67	2.02	3.3	0.004	0.56	0.0	0.03	22.33	0.00	2.187	6.45	4.55	2.0	98.0	0.0	1.24	1.45	0.71	0.79	1.90	5773	362	5	134	1	0	0	logfile
✔	8EoE	28373	2025-05-24	2022-10-03	3.2	3.93	3.23	3.5	0.003	0.63	0.0	0.05	22.43	0.01	1.984	5.34	17.34	9.0	90.4	0.5	-3.14	0.88	0.86	2.23	3.5	0.003	0.61	0.0	0.04	19.63	0.00	1.978	4.61	2.33	4.2	95.8	0.1	-0.62	0.69	0.90	0.89	2.05	25301	3030	10	88	3	0	0	logfile
✔	8EoF	28374	2025-05-24	2022-10-03	3.3	3.98	3.26	3.6	0.005	0.70	0.0	0.05	22.49	0.01	1.961	5.21	17.49	9.6	89.7	0.8	-3.14	0.86	0.85	2.03	3.6	0.003	0.61	0.0	0.04	19.71	0.00	1.948	4.65	2.32	4.6	95.4	0.1	-0.62	0.68	0.91	0.90	1.82	25608	3031	10	102	3	0	0	logfile
✔	8Eoi	28376	2025-05-27	2022-10-03	3.4	4.02	—	3.5	0.002	0.51	0.0	0.04	11.72	0.00	2.137	8.14	2.73	5.4	94.6	0.0	0.20	0.78	0.84	2.39	3.5	0.003	0.59	0.0	0.04	13.46	0.00	2.549	6.18	2.37	5.2	94.8	0.0	0.39	0.35	0.79	0.89	2.13	28721	3562	16	0	8	0	0	logfile
✔	8H1P	34430	2025-05-17	2022-10-03	3.48	3.37	3.43	3.5	0.003	0.56	0.0	0.04	18.45	0.00	2.208	10.09	0.00	0.5	99.5	0.0	0.52	0.71	0.79	0.67	3.4	0.006	0.65	0.0	0.05	18.03	0.00	2.375	8.29	1.90	2.9	97.1	0.0	0.50	0.57	0.71	0.80	1.44	15950	2024	11	0	0	0	0	logfile
✔	8EoG	28375	2025-05-20	2022-10-03	3.3	3.80	—	3.5	0.003	0.67	0.0	0.04	17.72	0.00	2.193	11.78	0.56	7.5	92.4	0.1	-1.06	0.63	0.79	2.19	3.5	0.003	0.65	0.0	0.04	17.19	0.00	2.386	8.51	2.80	6.5	93.4	0.1	-0.28	0.94	0.65	0.86	1.83	19729	2417	8	0	21	3	0	logfile
✔	8EoA	28332	2025-05-14	2022-10-02	3.9	4.51	3.97	4.3	0.004	0.58	0.0	0.04	11.61	0.00	1.718	7.88	1.64	3.4	96.6	0.0	0.27	0.82	0.81	1.51	4.3	0.003	0.75	0.0	0.04	15.62	0.00	1.862	11.09	1.33	2.9	97.1	0.0	0.27	1.55	0.82	0.83	1.25	11535	1421	5	0	4	0	0	logfile
✔	8H1C	34427	2025-05-19	2022-10-02	4.5	5.28	4.54	4.4	0.008	0.81	0.0	0.05	17.95	0.00	2.204	8.17	4.42	7.2	92.8	0.0	-3.24	0.87	0.77	—	4.4	0.002	0.64	0.0	0.04	16.73	0.00	2.476	7.35	0.06	4.6	95.4	0.0	-0.32	0.92	0.89	0.84	—	18483	1966	4	142	2	0	0	logfile
✔	8EoB	28333	2025-05-13	2022-10-02	3.1	3.53	3.19	3.4	0.005	0.61	0.0	0.04	11.57	0.00	1.945	7.00	1.78	2.6	97.4	0.0	0.42	0.76	0.84	3.12	3.4	0.005	0.55	0.0	0.04	14.24	0.00	1.934	5.32	1.69	2.8	97.2	0.0	1.03	0.53	0.76	0.84	2.53	10141	1245	4	0	4	0	0	logfile
✔	8H13	34423	2025-05-22	2022-09-30	4.05	4.03	4.00	4.0	0.005	0.87	0.0	0.05	14.19	0.01	2.254	3.85	0.83	5.0	95.0	0.0	-1.27	0.76	0.79	—	4.0	0.004	0.66	0.0	0.04	13.73	0.00	2.510	6.04	0.00	4.3	95.7	0.0	-0.45	0.42	0.76	0.79	—	22113	2793	6	0	21	0	0	logfile
✔	8H15	34425	2025-05-22	2022-09-30	3.14182	3.18	3.11	3.2	0.011	1.08	1.0	0.07	14.03	0.01	2.182	2.84	0.00	5.5	94.5	0.0	-1.79	0.75	0.83	3.70	3.2	0.003	0.60	0.0	0.04	14.88	0.00	2.559	2.80	1.68	3.7	96.3	0.0	0.02	1.38	0.73	0.84	2.93	22813	2888	6	0	18	0	0	logfile
✔	8H0X	34417	2025-05-24	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.96	0.0	0.06	12.82	0.01	2.257	1.76	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	2.7	0.003	0.66	0.0	0.05	13.96	0.00	2.360	2.65	1.82	3.2	96.8	0.0	-0.09	1.60	0.82	0.88	3.64	25122	3117	6	0	48	0	0	logfile
✔	8H12	34422	2025-05-23	2022-09-30	3.44681	3.52	3.41	3.5	0.006	0.87	0.0	0.06	13.96	0.01	2.253	2.68	0.00	4.0	96.0	0.0	-2.04	0.71	0.84	3.55	3.5	0.003	0.59	0.0	0.05	14.92	0.00	2.543	3.66	1.98	2.9	97.1	0.0	-0.61	0.32	0.72	0.85	2.96	24221	3022	9	0	45	0	0	logfile
✔	8ENQ	28276	2025-05-10	2022-09-30	3.6	3.97	3.72	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.004	0.92	0.0	0.05	15.78	0.00	2.503	22.21	1.87	10.7	89.3	0.0	-3.91	1.95	0.47	0.52	3.27	5593	777	7	0	0	0	0	logfile

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